Wall clock time and date at job start Mon Mar 30 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48508 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47285 * 299.99728 * 3 2 1 6 6 H 1.48497 * 109.47510 * 60.00245 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 11 11 C 1.53006 * 109.47126 * 59.99803 * 9 7 2 12 12 C 1.52997 * 109.47127 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 9 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 16 16 C 1.53002 * 109.47092 * 300.00166 * 15 9 7 17 17 C 1.53008 * 109.46800 * 179.97438 * 16 15 9 18 18 C 1.52996 * 109.47219 * 300.00133 * 17 16 15 19 19 C 1.53002 * 109.47346 * 59.99802 * 18 17 16 20 20 C 1.52996 * 109.46975 * 60.00328 * 15 9 7 21 21 H 0.97000 * 120.00354 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46505 * 59.99690 * 11 9 7 23 23 H 1.08996 * 109.46884 * 300.00571 * 11 9 7 24 24 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 25 25 H 1.09001 * 109.46832 * 60.00321 * 12 11 9 26 26 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 27 27 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 28 28 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 29 29 H 1.09004 * 109.47108 * 179.97438 * 14 13 12 30 30 H 1.09002 * 109.47067 * 299.99853 * 16 15 9 31 31 H 1.09000 * 109.47312 * 59.99880 * 16 15 9 32 32 H 1.09001 * 109.46630 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.46943 * 60.00383 * 17 16 15 34 34 H 1.09000 * 109.46870 * 299.99985 * 18 17 16 35 35 H 1.08996 * 109.47261 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47070 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.46986 * 60.00254 * 19 18 17 38 38 H 1.09004 * 109.47368 * 299.99783 * 20 15 9 39 39 H 1.09001 * 109.47372 * 59.99628 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2495 12 6 -0.3936 -3.9052 -1.2498 13 6 0.6011 -5.0678 -1.2507 14 6 1.4812 -4.9870 -0.0018 15 6 2.2453 -3.6620 -0.0018 16 6 3.1240 -3.5804 -1.2517 17 6 4.1187 -4.7430 -1.2526 18 6 4.9992 -4.6619 -0.0040 19 6 4.1205 -4.7435 1.2459 20 6 3.1258 -3.5815 1.2468 21 1 -0.4850 0.8400 0.0004 22 1 0.9973 -2.5219 -2.1396 23 1 -0.3373 -1.7514 -1.2490 24 1 -1.0203 -3.9630 -2.1398 25 1 -1.0198 -3.9636 -0.3596 26 1 0.0564 -6.0119 -1.2514 27 1 1.2274 -5.0094 -2.1409 28 1 0.8550 -5.0454 0.8884 29 1 2.1895 -5.8155 -0.0022 30 1 2.4967 -3.6378 -2.1413 31 1 3.6690 -2.6364 -1.2517 32 1 4.7450 -4.6845 -2.1428 33 1 3.5740 -5.6872 -1.2525 34 1 5.5438 -3.7177 -0.0042 35 1 5.7081 -5.4898 -0.0049 36 1 4.7477 -4.6852 2.1354 37 1 3.5758 -5.6876 1.2461 38 1 3.6709 -2.6376 1.2469 39 1 2.4998 -3.6397 2.1372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:43 Heat of formation + Delta-G solvation = -44.874198 kcal Electronic energy + Delta-G solvation = -16786.429934 eV Core-core repulsion = 14498.796798 eV Total energy + Delta-G solvation = -2287.633135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60854 -35.24163 -32.82106 -30.59516 -29.92365 -29.24346 -25.49120 -24.20634 -22.08676 -21.56436 -20.40988 -19.00479 -17.25585 -16.16869 -15.11085 -14.41447 -14.08608 -13.69194 -13.36311 -13.12954 -12.73400 -12.37794 -12.28890 -11.92969 -11.48374 -11.13165 -10.97273 -10.95993 -10.65671 -10.48291 -10.34958 -10.17373 -9.96888 -9.93595 -9.85188 -9.78213 -9.29658 -8.86691 -8.48004 -8.34551 -8.15547 -5.89102 -3.93319 3.32994 3.41646 3.44729 4.50206 5.31189 5.33568 5.41898 5.43324 5.70008 5.77448 5.80404 5.96341 6.09742 6.14168 6.20768 6.24664 6.32027 6.39390 6.44040 6.47021 6.54641 6.60965 6.67290 6.71817 6.80713 6.88465 6.97396 7.01680 7.06360 7.24933 7.31682 7.40471 7.44628 7.66374 7.86395 8.13591 8.27433 8.58836 9.10024 9.70008 11.16315 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.012021 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.143650 B = 2328.694668 C = 2975.890916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.062 3.938 10 H 0.022 0.978 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.115 4.115 14 C -0.109 4.109 15 C -0.043 4.043 16 C -0.100 4.100 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.100 4.100 21 H 0.256 0.744 22 H 0.035 0.965 23 H 0.088 0.912 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -8.827 -0.991 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.044 3.956 10 H 0.040 0.960 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.043 4.043 16 C -0.138 4.138 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.137 4.137 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.529 -8.699 -0.988 9.857 hybrid contribution 0.393 0.967 0.000 1.044 sum 4.922 -7.732 -0.988 9.219 Atomic orbital electron populations 1.69895 1.05788 1.25889 1.51558 1.24956 0.94742 0.98774 0.95649 0.86688 0.80238 0.84572 0.77396 1.19910 1.21292 1.21292 1.21293 0.92857 0.90515 1.49138 0.92427 1.18633 0.91926 0.90989 0.94058 0.96011 1.21644 0.99453 0.94957 0.98881 1.21622 0.97464 0.97022 0.99555 1.21539 0.97823 0.97375 0.98509 1.21664 0.97705 0.97935 0.97281 1.20468 0.95210 0.95107 0.93469 1.21579 0.96601 0.97284 0.98303 1.21638 0.97848 0.99883 0.96596 1.21476 0.97492 1.00665 0.95533 1.21613 0.97848 0.99709 0.96687 1.21497 0.96803 0.97587 0.97846 0.93357 0.94614 0.89410 0.94405 0.93298 0.94203 0.92526 0.93213 0.93146 0.92272 0.91491 0.93469 0.92575 0.92407 0.93541 0.93401 0.92613 0.91222 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.50 -13.15 7.10 -34.44 -0.24 -13.40 16 8 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 9 C 0.06 1.49 1.42 -91.77 -0.13 1.36 16 10 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 11 C -0.11 -2.60 4.71 -26.73 -0.13 -2.72 16 12 C -0.12 -2.34 5.92 -26.73 -0.16 -2.50 16 13 C -0.12 -2.00 5.65 -26.73 -0.15 -2.15 16 14 C -0.11 -1.93 4.03 -26.76 -0.11 -2.03 16 15 C -0.04 -0.84 0.27 -154.53 -0.04 -0.88 16 16 C -0.10 -1.88 3.78 -26.73 -0.10 -1.99 16 17 C -0.12 -1.91 5.65 -26.73 -0.15 -2.06 16 18 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 19 C -0.12 -1.88 5.65 -26.76 -0.15 -2.04 16 20 C -0.10 -1.88 4.47 -26.76 -0.12 -2.00 16 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.04 0.83 6.43 -51.93 -0.33 0.49 16 23 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.97 6.43 -51.93 -0.33 0.63 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.81 4.81 -51.93 -0.25 0.56 16 30 H 0.06 1.14 4.80 -51.93 -0.25 0.89 16 31 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 38 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 272.09 15.07 4.10 4.10 Total: -1.00 -26.79 272.09 -8.53 -35.31 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.50 Total: -0.18 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -1.74 Total: -30.75 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.63 Total: -24.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.79 -8.53 -35.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.561 kcal (2) G-P(sol) polarization free energy of solvation -26.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds