Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47583 * 2 1 4 4 C 1.50703 * 109.47177 * 179.97438 * 3 2 1 5 5 C 1.39277 * 126.40681 * 269.96925 * 4 3 2 6 6 C 1.41598 * 126.55545 * 0.05167 * 5 4 3 7 7 H 1.07997 * 120.00267 * 6.94384 * 6 5 4 8 8 C 1.39704 * 119.99808 * 186.94201 * 6 5 4 9 9 N 1.31024 * 119.99694 * 10.46945 * 8 6 5 10 10 Si 1.86800 * 119.99680 * 190.46569 * 8 6 5 11 11 H 1.48494 * 109.47131 * 93.97278 * 10 8 6 12 12 H 1.48505 * 109.46628 * 213.96910 * 10 8 6 13 13 H 1.48500 * 109.47118 * 333.96384 * 10 8 6 14 14 C 1.41888 * 106.88620 * 180.02562 * 5 4 3 15 15 N 1.30320 * 108.04531 * 359.74678 * 14 5 4 16 16 N 1.34502 * 126.40437 * 89.99990 * 4 3 2 17 17 C 1.46499 * 125.68067 * 359.95883 * 16 4 3 18 18 C 1.53005 * 109.47371 * 119.99468 * 17 16 4 19 19 C 1.53000 * 109.47213 * 239.99906 * 17 16 4 20 20 H 1.08994 * 109.47333 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46988 * 300.00300 * 1 2 3 22 22 H 1.09003 * 109.46567 * 59.99833 * 1 2 3 23 23 H 1.09008 * 109.47449 * 239.99551 * 2 1 3 24 24 H 1.09005 * 109.47066 * 120.00047 * 2 1 3 25 25 H 1.08997 * 109.47203 * 59.99831 * 3 2 1 26 26 H 1.09003 * 109.47305 * 299.99715 * 3 2 1 27 27 H 0.97002 * 119.99691 * 180.02562 * 9 8 6 28 28 H 1.07997 * 125.97464 * 179.97438 * 14 5 4 29 29 H 1.09004 * 109.47029 * 359.97438 * 17 16 4 30 30 H 1.08997 * 109.46442 * 60.00712 * 18 17 16 31 31 H 1.08999 * 109.47064 * 300.00594 * 18 17 16 32 32 H 1.08997 * 109.47043 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.47125 * 299.99946 * 19 17 16 34 34 H 1.09007 * 109.46962 * 59.99692 * 19 17 16 35 35 H 1.08997 * 109.47248 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.3732 1.4430 1.1219 6 6 3.9578 1.4429 2.4756 7 1 2.9119 1.3292 2.7195 8 6 4.9009 1.5900 3.4957 9 7 6.1321 1.9314 3.2053 10 14 4.4065 1.2998 5.2736 11 1 4.7104 -0.1044 5.6490 12 1 5.1652 2.2231 6.1552 13 1 2.9512 1.5503 5.4299 14 6 5.7108 1.4432 0.6484 15 7 5.6778 1.4372 -0.6544 16 7 4.3458 1.4421 -1.0816 17 6 3.8957 1.4411 -2.4757 18 6 4.4247 2.6902 -3.1834 19 6 4.4261 0.1917 -3.1819 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 6.7871 2.0331 3.9136 28 1 6.6005 1.4441 1.2605 29 1 2.8061 1.4400 -2.5058 30 1 5.5142 2.6907 -3.1534 31 1 4.0469 3.5803 -2.6802 32 1 4.0894 2.6896 -4.2205 33 1 5.5156 0.1923 -3.1519 34 1 4.0492 -0.6982 -2.6777 35 1 4.0909 0.1907 -4.2191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260721904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = 42.457696 kcal Electronic energy + Delta-G solvation = -15528.447066 eV Core-core repulsion = 13141.060582 eV Total energy + Delta-G solvation = -2387.386484 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42934 -34.90053 -34.31375 -33.00854 -29.60550 -28.72940 -26.85037 -26.14585 -24.01786 -21.64934 -21.02371 -19.28291 -17.92531 -16.57066 -15.38647 -14.77981 -14.33022 -13.89748 -13.84574 -13.26490 -12.87764 -12.54012 -12.15079 -12.00532 -11.81760 -11.68645 -11.45794 -11.13561 -10.97516 -10.81563 -10.75966 -10.69732 -10.53514 -10.12818 -10.02949 -9.76161 -9.10067 -8.68996 -7.60091 -7.01231 -6.38900 -3.87205 3.08325 3.23948 3.27392 3.47925 3.94615 4.19343 4.46128 5.17805 5.45711 5.48541 5.51576 5.56622 5.68879 5.71916 5.86469 5.92405 6.05609 6.13563 6.15849 6.27146 6.34680 6.42875 6.48625 6.58382 6.62803 6.82046 6.95473 6.98780 7.40316 7.72573 7.75033 8.22921 8.65801 8.73744 9.15950 9.24624 9.61620 10.62877 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.009908 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.313079 B = 2825.214329 C = 3682.975303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.017 4.017 4 C -0.091 4.091 5 C -0.012 4.012 6 C -0.435 4.435 7 H 0.068 0.932 8 C 0.067 3.933 9 N -0.839 5.839 10 Si 0.907 3.093 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.029 3.971 15 N -0.335 5.335 16 N -0.382 5.382 17 C 0.169 3.831 18 C -0.156 4.156 19 C -0.155 4.155 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.271 0.729 28 H 0.191 0.809 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -1.717 -6.840 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.056 4.056 4 C -0.212 4.212 5 C -0.021 4.021 6 C -0.469 4.469 7 H 0.086 0.914 8 C -0.143 4.143 9 N -0.470 5.470 10 Si 0.734 3.266 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.158 4.158 15 N -0.156 5.156 16 N -0.172 5.172 17 C 0.065 3.935 18 C -0.214 4.214 19 C -0.214 4.214 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.208 0.792 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.424 -1.664 -7.871 9.702 hybrid contribution -0.635 -0.108 1.646 1.768 sum -6.059 -1.772 -6.224 8.865 Atomic orbital electron populations 1.21792 0.96907 1.00732 1.01240 1.21531 0.94060 0.98001 1.01974 1.19623 0.89788 0.95515 1.00685 1.20691 0.91971 1.21298 0.87278 1.17916 0.90222 1.01652 0.92351 1.18706 0.94118 1.44959 0.89149 0.91382 1.25616 0.94689 0.93456 1.00554 1.69625 1.03694 1.39693 1.34026 0.86321 0.79226 0.78518 0.82562 1.20082 1.20807 1.19192 1.24672 0.99941 1.01434 0.89707 1.76481 0.97287 1.26646 1.15221 1.47410 1.03638 1.62973 1.03145 1.20707 0.97927 0.95225 0.79639 1.22105 1.02650 0.97601 0.99067 1.22103 1.02611 0.97564 0.99076 0.93466 0.92826 0.93465 0.93232 0.91408 0.91052 0.93837 0.91783 0.79219 0.89968 0.91603 0.92643 0.92373 0.91620 0.92693 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -2.04 5.92 -26.74 -0.16 -2.19 16 3 C -0.02 -0.33 5.06 -27.88 -0.14 -0.47 16 4 C -0.09 -2.18 6.31 -81.03 -0.51 -2.69 16 5 C -0.01 -0.32 5.90 -106.83 -0.63 -0.95 16 6 C -0.43 -11.85 9.08 -37.75 -0.34 -12.19 16 7 H 0.07 1.79 7.47 -52.49 -0.39 1.40 16 8 C 0.07 1.77 5.45 -17.35 -0.09 1.68 16 9 N -0.84 -22.58 10.56 55.54 0.59 -21.99 16 10 Si 0.91 19.89 29.57 -169.99 -5.03 14.86 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 C 0.03 0.80 10.88 -16.80 -0.18 0.62 16 15 N -0.33 -8.53 12.30 30.97 0.38 -8.15 16 16 N -0.38 -8.68 3.25 -49.78 -0.16 -8.85 16 17 C 0.17 2.98 3.62 -67.93 -0.25 2.73 16 18 C -0.16 -2.47 9.45 37.16 0.35 -2.12 16 19 C -0.16 -2.43 9.44 37.16 0.35 -2.08 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.07 1.44 7.67 -51.93 -0.40 1.04 16 26 H 0.04 0.76 7.09 -51.93 -0.37 0.39 16 27 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.19 5.32 6.04 -52.49 -0.32 5.00 16 29 H 0.08 1.32 6.64 -51.93 -0.34 0.98 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -28.96 290.79 -6.68 -35.64 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.60 Total: 3.46 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.24 Total: -19.36 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.81 Total: -38.98 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.96 -6.68 -35.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260721904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.102 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds