Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46905 * 109.47370 * 2 1 4 4 C 1.46901 * 111.00266 * 159.82827 * 3 2 1 5 5 C 1.53000 * 109.47542 * 288.50413 * 4 3 2 6 6 C 1.38002 * 110.99938 * 283.78823 * 3 2 1 7 7 C 1.38297 * 125.69649 * 0.02562 * 6 3 2 8 8 C 1.38913 * 107.90493 * 179.97438 * 7 6 3 9 9 C 1.39833 * 107.35072 * 0.02562 * 8 7 6 10 10 C 1.39789 * 126.15893 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99369 * 179.97438 * 10 9 8 12 12 C 1.39845 * 120.00537 * 359.97438 * 10 9 8 13 13 N 1.31043 * 120.00047 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99954 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47547 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47301 * 120.00084 * 14 12 10 17 17 H 1.48508 * 109.46858 * 239.99790 * 14 12 10 18 18 N 1.36620 * 125.69506 * 179.71257 * 6 3 2 19 19 C 1.46505 * 125.76610 * 0.02562 * 18 6 3 20 20 H 1.09005 * 109.47181 * 185.21287 * 1 2 3 21 21 H 1.09004 * 109.47476 * 305.21288 * 1 2 3 22 22 H 1.09003 * 109.46953 * 65.21329 * 1 2 3 23 23 H 1.09005 * 109.47626 * 240.00279 * 2 1 3 24 24 H 1.09002 * 109.47265 * 119.99950 * 2 1 3 25 25 H 1.09009 * 109.46690 * 48.50349 * 4 3 2 26 26 H 1.08995 * 109.47122 * 168.49722 * 4 3 2 27 27 H 1.09001 * 109.46990 * 61.45340 * 5 4 3 28 28 H 1.08993 * 109.47257 * 181.46051 * 5 4 3 29 29 H 1.09003 * 109.46651 * 301.46151 * 5 4 3 30 30 H 1.07997 * 126.04167 * 359.94916 * 7 6 3 31 31 H 1.08006 * 126.32079 * 179.97438 * 8 7 6 32 32 H 0.96994 * 120.00429 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46998 * 90.00175 * 19 18 6 34 34 H 1.08998 * 109.46928 * 209.99577 * 19 18 6 35 35 H 1.08998 * 109.47108 * 329.99965 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4088 1.4523 0.4729 5 6 3.4492 1.1786 1.9777 6 6 1.8950 1.9536 -1.2512 7 6 1.3817 1.3297 -2.3737 8 6 1.4281 2.2363 -3.4251 9 6 1.9777 3.4226 -2.9289 10 6 2.2033 4.5947 -3.6565 11 1 2.6350 5.4571 -3.1705 12 6 1.8699 4.6505 -5.0135 13 7 1.3466 3.6039 -5.6032 14 14 2.1721 6.2167 -5.9857 15 1 2.7677 7.2451 -5.0953 16 1 3.1041 5.9317 -7.1062 17 1 0.8841 6.7185 -6.5286 18 7 2.2526 3.2289 -1.5865 19 6 2.8329 4.2221 -0.6792 20 1 -0.3634 -1.0235 0.0934 21 1 -0.3634 0.5926 0.8396 22 1 -0.3633 0.4309 -0.9330 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.0067 0.7046 -0.0486 26 1 3.8130 2.4446 0.2731 27 1 3.0690 0.1763 2.1750 28 1 4.4768 1.2540 2.3333 29 1 2.8304 1.9105 2.4968 30 1 1.0108 0.3167 -2.4238 31 1 1.1011 2.0577 -4.4388 32 1 1.1150 3.6427 -6.5443 33 1 3.9197 4.1400 -0.6978 34 1 2.5386 5.2217 -0.9987 35 1 2.4723 4.0434 0.3337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260872337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = 50.907868 kcal Electronic energy + Delta-G solvation = -15652.821100 eV Core-core repulsion = 13265.801043 eV Total energy + Delta-G solvation = -2387.020057 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.61532 -36.58882 -33.28206 -32.21088 -30.51836 -29.24993 -27.40106 -25.04066 -23.65870 -22.68937 -20.90815 -19.17468 -17.94859 -16.76231 -15.86775 -14.88269 -14.72467 -14.36986 -13.85656 -13.40706 -13.30359 -12.36439 -12.23902 -12.20143 -11.91025 -11.36986 -11.33061 -11.29234 -11.21532 -11.04448 -10.93799 -10.51258 -10.39041 -10.18973 -10.10174 -9.44624 -9.22814 -8.28848 -6.94817 -6.37269 -6.27417 -3.91181 3.03653 3.16727 3.20869 3.68316 4.01935 4.28632 4.60826 4.95259 5.31046 5.52775 5.56014 5.59184 5.71540 5.78972 5.86811 5.97100 6.06060 6.08322 6.18146 6.25737 6.31373 6.45259 6.50603 6.71618 6.96857 7.03468 7.29123 7.53295 7.62218 7.99467 8.07636 8.49410 8.55078 9.02485 9.21928 9.33443 9.51714 10.51634 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.042906 B = 0.007919 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.426898 B = 3534.904603 C = 4017.015741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 N -0.459 5.459 4 C 0.037 3.963 5 C -0.144 4.144 6 C 0.075 3.925 7 C -0.202 4.202 8 C -0.274 4.274 9 C 0.207 3.793 10 C -0.447 4.447 11 H 0.066 0.934 12 C 0.069 3.931 13 N -0.806 5.806 14 Si 0.918 3.082 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.477 5.477 19 C 0.096 3.904 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.155 0.845 32 H 0.271 0.729 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -2.679 8.307 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 N -0.179 5.179 4 C -0.090 4.090 5 C -0.202 4.202 6 C -0.125 4.125 7 C -0.231 4.231 8 C -0.298 4.298 9 C 0.098 3.902 10 C -0.483 4.483 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.435 5.435 14 Si 0.744 3.256 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.164 5.164 19 C -0.047 4.047 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.172 0.828 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.856 -2.290 8.696 9.182 hybrid contribution 0.658 0.321 -0.863 1.132 sum 2.514 -1.969 7.833 8.459 Atomic orbital electron populations 1.21795 0.95046 1.00232 1.03371 1.21968 0.96308 0.87866 1.00153 1.58703 1.18080 1.17267 1.23840 1.22336 0.90164 1.01498 0.94957 1.21795 1.00735 1.01626 0.96018 1.18101 1.18155 0.86925 0.89272 1.20676 1.11446 0.98223 0.92723 1.21649 1.15449 0.93081 0.99572 1.18044 0.97748 0.95744 0.78644 1.18339 1.38738 0.97220 0.93992 0.91582 1.25548 0.93911 0.97451 0.97601 1.69852 1.33436 1.28636 1.11529 0.86111 0.78494 0.81525 0.79511 1.19066 1.20202 1.20169 1.43706 1.54404 1.09085 1.09199 1.21493 0.96898 0.92832 0.93488 0.93321 0.92673 0.91252 0.94031 0.91729 0.95240 0.90922 0.92969 0.92943 0.92263 0.87919 0.82793 0.91790 0.93882 0.91252 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.73 37.15 0.36 -2.00 16 2 C 0.06 1.10 5.11 -3.83 -0.02 1.08 16 3 N -0.46 -8.93 4.35 -172.54 -0.75 -9.68 16 4 C 0.04 0.63 5.33 -3.82 -0.02 0.61 16 5 C -0.14 -1.91 9.95 37.16 0.37 -1.54 16 6 C 0.07 1.76 6.14 -152.55 -0.94 0.82 16 7 C -0.20 -5.10 8.36 -39.31 -0.33 -5.43 16 8 C -0.27 -7.75 9.76 -38.74 -0.38 -8.13 16 9 C 0.21 5.77 6.68 -83.73 -0.56 5.21 16 10 C -0.45 -12.30 8.96 -38.40 -0.34 -12.64 16 11 H 0.07 1.72 7.13 -52.49 -0.37 1.35 16 12 C 0.07 1.82 5.49 -17.29 -0.09 1.73 16 13 N -0.81 -21.90 10.23 55.55 0.57 -21.33 16 14 Si 0.92 19.65 29.56 -169.99 -5.03 14.62 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 N -0.48 -11.75 3.20 -120.25 -0.38 -12.13 16 19 C 0.10 1.91 9.01 59.85 0.54 2.45 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.07 1.29 6.19 -51.93 -0.32 0.97 16 23 H 0.04 0.75 6.66 -51.93 -0.35 0.40 16 24 H 0.06 0.93 6.23 -51.93 -0.32 0.61 16 25 H 0.03 0.52 8.06 -51.92 -0.42 0.10 16 26 H 0.07 1.29 4.92 -51.93 -0.26 1.03 16 27 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 2.38 6.14 -52.49 -0.32 2.05 16 31 H 0.15 4.56 5.66 -52.48 -0.30 4.26 16 32 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 33 H 0.04 0.79 7.48 -51.93 -0.39 0.40 16 34 H 0.07 1.35 7.34 -51.93 -0.38 0.97 16 35 H 0.06 1.16 7.64 -51.93 -0.40 0.76 16 LS Contribution 274.04 15.07 4.13 4.13 Total: -1.00 -29.60 274.04 -7.86 -37.46 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.99 Total: 4.76 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.41 Total: -17.83 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.57 Total: -43.15 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.60 -7.86 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.368 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds