Wall clock time and date at job start Mon Mar 30 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31184 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00247 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00119 * 3 2 1 6 6 H 1.48498 * 109.47481 * 150.00167 * 3 2 1 7 7 C 1.39153 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99716 * 0.27564 * 7 2 1 10 10 N 1.40362 * 126.82863 * 359.40954 * 9 7 2 11 11 N 1.28721 * 109.20613 * 179.84737 * 10 9 7 12 12 C 1.34074 * 110.35699 * 0.42577 * 11 10 9 13 13 C 1.37241 * 126.82205 * 179.72329 * 9 7 2 14 14 C 1.41016 * 134.62020 * 359.97438 * 13 9 7 15 15 O 1.22012 * 120.11101 * 0.02562 * 14 13 9 16 16 N 1.34771 * 119.77687 * 180.02562 * 14 13 9 17 17 H 0.96997 * 119.25743 * 179.97438 * 16 14 13 18 18 N 1.39683 * 121.47368 * 359.96020 * 16 14 13 19 19 C 1.30746 * 121.57924 * 0.02562 * 18 16 14 20 20 O 1.35737 * 120.23312 * 180.02562 * 19 18 16 21 21 H 0.96996 * 120.00198 * 359.97438 * 1 2 3 22 22 H 0.96700 * 113.99392 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2459 1.6176 0.0000 4 1 2.4933 2.0464 -1.4001 5 1 1.4433 2.6526 0.7001 6 1 3.5434 1.4401 0.7000 7 6 2.0076 -1.2051 -0.0005 8 1 3.0876 -1.2051 -0.0010 9 7 1.3221 -2.3923 -0.0068 10 7 -0.0716 -2.5592 -0.0015 11 7 -0.3476 -3.8164 -0.0135 12 6 0.7802 -4.5415 -0.0176 13 6 1.8622 -3.6540 -0.0134 14 6 3.1747 -4.1695 -0.0166 15 8 4.1303 -3.4109 -0.0127 16 7 3.3700 -5.5030 -0.0240 17 1 4.2760 -5.8494 -0.0265 18 7 2.2970 -6.3972 -0.0278 19 6 1.0579 -5.9799 -0.0249 20 8 0.0358 -6.8731 -0.0282 21 1 -0.4850 0.8400 0.0004 22 1 0.3211 -7.7970 -0.0331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260747891.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:37 Heat of formation + Delta-G solvation = 53.795990 kcal Electronic energy + Delta-G solvation = -14834.642796 eV Core-core repulsion = 12007.115535 eV Total energy + Delta-G solvation = -2827.527262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 223.049 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.89739 -38.67984 -37.92700 -35.44699 -34.60394 -31.93293 -30.43304 -29.25934 -26.36965 -23.68129 -23.07842 -21.15158 -19.20344 -18.79824 -17.48893 -16.31115 -15.86688 -15.40653 -15.40166 -14.55469 -13.81549 -13.79052 -13.49950 -13.10515 -12.34744 -11.99866 -11.69481 -11.25797 -11.05632 -10.82167 -10.44168 -9.97940 -9.83039 -9.26424 -9.19022 -8.41312 -7.67592 -7.41422 -5.10423 1.74420 2.23207 2.71255 2.80107 2.84918 2.98103 3.39232 3.53598 3.95295 3.99097 4.20479 4.47521 5.24471 5.29969 6.08347 6.14439 6.34001 6.43531 7.00533 7.25380 7.45889 7.69436 7.88872 8.42811 8.46621 8.79789 9.51764 9.61105 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.042058 B = 0.010129 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.589462 B = 2763.738460 C = 3419.478657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.032 3.968 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.224 4.224 8 H 0.149 0.851 9 N -0.084 5.084 10 N -0.094 5.094 11 N -0.257 5.257 12 C -0.056 4.056 13 C -0.164 4.164 14 C 0.575 3.425 15 O -0.562 6.562 16 N -0.525 5.525 17 H 0.429 0.571 18 N -0.357 5.357 19 C 0.412 3.588 20 O -0.442 6.442 21 H 0.298 0.702 22 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -3.368 -0.027 4.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.370 4.370 8 H 0.167 0.833 9 N 0.150 4.850 10 N -0.070 5.070 11 N -0.113 5.113 12 C -0.212 4.212 13 C -0.299 4.299 14 C 0.369 3.631 15 O -0.441 6.441 16 N -0.276 5.276 17 H 0.273 0.727 18 N -0.196 5.196 19 C 0.189 3.811 20 O -0.233 6.233 21 H 0.109 0.891 22 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.937 -2.385 -0.017 3.073 hybrid contribution 1.447 0.165 -0.017 1.456 sum 3.384 -2.220 -0.034 4.047 Atomic orbital electron populations 1.70101 1.07009 1.31196 1.25333 1.26302 0.96165 1.02075 0.94798 0.85386 0.79797 0.76705 0.80199 1.18332 1.19003 1.17391 1.21302 0.94277 0.79868 1.41596 0.83328 1.46533 1.07038 1.03339 1.28047 1.82744 0.86279 1.06510 1.31485 1.73906 1.24560 0.99738 1.13143 1.19751 0.90252 0.90284 1.20895 1.19149 0.94337 0.86861 1.29519 1.15860 0.87683 0.82201 0.77397 1.90865 1.43707 1.56061 1.53494 1.45866 1.06320 1.02117 1.73320 0.72704 1.74450 0.94778 1.19657 1.30678 1.20386 0.85231 0.85583 0.89918 1.85282 1.28712 1.19850 1.89466 0.89107 0.74773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.27 11.87 55.50 0.66 -16.61 14 2 C 0.03 0.73 5.50 -17.49 -0.10 0.64 14 3 Si 0.96 16.61 29.55 -169.99 -5.02 11.59 14 4 H -0.26 -4.38 7.11 56.52 0.40 -3.98 14 5 H -0.27 -4.40 7.11 56.52 0.40 -4.00 14 6 H -0.25 -4.28 7.11 56.52 0.40 -3.88 14 7 C -0.22 -5.68 10.10 -14.86 -0.15 -5.83 14 8 H 0.15 3.62 6.79 -52.49 -0.36 3.27 14 9 N -0.08 -2.32 3.78 -9.26 -0.03 -2.35 14 10 N -0.09 -2.67 11.64 60.35 0.70 -1.97 14 11 N -0.26 -6.98 12.33 33.19 0.41 -6.57 14 12 C -0.06 -1.41 7.47 -82.92 -0.62 -2.03 14 13 C -0.16 -4.26 6.91 -83.75 -0.58 -4.84 14 14 C 0.58 13.54 7.79 -15.21 -0.12 13.43 14 15 O -0.56 -14.02 16.69 4.91 0.08 -13.94 14 16 N -0.52 -10.12 6.60 29.00 0.19 -9.93 14 17 H 0.43 6.75 8.91 -182.92 -1.63 5.12 14 18 N -0.36 -6.60 11.78 31.84 0.38 -6.23 14 19 C 0.41 8.34 8.19 -14.69 -0.12 8.22 14 20 O -0.44 -7.28 13.61 -18.92 -0.26 -7.53 14 21 H 0.30 6.29 8.30 -40.82 -0.34 5.95 14 22 H 0.40 4.04 8.98 45.56 0.41 4.45 14 LS Contribution 218.12 15.07 3.29 3.29 Total: -1.00 -31.74 218.12 -2.00 -33.74 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -0.71 Total: 6.93 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.68 Total: 9.58 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 2.30 Total: -43.66 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.18 Total: -21.47 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.02 Total: 11.59 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.74 -2.00 -33.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260747891.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.540 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds