Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47109 * 2 1 4 4 C 1.35306 * 126.12780 * 270.02646 * 3 2 1 5 5 C 1.50700 * 126.04114 * 359.97344 * 4 3 2 6 6 C 1.50702 * 109.46869 * 85.00125 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.39870 * 107.92180 * 180.24283 * 4 3 2 15 15 N 1.30834 * 108.20254 * 359.55136 * 14 4 3 16 16 N 1.34955 * 126.12407 * 89.99815 * 3 2 1 17 17 C 1.46499 * 126.03721 * 359.97438 * 16 3 2 18 18 C 1.53008 * 109.46562 * 120.00295 * 17 16 3 19 19 C 1.52997 * 109.47057 * 239.99910 * 17 16 3 20 20 H 1.09003 * 109.47361 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47496 * 299.99563 * 1 2 3 22 22 H 1.09000 * 109.47631 * 60.00274 * 1 2 3 23 23 H 1.09003 * 109.47349 * 239.99905 * 2 1 3 24 24 H 1.09007 * 109.46998 * 119.99725 * 2 1 3 25 25 H 1.09004 * 109.47210 * 325.00418 * 5 4 3 26 26 H 1.08994 * 109.47551 * 205.00070 * 5 4 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 28 28 H 1.08003 * 125.90136 * 179.74088 * 14 4 3 29 29 H 1.08997 * 109.47128 * 0.02562 * 17 16 3 30 30 H 1.08994 * 109.46986 * 59.99966 * 18 17 16 31 31 H 1.08999 * 109.46838 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46993 * 299.99398 * 18 17 16 33 33 H 1.08999 * 109.46998 * 60.00314 * 19 17 16 34 34 H 1.08999 * 109.46952 * 180.02562 * 19 17 16 35 35 H 1.09007 * 109.47365 * 300.00295 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2977 2.1731 -1.0929 5 6 2.1438 1.7381 -2.5275 6 6 0.7186 1.9533 -2.9675 7 1 -0.0034 2.3644 -2.2774 8 6 0.3378 1.6312 -4.2529 9 7 1.2171 1.1310 -5.0933 10 14 -1.4269 1.9051 -4.8006 11 1 -2.2116 2.4744 -3.6758 12 1 -1.4487 2.8493 -5.9466 13 1 -2.0234 0.6098 -5.2151 14 6 2.7461 3.4239 -0.6559 15 7 2.7406 3.4258 0.6525 16 7 2.2974 2.1710 1.0901 17 6 2.1473 1.7480 2.4846 18 6 3.5018 1.8313 3.1914 19 6 1.1464 2.6649 3.1907 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 2.3956 0.6812 -2.6157 26 1 2.8113 2.3246 -3.1587 27 1 0.9491 0.9040 -5.9976 28 1 3.0425 4.2471 -1.2891 29 1 1.7842 0.7208 2.5157 30 1 3.8653 2.8584 3.1602 31 1 3.3901 1.5171 4.2291 32 1 4.2148 1.1781 2.6884 33 1 0.1815 2.6056 2.6872 34 1 1.0351 2.3505 4.2284 35 1 1.5100 3.6921 3.1596 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260776775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = 49.636016 kcal Electronic energy + Delta-G solvation = -15482.030855 eV Core-core repulsion = 13094.955646 eV Total energy + Delta-G solvation = -2387.075208 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59253 -35.45615 -33.71485 -32.78792 -30.27338 -28.98823 -27.23732 -26.35974 -23.31757 -22.47211 -22.27229 -18.94912 -18.43918 -16.26962 -16.14688 -14.60583 -14.57987 -14.27338 -13.83529 -13.63024 -12.90284 -12.63739 -12.41311 -12.23601 -12.08283 -11.81208 -11.64990 -11.42654 -11.23041 -11.12922 -10.92269 -10.64833 -10.43675 -10.32200 -9.93254 -9.37858 -9.27059 -8.48575 -8.31721 -7.24077 -5.93015 -3.95084 2.63282 3.10926 3.33347 3.41340 3.45526 3.78691 4.52740 4.69563 5.02626 5.08164 5.25007 5.40482 5.50770 5.52778 5.53263 5.74245 5.77503 5.86566 5.89545 6.05124 6.14880 6.19571 6.27203 6.47940 6.62374 6.73035 6.90549 7.09723 7.53791 7.68460 7.84838 7.94079 8.04527 8.50812 8.55455 9.10471 9.67629 11.16089 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.037695 B = 0.007765 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.635120 B = 3604.955149 C = 3794.809811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.061 3.939 4 C -0.181 4.181 5 C 0.087 3.913 6 C -0.498 4.498 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.041 3.959 15 N -0.314 5.314 16 N -0.377 5.377 17 C 0.160 3.840 18 C -0.158 4.158 19 C -0.158 4.158 20 H 0.052 0.948 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.259 0.741 28 H 0.173 0.827 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 -1.506 13.956 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.063 4.063 4 C -0.191 4.191 5 C 0.049 3.951 6 C -0.537 4.537 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.144 4.144 15 N -0.135 5.135 16 N -0.163 5.163 17 C 0.057 3.943 18 C -0.216 4.216 19 C -0.216 4.216 20 H 0.071 0.929 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.109 0.891 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.190 0.810 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.290 -0.924 14.978 15.062 hybrid contribution -1.165 -0.238 -1.168 1.667 sum 0.125 -1.162 13.809 13.859 Atomic orbital electron populations 1.21757 0.94495 1.01233 1.02975 1.20010 0.96443 0.89877 1.02305 1.20710 1.03336 0.95375 0.86880 1.20635 1.07043 0.93576 0.97860 1.17638 0.96735 0.96245 0.84488 1.21178 0.94958 1.41110 0.96435 0.92767 1.24992 0.97027 0.95596 0.96792 1.69967 1.33704 1.44183 1.05827 0.86618 0.85482 0.77768 0.78664 1.19846 1.21096 1.21114 1.23706 1.00526 0.98515 0.91610 1.77063 1.23132 1.00229 1.13097 1.48414 1.53368 1.09978 1.04531 1.21045 0.96576 0.98587 0.78058 1.22112 0.96259 1.03472 0.99758 1.22106 0.99020 1.00762 0.99716 0.92902 0.94089 0.89943 0.89094 0.92701 0.95944 0.95859 0.93138 0.80991 0.88834 0.91329 0.91463 0.92306 0.92195 0.91485 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.89 37.15 0.37 -2.06 16 2 C -0.05 -0.81 5.79 -27.89 -0.16 -0.97 16 3 C 0.06 1.21 6.18 -82.26 -0.51 0.71 16 4 C -0.18 -4.08 5.29 -105.06 -0.56 -4.63 16 5 C 0.09 2.25 5.19 -29.03 -0.15 2.10 16 6 C -0.50 -13.80 8.47 -34.44 -0.29 -14.09 16 7 H 0.05 1.52 7.58 -52.49 -0.40 1.12 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 10 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 C 0.04 0.87 11.96 -17.37 -0.21 0.66 16 15 N -0.31 -6.26 12.43 30.62 0.38 -5.88 16 16 N -0.38 -6.83 3.28 -50.69 -0.17 -7.00 16 17 C 0.16 2.17 3.64 -67.93 -0.25 1.92 16 18 C -0.16 -1.86 9.45 37.16 0.35 -1.51 16 19 C -0.16 -1.94 9.45 37.16 0.35 -1.59 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 1.65 7.34 -51.93 -0.38 1.27 16 23 H 0.09 1.66 7.25 -51.93 -0.38 1.28 16 24 H 0.05 0.77 7.10 -51.92 -0.37 0.40 16 25 H 0.02 0.60 7.31 -51.93 -0.38 0.22 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.17 3.26 8.06 -52.48 -0.42 2.84 16 29 H 0.09 1.13 6.67 -51.93 -0.35 0.78 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -30.78 293.53 -6.41 -37.19 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.61 Total: -1.57 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.15 Total: -17.97 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.95 Total: -38.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.78 -6.41 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.824 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds