Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47024 * 2 1 4 4 N 1.36423 * 126.39926 * 273.88565 * 3 2 1 5 5 H 0.97005 * 126.55204 * 359.97438 * 4 3 2 6 6 C 1.37535 * 106.88774 * 180.02562 * 4 3 2 7 7 C 1.39994 * 125.96817 * 180.02562 * 6 4 3 8 8 H 1.08009 * 119.99441 * 359.97438 * 7 6 4 9 9 C 1.40232 * 120.00808 * 180.02562 * 7 6 4 10 10 N 1.30690 * 119.99483 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00550 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47228 * 89.99600 * 11 9 7 13 13 H 1.48499 * 109.46991 * 209.99915 * 11 9 7 14 14 H 1.48505 * 109.47122 * 329.99398 * 11 9 7 15 15 N 1.32985 * 108.07251 * 359.97438 * 6 4 3 16 16 C 1.32756 * 109.22539 * 359.72924 * 15 6 4 17 17 C 1.50698 * 125.69058 * 180.26984 * 16 15 6 18 18 C 1.53005 * 109.47066 * 244.82176 * 17 16 15 19 19 C 1.53001 * 109.47190 * 4.82436 * 17 16 15 20 20 C 1.53001 * 109.47146 * 124.82455 * 17 16 15 21 21 H 1.08993 * 109.47353 * 66.51091 * 1 2 3 22 22 H 1.09003 * 109.47025 * 186.51884 * 1 2 3 23 23 H 1.09004 * 109.46694 * 306.51417 * 1 2 3 24 24 H 1.09005 * 109.46893 * 119.99687 * 2 1 3 25 25 H 1.08992 * 109.46801 * 239.99426 * 2 1 3 26 26 H 0.97003 * 120.00061 * 180.02562 * 10 9 7 27 27 H 1.09005 * 109.46684 * 52.09487 * 18 17 16 28 28 H 1.08997 * 109.46992 * 172.09061 * 18 17 16 29 29 H 1.08997 * 109.47151 * 292.10183 * 18 17 16 30 30 H 1.08999 * 109.47158 * 60.00583 * 19 17 16 31 31 H 1.09002 * 109.46860 * 179.97438 * 19 17 16 32 32 H 1.08995 * 109.47180 * 299.99686 * 19 17 16 33 33 H 1.09006 * 109.47190 * 68.10111 * 20 17 16 34 34 H 1.09003 * 109.46829 * 188.09019 * 20 17 16 35 35 H 1.08992 * 109.47193 * 308.09542 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2321 2.2089 -1.0955 5 1 2.0783 1.9616 -2.0209 6 6 2.6941 3.4205 -0.6373 7 6 3.0276 4.5260 -1.4288 8 1 2.9300 4.4701 -2.5030 9 6 3.4892 5.7056 -0.8272 10 7 3.6077 5.7731 0.4726 11 14 3.9335 7.1809 -1.8833 12 1 2.7345 8.0377 -2.0663 13 1 5.0040 7.9636 -1.2150 14 1 4.4153 6.7141 -3.2082 15 7 2.7677 3.3591 0.6891 16 6 2.3660 2.1603 1.0942 17 6 2.2954 1.6939 2.5254 18 6 3.2903 0.5513 2.7391 19 6 2.6447 2.8554 3.4581 20 6 0.8797 1.2015 2.8321 21 1 -0.3634 0.4096 -0.9424 22 1 -0.3633 -1.0211 0.1167 23 1 -0.3633 0.6115 0.8260 24 1 1.8934 -0.5138 0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 3.9267 6.5891 0.8889 27 1 4.2759 0.8573 2.3881 28 1 3.3419 0.3082 3.8003 29 1 2.9620 -0.3255 2.1809 30 1 1.9359 3.6693 3.3060 31 1 2.5932 2.5181 4.4933 32 1 3.6533 3.2062 3.2396 33 1 0.6835 0.2874 2.2716 34 1 0.7885 0.9997 3.8995 35 1 0.1586 1.9663 2.5440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260732600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = 25.954310 kcal Electronic energy + Delta-G solvation = -15818.284692 eV Core-core repulsion = 13430.182567 eV Total energy + Delta-G solvation = -2388.102124 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.06477 -35.95311 -33.48049 -32.64113 -29.93018 -28.01540 -26.65066 -26.37965 -24.88474 -22.34984 -20.34622 -19.70708 -17.34629 -16.89023 -15.57032 -14.58995 -14.04461 -13.73129 -13.61370 -13.34890 -12.75735 -12.61987 -12.48569 -11.70357 -11.60871 -11.40601 -11.26099 -11.08522 -10.94329 -10.84492 -10.50786 -10.37659 -10.20041 -10.06492 -9.88770 -9.78173 -9.12225 -7.97713 -7.64312 -6.78772 -6.32220 -4.16797 3.08637 3.19263 3.21536 3.69808 4.08529 4.71040 4.90561 5.56382 5.63336 5.64656 5.65139 5.78346 5.91630 6.02851 6.20372 6.22532 6.28643 6.32306 6.40265 6.47873 6.55883 6.57970 6.68091 6.73028 6.84952 6.90784 7.16939 7.25129 7.35632 7.50469 7.79267 8.17247 8.36040 8.69048 9.06559 9.52011 10.35037 10.60802 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.009314 C = 0.007837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.867943 B = 3005.538515 C = 3572.128774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C -0.140 4.140 4 N -0.619 5.619 5 H 0.390 0.610 6 C 0.374 3.626 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.084 3.916 10 N -0.742 5.742 11 Si 0.908 3.092 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.266 1.266 15 N -0.503 5.503 16 C 0.034 3.966 17 C 0.020 3.980 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.139 4.139 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.270 0.730 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -6.939 1.622 7.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 C -0.252 4.252 4 N -0.226 5.226 5 H 0.224 0.776 6 C 0.129 3.871 7 C -0.507 4.507 8 H 0.092 0.908 9 C -0.140 4.140 10 N -0.367 5.367 11 Si 0.733 3.267 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.191 1.191 15 N -0.224 5.224 16 C -0.101 4.101 17 C 0.018 3.982 18 C -0.191 4.191 19 C -0.173 4.173 20 C -0.197 4.197 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.484 -6.205 2.420 7.109 hybrid contribution -0.155 -0.020 -1.645 1.652 sum -2.640 -6.225 0.775 6.806 Atomic orbital electron populations 1.21974 0.96855 1.00048 1.01954 1.19721 0.94256 0.92049 1.00734 1.20085 1.21899 0.95077 0.88181 1.43220 1.58672 1.13855 1.06863 0.77586 1.20107 0.93766 0.84038 0.89198 1.18049 1.44430 0.95060 0.93157 0.90768 1.25630 0.94281 0.99110 0.94949 1.70014 1.31000 1.26200 1.09524 0.86353 0.78624 0.81227 0.80539 1.19827 1.20391 1.19077 1.71155 1.26617 1.17077 1.07595 1.20184 1.04694 0.93037 0.92164 1.18641 0.93919 0.94416 0.91186 1.21894 0.99580 0.97921 0.99732 1.21534 1.02937 0.97529 0.95328 1.22073 0.96855 1.01036 0.99690 0.93769 0.93924 0.91852 0.91082 0.93788 0.91949 0.92923 0.93643 0.93009 0.92623 0.95080 0.92150 0.92208 0.93801 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.19 37.16 0.34 -2.00 16 2 C -0.03 -0.51 5.52 -27.88 -0.15 -0.66 16 3 C -0.14 -3.11 6.31 -81.28 -0.51 -3.62 16 4 N -0.62 -14.66 6.25 -8.21 -0.05 -14.71 16 5 H 0.39 8.05 8.96 -40.82 -0.37 7.69 16 6 C 0.37 10.34 7.61 -155.61 -1.18 9.16 16 7 C -0.47 -12.78 9.45 -38.18 -0.36 -13.14 16 8 H 0.07 1.89 7.85 -52.48 -0.41 1.48 16 9 C 0.08 2.22 5.50 -17.29 -0.10 2.12 16 10 N -0.74 -20.72 11.90 55.56 0.66 -20.06 16 11 Si 0.91 19.47 29.56 -169.99 -5.03 14.44 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 N -0.50 -14.14 8.70 -8.95 -0.08 -14.22 16 16 C 0.03 0.81 5.48 -82.92 -0.45 0.36 16 17 C 0.02 0.39 0.75 -155.66 -0.12 0.27 16 18 C -0.13 -2.32 8.29 37.16 0.31 -2.01 16 19 C -0.12 -2.36 7.94 37.16 0.30 -2.06 16 20 C -0.14 -2.38 7.14 37.16 0.27 -2.11 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.04 5.82 -51.93 -0.30 0.73 16 24 H 0.07 1.16 4.44 -51.93 -0.23 0.93 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 27 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 28 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.05 0.83 5.56 -51.93 -0.29 0.54 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.94 4.32 -51.93 -0.22 0.72 16 34 H 0.04 0.65 8.13 -51.93 -0.42 0.22 16 35 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 LS Contribution 277.41 15.07 4.18 4.18 Total: -1.00 -30.21 277.41 -7.16 -37.37 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.18 Total: 6.71 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.67 Total: -13.71 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.53 Total: -48.99 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.21 -7.16 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.326 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds