Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47583 * 2 1 4 4 C 1.50703 * 109.47177 * 179.97438 * 3 2 1 5 5 C 1.39277 * 126.40681 * 269.96925 * 4 3 2 6 6 C 1.41598 * 126.55545 * 0.05167 * 5 4 3 7 7 H 1.07997 * 120.00267 * 6.94384 * 6 5 4 8 8 C 1.39704 * 119.99808 * 186.94201 * 6 5 4 9 9 N 1.31024 * 119.99694 * 10.46945 * 8 6 5 10 10 Si 1.86800 * 119.99680 * 190.46569 * 8 6 5 11 11 H 1.48494 * 109.47131 * 93.97278 * 10 8 6 12 12 H 1.48505 * 109.46628 * 213.96910 * 10 8 6 13 13 H 1.48500 * 109.47118 * 333.96384 * 10 8 6 14 14 C 1.41888 * 106.88620 * 180.02562 * 5 4 3 15 15 N 1.30320 * 108.04531 * 359.74678 * 14 5 4 16 16 N 1.34502 * 126.40437 * 89.99990 * 4 3 2 17 17 C 1.46499 * 125.68067 * 359.95883 * 16 4 3 18 18 C 1.53005 * 109.47371 * 119.99468 * 17 16 4 19 19 C 1.53000 * 109.47213 * 239.99906 * 17 16 4 20 20 H 1.08994 * 109.47333 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46988 * 300.00300 * 1 2 3 22 22 H 1.09003 * 109.46567 * 59.99833 * 1 2 3 23 23 H 1.09008 * 109.47449 * 239.99551 * 2 1 3 24 24 H 1.09005 * 109.47066 * 120.00047 * 2 1 3 25 25 H 1.08997 * 109.47203 * 59.99831 * 3 2 1 26 26 H 1.09003 * 109.47305 * 299.99715 * 3 2 1 27 27 H 0.97002 * 119.99691 * 180.02562 * 9 8 6 28 28 H 1.07997 * 125.97464 * 179.97438 * 14 5 4 29 29 H 1.09004 * 109.47029 * 359.97438 * 17 16 4 30 30 H 1.08997 * 109.46442 * 60.00712 * 18 17 16 31 31 H 1.08999 * 109.47064 * 300.00594 * 18 17 16 32 32 H 1.08997 * 109.47043 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.47125 * 299.99946 * 19 17 16 34 34 H 1.09007 * 109.46962 * 59.99692 * 19 17 16 35 35 H 1.08997 * 109.47248 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.3732 1.4430 1.1219 6 6 3.9578 1.4429 2.4756 7 1 2.9119 1.3292 2.7195 8 6 4.9009 1.5900 3.4957 9 7 6.1321 1.9314 3.2053 10 14 4.4065 1.2998 5.2736 11 1 4.7104 -0.1044 5.6490 12 1 5.1652 2.2231 6.1552 13 1 2.9512 1.5503 5.4299 14 6 5.7108 1.4432 0.6484 15 7 5.6778 1.4372 -0.6544 16 7 4.3458 1.4421 -1.0816 17 6 3.8957 1.4411 -2.4757 18 6 4.4247 2.6902 -3.1834 19 6 4.4261 0.1917 -3.1819 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 6.7871 2.0331 3.9136 28 1 6.6005 1.4441 1.2605 29 1 2.8061 1.4400 -2.5058 30 1 5.5142 2.6907 -3.1534 31 1 4.0469 3.5803 -2.6802 32 1 4.0894 2.6896 -4.2205 33 1 5.5156 0.1923 -3.1519 34 1 4.0492 -0.6982 -2.6777 35 1 4.0909 0.1907 -4.2191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260721904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = 26.312801 kcal Electronic energy + Delta-G solvation = -15529.147161 eV Core-core repulsion = 13141.060582 eV Total energy + Delta-G solvation = -2388.086579 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.31067 -36.49040 -35.78996 -34.87604 -31.30120 -30.58926 -28.11990 -27.79091 -25.85973 -23.30842 -22.43859 -21.19685 -19.63328 -18.50751 -17.02849 -16.63923 -15.77561 -15.53165 -15.28339 -14.88408 -14.46588 -14.01935 -13.73205 -13.50390 -13.29076 -13.07178 -13.02410 -12.82122 -12.68410 -12.39955 -12.19668 -12.10871 -11.95287 -11.76310 -11.71797 -11.38529 -11.03528 -10.65956 -9.48066 -8.99420 -8.32831 -5.89755 1.31166 1.43921 1.56331 1.61051 2.25498 2.35832 2.44424 3.58948 3.79888 4.10907 4.13867 4.17254 4.27389 4.38632 4.58187 4.69583 4.71722 4.78757 4.86432 4.87964 4.96165 5.04360 5.12892 5.24171 5.29316 5.30654 5.35445 5.41559 5.57039 5.76077 5.84467 6.18989 6.64461 6.86344 7.21353 7.23157 7.63317 8.70476 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.009908 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.313079 B = 2825.214329 C = 3682.975303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.017 4.017 4 C -0.072 4.072 5 C -0.062 4.062 6 C -0.463 4.463 7 H 0.067 0.933 8 C 0.019 3.981 9 N -0.871 5.871 10 Si 0.979 3.021 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.260 1.260 14 C -0.004 4.004 15 N -0.349 5.349 16 N -0.370 5.370 17 C 0.150 3.850 18 C -0.149 4.149 19 C -0.148 4.148 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.275 0.725 28 H 0.173 0.827 29 H 0.108 0.892 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 -2.014 -8.375 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.056 4.056 4 C -0.197 4.197 5 C -0.072 4.072 6 C -0.498 4.498 7 H 0.085 0.915 8 C -0.188 4.188 9 N -0.504 5.504 10 Si 0.802 3.198 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.184 1.184 14 C -0.188 4.188 15 N -0.173 5.173 16 N -0.159 5.159 17 C 0.048 3.952 18 C -0.207 4.207 19 C -0.205 4.205 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.189 0.811 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.880 -1.961 -9.438 12.450 hybrid contribution 0.066 -0.007 1.891 1.892 sum -7.814 -1.968 -7.547 11.041 Atomic orbital electron populations 1.21722 0.93616 1.02219 1.02301 1.21418 0.96836 0.95720 1.00859 1.19774 0.86601 0.97522 1.01677 1.21419 0.94097 1.17318 0.86852 1.18331 0.90862 1.04293 0.93732 1.18910 0.94361 1.46518 0.89971 0.91454 1.26458 0.94576 0.93037 1.04731 1.69740 1.04672 1.40676 1.35293 0.85233 0.79082 0.78378 0.77129 1.19690 1.20188 1.18439 1.24439 0.99867 1.04052 0.90426 1.76391 0.99022 1.27532 1.14333 1.47983 1.02645 1.60046 1.05211 1.21351 0.99596 0.97240 0.77002 1.22056 1.01287 0.95943 1.01405 1.22045 1.01259 0.95879 1.01365 0.91832 0.92802 0.91386 0.92809 0.94162 0.91906 0.90867 0.91513 0.81080 0.87395 0.93595 0.93732 0.87796 0.93585 0.93597 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.11 -3.58 5.92 30.59 0.18 -3.40 16 3 C -0.02 -0.62 5.06 29.85 0.15 -0.47 16 4 C -0.07 -3.45 6.31 42.40 0.27 -3.18 16 5 C -0.06 -3.52 5.90 -21.30 -0.13 -3.64 16 6 C -0.46 -26.13 9.08 23.45 0.21 -25.92 16 7 H 0.07 3.64 7.47 -2.91 -0.02 3.62 16 8 C 0.02 1.02 5.45 85.17 0.46 1.49 16 9 N -0.87 -49.11 10.56 21.79 0.23 -48.88 16 10 Si 0.98 41.75 29.57 68.60 2.03 43.78 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 13 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 14 C 0.00 -0.21 10.88 85.82 0.93 0.73 16 15 N -0.35 -18.28 12.30 -55.93 -0.69 -18.97 16 16 N -0.37 -16.63 3.25 -311.41 -1.01 -17.64 16 17 C 0.15 4.84 3.62 44.99 0.16 5.01 16 18 C -0.15 -4.29 9.45 71.98 0.68 -3.61 16 19 C -0.15 -4.19 9.44 71.98 0.68 -3.51 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.06 2.47 7.67 -2.39 -0.02 2.46 16 26 H 0.07 2.30 7.09 -2.39 -0.02 2.28 16 27 H 0.27 14.29 8.30 -92.71 -0.77 13.52 16 28 H 0.17 10.33 6.04 -2.91 -0.02 10.31 16 29 H 0.11 2.98 6.64 -2.38 -0.02 2.96 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -66.13 290.79 5.93 -60.20 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 1.05 Total: 20.71 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.32 Total: -39.19 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.47 Total: -85.50 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -66.13 5.93 -60.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260721904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.514 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds