Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47109 * 2 1 4 4 C 1.35306 * 126.12780 * 270.02646 * 3 2 1 5 5 C 1.50700 * 126.04114 * 359.97344 * 4 3 2 6 6 C 1.50702 * 109.46869 * 85.00125 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.39870 * 107.92180 * 180.24283 * 4 3 2 15 15 N 1.30834 * 108.20254 * 359.55136 * 14 4 3 16 16 N 1.34955 * 126.12407 * 89.99815 * 3 2 1 17 17 C 1.46499 * 126.03721 * 359.97438 * 16 3 2 18 18 C 1.53008 * 109.46562 * 120.00295 * 17 16 3 19 19 C 1.52997 * 109.47057 * 239.99910 * 17 16 3 20 20 H 1.09003 * 109.47361 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47496 * 299.99563 * 1 2 3 22 22 H 1.09000 * 109.47631 * 60.00274 * 1 2 3 23 23 H 1.09003 * 109.47349 * 239.99905 * 2 1 3 24 24 H 1.09007 * 109.46998 * 119.99725 * 2 1 3 25 25 H 1.09004 * 109.47210 * 325.00418 * 5 4 3 26 26 H 1.08994 * 109.47551 * 205.00070 * 5 4 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 28 28 H 1.08003 * 125.90136 * 179.74088 * 14 4 3 29 29 H 1.08997 * 109.47128 * 0.02562 * 17 16 3 30 30 H 1.08994 * 109.46986 * 59.99966 * 18 17 16 31 31 H 1.08999 * 109.46838 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46993 * 299.99398 * 18 17 16 33 33 H 1.08999 * 109.46998 * 60.00314 * 19 17 16 34 34 H 1.08999 * 109.46952 * 180.02562 * 19 17 16 35 35 H 1.09007 * 109.47365 * 300.00295 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2977 2.1731 -1.0929 5 6 2.1438 1.7381 -2.5275 6 6 0.7186 1.9533 -2.9675 7 1 -0.0034 2.3644 -2.2774 8 6 0.3378 1.6312 -4.2529 9 7 1.2171 1.1310 -5.0933 10 14 -1.4269 1.9051 -4.8006 11 1 -2.2116 2.4744 -3.6758 12 1 -1.4487 2.8493 -5.9466 13 1 -2.0234 0.6098 -5.2151 14 6 2.7461 3.4239 -0.6559 15 7 2.7406 3.4258 0.6525 16 7 2.2974 2.1710 1.0901 17 6 2.1473 1.7480 2.4846 18 6 3.5018 1.8313 3.1914 19 6 1.1464 2.6649 3.1907 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 2.3956 0.6812 -2.6157 26 1 2.8113 2.3246 -3.1587 27 1 0.9491 0.9040 -5.9976 28 1 3.0425 4.2471 -1.2891 29 1 1.7842 0.7208 2.5157 30 1 3.8653 2.8584 3.1602 31 1 3.3901 1.5171 4.2291 32 1 4.2148 1.1781 2.6884 33 1 0.1815 2.6056 2.6872 34 1 1.0351 2.3505 4.2284 35 1 1.5100 3.6921 3.1596 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260776775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = 31.902499 kcal Electronic energy + Delta-G solvation = -15482.799838 eV Core-core repulsion = 13094.955646 eV Total energy + Delta-G solvation = -2387.844191 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.13105 -36.69111 -35.43632 -34.57209 -32.05168 -30.47623 -28.22935 -28.15909 -25.04585 -24.11263 -23.66756 -20.42110 -19.92277 -18.35949 -17.60676 -16.50556 -16.01361 -15.50378 -15.29640 -14.92023 -14.40349 -14.15428 -14.05566 -13.69383 -13.40181 -13.16374 -13.08066 -12.94507 -12.77654 -12.55959 -12.28573 -12.25779 -12.07448 -11.73498 -11.69322 -11.41391 -11.13182 -10.50307 -9.97266 -8.94288 -8.08061 -6.19679 1.08268 1.40475 1.41999 1.54006 1.76127 2.07723 2.48410 3.20365 3.59780 3.83948 4.01574 4.06251 4.18116 4.24619 4.51674 4.66057 4.69142 4.72348 4.76439 4.83073 4.84489 4.99968 5.05476 5.13756 5.24686 5.27136 5.40413 5.48637 5.52670 5.83546 5.87875 5.94465 6.34051 6.43272 6.92008 6.95773 7.47217 8.99457 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.037695 B = 0.007765 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.635120 B = 3604.955149 C = 3794.809811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.072 3.928 4 C -0.224 4.224 5 C 0.102 3.898 6 C -0.504 4.504 7 H 0.047 0.953 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.954 3.046 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.027 3.973 15 N -0.318 5.318 16 N -0.366 5.366 17 C 0.143 3.857 18 C -0.152 4.152 19 C -0.152 4.152 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.001 0.999 26 H -0.006 1.006 27 H 0.262 0.738 28 H 0.180 0.820 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 -2.310 16.376 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.055 4.055 4 C -0.235 4.235 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.065 0.935 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.201 1.201 14 C -0.157 4.157 15 N -0.140 5.140 16 N -0.151 5.151 17 C 0.043 3.957 18 C -0.209 4.209 19 C -0.210 4.210 20 H 0.099 0.901 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.020 0.980 26 H 0.012 0.988 27 H 0.071 0.929 28 H 0.197 0.803 29 H 0.136 0.864 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.146 -1.716 17.432 17.517 hybrid contribution -0.771 -0.020 -1.808 1.965 sum -0.624 -1.736 15.624 15.733 Atomic orbital electron populations 1.21678 0.93831 1.02650 1.01651 1.20117 0.96880 0.88229 1.03422 1.21022 1.01431 0.96302 0.86712 1.20424 1.10782 0.95345 0.96950 1.17288 0.95314 0.94363 0.86616 1.21366 0.95635 1.40732 0.96552 0.93492 1.25797 1.01257 0.95270 0.96833 1.70085 1.35825 1.45178 1.06265 0.85567 0.80368 0.77976 0.78170 1.19327 1.20659 1.20120 1.23830 1.01105 0.98482 0.92260 1.77010 1.23293 1.01452 1.12279 1.48853 1.51341 1.08884 1.06030 1.21652 0.98318 1.00131 0.75616 1.22082 0.94690 1.02473 1.01680 1.22082 0.97612 0.99614 1.01705 0.90143 0.92493 0.94064 0.90938 0.88574 0.98030 0.98776 0.92879 0.80267 0.86373 0.92933 0.87632 0.92980 0.93438 0.87558 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.89 71.98 0.71 -3.67 16 2 C -0.05 -1.54 5.79 29.85 0.17 -1.37 16 3 C 0.07 2.82 6.18 41.40 0.26 3.07 16 4 C -0.22 -10.41 5.29 -20.15 -0.11 -10.52 16 5 C 0.10 5.56 5.19 29.10 0.15 5.71 16 6 C -0.50 -28.82 8.47 25.60 0.22 -28.61 16 7 H 0.05 2.70 7.58 -2.91 -0.02 2.68 16 8 C 0.01 0.33 5.46 84.66 0.46 0.79 16 9 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 10 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 C 0.03 1.18 11.96 85.24 1.02 2.20 16 15 N -0.32 -12.62 12.43 -57.02 -0.71 -13.33 16 16 N -0.37 -12.71 3.28 -314.29 -1.03 -13.74 16 17 C 0.14 3.41 3.64 44.99 0.16 3.57 16 18 C -0.15 -3.05 9.45 71.98 0.68 -2.37 16 19 C -0.15 -3.24 9.45 71.98 0.68 -2.56 16 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.63 7.34 -2.39 -0.02 1.61 16 23 H 0.07 2.64 7.25 -2.39 -0.02 2.63 16 24 H 0.10 2.33 7.10 -2.38 -0.02 2.31 16 25 H 0.00 0.08 7.31 -2.38 -0.02 0.07 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 28 H 0.18 7.11 8.06 -2.91 -0.02 7.08 16 29 H 0.12 2.27 6.67 -2.39 -0.02 2.26 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -68.33 293.53 6.03 -62.30 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.04 Total: 7.89 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.41 Total: -33.74 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.45 Total: -83.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.33 6.03 -62.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.203 kcal (2) G-P(sol) polarization free energy of solvation -68.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds