Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47069 * 2 1 4 4 C 1.39274 * 126.40711 * 276.31677 * 3 2 1 5 5 C 1.41599 * 126.55724 * 359.97438 * 4 3 2 6 6 H 1.08004 * 119.99787 * 0.02562 * 5 4 3 7 7 C 1.39692 * 120.00020 * 180.02562 * 5 4 3 8 8 N 1.31019 * 120.00339 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99674 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47229 * 60.00344 * 9 7 5 11 11 H 1.48509 * 109.46899 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47206 * 300.00050 * 9 7 5 13 13 C 1.41878 * 106.88755 * 179.97438 * 4 3 2 14 14 N 1.30312 * 108.04658 * 359.97438 * 13 4 3 15 15 N 1.34503 * 126.40235 * 96.00070 * 3 2 1 16 16 C 1.46495 * 125.67937 * 0.02562 * 15 3 2 17 17 C 1.52997 * 109.47430 * 66.38671 * 16 15 3 18 18 C 1.53007 * 109.47085 * 186.38614 * 16 15 3 19 19 C 1.52997 * 109.47030 * 306.38375 * 16 15 3 20 20 H 1.08997 * 109.46617 * 56.10807 * 1 2 3 21 21 H 1.08999 * 109.46704 * 176.10532 * 1 2 3 22 22 H 1.08994 * 109.47175 * 296.10728 * 1 2 3 23 23 H 1.09004 * 109.46863 * 119.99691 * 2 1 3 24 24 H 1.09000 * 109.47266 * 240.00116 * 2 1 3 25 25 H 0.97000 * 120.00626 * 179.97438 * 8 7 5 26 26 H 1.08005 * 125.97904 * 180.02562 * 13 4 3 27 27 H 1.09005 * 109.46822 * 54.54982 * 17 16 15 28 28 H 1.08997 * 109.47431 * 174.55012 * 17 16 15 29 29 H 1.09000 * 109.47111 * 294.55408 * 17 16 15 30 30 H 1.08996 * 109.46859 * 59.99810 * 18 16 15 31 31 H 1.08998 * 109.46971 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.46750 * 299.99865 * 18 16 15 33 33 H 1.08999 * 109.46753 * 68.07652 * 19 16 15 34 34 H 1.09004 * 109.47192 * 188.07254 * 19 16 15 35 35 H 1.08997 * 109.47460 * 308.07256 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1916 2.2413 -1.1141 5 6 1.9134 1.8997 -2.4598 6 1 1.5374 0.9162 -2.7006 7 6 2.1251 2.8346 -3.4759 8 7 2.5816 4.0275 -3.1839 9 14 1.7573 2.3841 -5.2511 10 1 0.3217 2.0285 -5.3843 11 1 2.0647 3.5415 -6.1294 12 1 2.5938 1.2241 -5.6508 13 6 2.6860 3.4849 -0.6429 14 7 2.8091 3.4058 0.6520 15 7 2.4051 2.1357 1.0766 16 6 2.3928 1.6620 2.4628 17 6 3.4272 0.5472 2.6302 18 6 2.7358 2.8211 3.4009 19 6 1.0024 1.1232 2.8053 20 1 -0.3632 0.5731 -0.8531 21 1 -0.3633 -1.0253 -0.0698 22 1 -0.3633 0.4522 0.9228 23 1 1.8933 -0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 2.7290 4.6766 -3.8894 26 1 2.9187 4.3467 -1.2508 27 1 4.4015 0.9023 2.2943 28 1 3.4869 0.2615 3.6803 29 1 3.1303 -0.3163 2.0350 30 1 1.9988 3.6152 3.2817 31 1 2.7262 2.4687 4.4324 32 1 3.7264 3.2049 3.1569 33 1 0.8162 0.2114 2.2377 34 1 0.9500 0.9043 3.8718 35 1 0.2504 1.8698 2.5503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260757134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = 38.712508 kcal Electronic energy + Delta-G solvation = -15897.489341 eV Core-core repulsion = 13509.940454 eV Total energy + Delta-G solvation = -2387.548887 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48009 -37.50102 -35.15020 -34.50179 -30.66014 -30.02262 -28.32013 -28.19290 -26.51748 -24.05588 -22.46610 -21.14473 -19.17268 -18.49439 -16.78480 -16.51726 -15.89607 -15.68370 -15.06329 -14.79799 -14.21766 -14.18326 -13.54398 -13.29967 -13.14972 -12.98391 -12.94462 -12.83787 -12.76952 -12.62134 -12.52572 -12.05622 -11.92252 -11.78040 -11.74790 -11.31994 -11.06437 -10.60640 -9.42681 -8.97783 -8.28056 -5.89898 1.34071 1.43578 1.54546 1.64134 2.23775 2.36340 2.47619 3.62455 3.75714 3.96224 4.07989 4.24536 4.27200 4.58129 4.66642 4.70010 4.72614 4.78586 4.84468 4.88456 4.93233 5.04706 5.12001 5.13608 5.24963 5.34055 5.36811 5.41814 5.60821 5.81460 5.86833 6.22196 6.67136 6.91322 7.23578 7.26223 7.68018 8.72576 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.038215 B = 0.009158 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.527149 B = 3056.768992 C = 3525.881160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.060 4.060 4 C -0.070 4.070 5 C -0.459 4.459 6 H 0.067 0.933 7 C 0.015 3.985 8 N -0.875 5.875 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.266 1.266 13 C -0.010 4.010 14 N -0.356 5.356 15 N -0.365 5.365 16 C 0.169 3.831 17 C -0.153 4.153 18 C -0.130 4.130 19 C -0.159 4.159 20 H 0.032 0.968 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.274 0.726 26 H 0.180 0.820 27 H 0.038 0.962 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -8.093 9.426 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.080 4.080 5 C -0.494 4.494 6 H 0.085 0.915 7 C -0.191 4.191 8 N -0.509 5.509 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.190 1.190 13 C -0.194 4.194 14 N -0.180 5.180 15 N -0.154 5.154 16 C 0.087 3.913 17 C -0.211 4.211 18 C -0.187 4.187 19 C -0.216 4.216 20 H 0.052 0.948 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.196 0.804 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.996 -7.308 10.471 12.924 hybrid contribution -0.146 0.129 -1.980 1.989 sum -2.141 -7.179 8.492 11.324 Atomic orbital electron populations 1.21833 0.94703 1.01929 1.01471 1.19905 0.96067 0.88920 1.01850 1.21311 1.13284 0.96925 0.86998 1.18357 1.03389 0.92370 0.93899 1.18901 1.40461 0.99377 0.90658 0.91460 1.26469 0.93675 0.94267 1.04713 1.69592 1.40309 1.05930 1.35036 0.85253 0.79208 0.78166 0.76899 1.19043 1.20216 1.19044 1.24773 1.03162 1.00929 0.90520 1.76440 1.25676 1.01204 1.14668 1.48131 1.52694 1.08933 1.05639 1.20824 0.97657 0.95288 0.77557 1.22293 0.97302 0.97367 1.04150 1.21787 1.01269 0.96661 0.99021 1.22469 0.93639 1.01612 1.03930 0.94841 0.90294 0.92260 0.89908 0.92113 0.91576 0.80355 0.94293 0.87617 0.91547 0.93860 0.88018 0.93640 0.90287 0.87817 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.40 71.98 0.68 -3.96 16 2 C -0.03 -1.06 5.12 29.85 0.15 -0.90 16 3 C -0.06 -2.85 5.83 42.40 0.25 -2.60 16 4 C -0.07 -3.99 5.93 -21.30 -0.13 -4.12 16 5 C -0.46 -26.04 9.16 23.45 0.21 -25.83 16 6 H 0.07 3.63 7.53 -2.91 -0.02 3.61 16 7 C 0.01 0.80 5.49 85.17 0.47 1.27 16 8 N -0.88 -49.66 10.32 21.79 0.22 -49.44 16 9 Si 0.98 42.02 29.56 68.60 2.03 44.05 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 C -0.01 -0.59 10.91 85.82 0.94 0.35 16 14 N -0.36 -18.90 11.51 -55.94 -0.64 -19.54 16 15 N -0.37 -16.49 3.44 -291.99 -1.00 -17.49 16 16 C 0.17 5.51 1.06 3.61 0.00 5.51 16 17 C -0.15 -4.15 8.49 71.98 0.61 -3.54 16 18 C -0.13 -3.90 7.98 71.98 0.57 -3.32 16 19 C -0.16 -4.20 7.24 71.98 0.52 -3.68 16 20 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.06 1.82 5.72 -2.39 -0.01 1.81 16 23 H 0.08 2.53 4.19 -2.38 -0.01 2.52 16 24 H 0.06 2.34 7.88 -2.39 -0.02 2.32 16 25 H 0.27 14.39 8.30 -92.71 -0.77 13.62 16 26 H 0.18 10.92 5.77 -2.91 -0.02 10.91 16 27 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.76 5.64 -2.39 -0.01 1.75 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.52 8.11 -2.39 -0.02 1.50 16 33 H 0.08 2.01 4.05 -2.39 -0.01 2.00 16 34 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 35 H 0.04 1.25 8.02 -2.39 -0.02 1.23 16 Total: -1.00 -67.49 274.95 5.96 -61.53 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.07 Total: 21.73 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 4.28 Total: -40.83 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.42 Total: -86.48 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -67.49 5.96 -61.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.240 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds