Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47069 * 2 1 4 4 C 1.39274 * 126.40711 * 276.31677 * 3 2 1 5 5 C 1.41599 * 126.55724 * 359.97438 * 4 3 2 6 6 H 1.08004 * 119.99787 * 0.02562 * 5 4 3 7 7 C 1.39692 * 120.00020 * 180.02562 * 5 4 3 8 8 N 1.31019 * 120.00339 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99674 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47229 * 60.00344 * 9 7 5 11 11 H 1.48509 * 109.46899 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47206 * 300.00050 * 9 7 5 13 13 C 1.41878 * 106.88755 * 179.97438 * 4 3 2 14 14 N 1.30312 * 108.04658 * 359.97438 * 13 4 3 15 15 N 1.34503 * 126.40235 * 96.00070 * 3 2 1 16 16 C 1.46495 * 125.67937 * 0.02562 * 15 3 2 17 17 C 1.52997 * 109.47430 * 66.38671 * 16 15 3 18 18 C 1.53007 * 109.47085 * 186.38614 * 16 15 3 19 19 C 1.52997 * 109.47030 * 306.38375 * 16 15 3 20 20 H 1.08997 * 109.46617 * 56.10807 * 1 2 3 21 21 H 1.08999 * 109.46704 * 176.10532 * 1 2 3 22 22 H 1.08994 * 109.47175 * 296.10728 * 1 2 3 23 23 H 1.09004 * 109.46863 * 119.99691 * 2 1 3 24 24 H 1.09000 * 109.47266 * 240.00116 * 2 1 3 25 25 H 0.97000 * 120.00626 * 179.97438 * 8 7 5 26 26 H 1.08005 * 125.97904 * 180.02562 * 13 4 3 27 27 H 1.09005 * 109.46822 * 54.54982 * 17 16 15 28 28 H 1.08997 * 109.47431 * 174.55012 * 17 16 15 29 29 H 1.09000 * 109.47111 * 294.55408 * 17 16 15 30 30 H 1.08996 * 109.46859 * 59.99810 * 18 16 15 31 31 H 1.08998 * 109.46971 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.46750 * 299.99865 * 18 16 15 33 33 H 1.08999 * 109.46753 * 68.07652 * 19 16 15 34 34 H 1.09004 * 109.47192 * 188.07254 * 19 16 15 35 35 H 1.08997 * 109.47460 * 308.07256 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1916 2.2413 -1.1141 5 6 1.9134 1.8997 -2.4598 6 1 1.5374 0.9162 -2.7006 7 6 2.1251 2.8346 -3.4759 8 7 2.5816 4.0275 -3.1839 9 14 1.7573 2.3841 -5.2511 10 1 0.3217 2.0285 -5.3843 11 1 2.0647 3.5415 -6.1294 12 1 2.5938 1.2241 -5.6508 13 6 2.6860 3.4849 -0.6429 14 7 2.8091 3.4058 0.6520 15 7 2.4051 2.1357 1.0766 16 6 2.3928 1.6620 2.4628 17 6 3.4272 0.5472 2.6302 18 6 2.7358 2.8211 3.4009 19 6 1.0024 1.1232 2.8053 20 1 -0.3632 0.5731 -0.8531 21 1 -0.3633 -1.0253 -0.0698 22 1 -0.3633 0.4522 0.9228 23 1 1.8933 -0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 2.7290 4.6766 -3.8894 26 1 2.9187 4.3467 -1.2508 27 1 4.4015 0.9023 2.2943 28 1 3.4869 0.2615 3.6803 29 1 3.1303 -0.3163 2.0350 30 1 1.9988 3.6152 3.2817 31 1 2.7262 2.4687 4.4324 32 1 3.7264 3.2049 3.1569 33 1 0.8162 0.2114 2.2377 34 1 0.9500 0.9043 3.8718 35 1 0.2504 1.8698 2.5503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260757134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = 55.920542 kcal Electronic energy + Delta-G solvation = -15896.743145 eV Core-core repulsion = 13509.940454 eV Total energy + Delta-G solvation = -2386.802691 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64825 -35.95755 -33.27113 -32.82656 -28.79719 -28.18831 -27.03211 -26.91834 -24.64266 -22.39503 -20.76326 -19.21708 -17.52028 -16.57218 -15.09454 -14.71187 -14.41477 -14.18829 -13.47726 -13.14142 -12.66852 -12.50154 -12.04104 -11.92134 -11.72264 -11.53849 -11.41571 -11.15604 -11.08236 -11.04872 -10.85979 -10.61139 -10.41289 -10.21933 -9.99672 -9.66424 -9.14113 -8.64531 -7.54646 -6.99381 -6.34056 -3.86991 3.11067 3.23272 3.26289 3.50724 3.89655 4.19807 4.50530 5.10488 5.30098 5.39907 5.64242 5.72603 5.80984 5.81908 5.86213 6.01066 6.06358 6.11792 6.15371 6.23887 6.30405 6.48306 6.59942 6.62132 6.66240 6.78777 6.98398 7.07990 7.41789 7.77883 7.79114 8.26838 8.67868 8.79210 9.19071 9.27110 9.66411 10.65462 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.038215 B = 0.009158 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.527149 B = 3056.768992 C = 3525.881160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.083 4.083 4 C -0.017 4.017 5 C -0.431 4.431 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.844 5.844 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.025 3.975 14 N -0.339 5.339 15 N -0.378 5.378 16 C 0.193 3.807 17 C -0.159 4.159 18 C -0.134 4.134 19 C -0.165 4.165 20 H 0.062 0.938 21 H 0.040 0.960 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.272 0.728 26 H 0.200 0.800 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -5.553 7.700 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 C -0.204 4.204 4 C -0.027 4.027 5 C -0.466 4.466 6 H 0.084 0.916 7 C -0.145 4.145 8 N -0.476 5.476 9 Si 0.737 3.263 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.197 1.197 13 C -0.161 4.161 14 N -0.160 5.160 15 N -0.168 5.168 16 C 0.108 3.892 17 C -0.217 4.217 18 C -0.192 4.192 19 C -0.223 4.223 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.216 0.784 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.208 -4.778 8.714 10.011 hybrid contribution -0.401 -0.582 -1.692 1.834 sum -1.609 -5.360 7.022 8.979 Atomic orbital electron populations 1.21916 0.96590 0.99905 1.02298 1.19727 0.94584 0.91773 1.00547 1.20604 1.16678 0.95567 0.87575 1.17924 1.00913 0.91440 0.92431 1.18674 1.39123 0.98927 0.89846 0.91553 1.25603 0.93887 0.94468 1.00505 1.69454 1.39262 1.05025 1.33881 0.86342 0.79298 0.78342 0.82312 1.19662 1.20822 1.19671 1.25014 1.00703 1.00672 0.89744 1.76533 1.24649 0.99323 1.15525 1.47512 1.55567 1.10155 1.03522 1.20086 0.94947 0.93847 0.80307 1.22327 0.99505 0.98682 1.01227 1.21784 1.03075 0.97554 0.96789 1.22496 0.96408 1.02356 1.01016 0.91910 0.94088 0.93163 0.93124 0.91563 0.91735 0.78426 0.92211 0.92052 0.91801 0.92051 0.92612 0.91724 0.90815 0.92127 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.40 37.16 0.35 -2.29 16 2 C -0.03 -0.54 5.12 -27.88 -0.14 -0.68 16 3 C -0.08 -1.97 5.83 -81.04 -0.47 -2.44 16 4 C -0.02 -0.47 5.93 -106.84 -0.63 -1.11 16 5 C -0.43 -11.80 9.16 -37.76 -0.35 -12.15 16 6 H 0.07 1.75 7.53 -52.48 -0.39 1.35 16 7 C 0.07 1.72 5.49 -17.36 -0.10 1.62 16 8 N -0.84 -22.77 10.32 55.54 0.57 -22.19 16 9 Si 0.91 20.02 29.56 -169.99 -5.02 14.99 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.03 0.69 10.91 -16.80 -0.18 0.51 16 14 N -0.34 -8.69 11.51 30.97 0.36 -8.33 16 15 N -0.38 -8.60 3.44 -43.64 -0.15 -8.75 16 16 C 0.19 3.41 1.06 -131.82 -0.14 3.27 16 17 C -0.16 -2.46 8.49 37.16 0.32 -2.15 16 18 C -0.13 -2.17 7.98 37.16 0.30 -1.88 16 19 C -0.16 -2.52 7.24 37.16 0.27 -2.25 16 20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.85 5.72 -51.93 -0.30 0.55 16 23 H 0.05 0.87 4.19 -51.93 -0.22 0.66 16 24 H 0.07 1.33 7.88 -51.93 -0.41 0.92 16 25 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 26 H 0.20 5.60 5.77 -52.48 -0.30 5.30 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.99 5.64 -51.93 -0.29 0.69 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.07 1.11 4.05 -51.93 -0.21 0.90 16 34 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.06 1.01 8.02 -51.93 -0.42 0.60 16 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -29.16 274.95 -5.94 -35.10 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.05 Total: 4.58 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.78 Total: -19.54 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.78 Total: -39.27 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.16 -5.94 -35.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.021 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds