Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48508 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47285 * 299.99728 * 3 2 1 6 6 H 1.48497 * 109.47510 * 60.00245 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 11 11 C 1.53006 * 109.47126 * 59.99803 * 9 7 2 12 12 C 1.52997 * 109.47127 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 9 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 16 16 C 1.53002 * 109.47092 * 300.00166 * 15 9 7 17 17 C 1.53008 * 109.46800 * 179.97438 * 16 15 9 18 18 C 1.52996 * 109.47219 * 300.00133 * 17 16 15 19 19 C 1.53002 * 109.47346 * 59.99802 * 18 17 16 20 20 C 1.52996 * 109.46975 * 60.00328 * 15 9 7 21 21 H 0.97000 * 120.00354 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46505 * 59.99690 * 11 9 7 23 23 H 1.08996 * 109.46884 * 300.00571 * 11 9 7 24 24 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 25 25 H 1.09001 * 109.46832 * 60.00321 * 12 11 9 26 26 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 27 27 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 28 28 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 29 29 H 1.09004 * 109.47108 * 179.97438 * 14 13 12 30 30 H 1.09002 * 109.47067 * 299.99853 * 16 15 9 31 31 H 1.09000 * 109.47312 * 59.99880 * 16 15 9 32 32 H 1.09001 * 109.46630 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.46943 * 60.00383 * 17 16 15 34 34 H 1.09000 * 109.46870 * 299.99985 * 18 17 16 35 35 H 1.08996 * 109.47261 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47070 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.46986 * 60.00254 * 19 18 17 38 38 H 1.09004 * 109.47368 * 299.99783 * 20 15 9 39 39 H 1.09001 * 109.47372 * 59.99628 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2495 12 6 -0.3936 -3.9052 -1.2498 13 6 0.6011 -5.0678 -1.2507 14 6 1.4812 -4.9870 -0.0018 15 6 2.2453 -3.6620 -0.0018 16 6 3.1240 -3.5804 -1.2517 17 6 4.1187 -4.7430 -1.2526 18 6 4.9992 -4.6619 -0.0040 19 6 4.1205 -4.7435 1.2459 20 6 3.1258 -3.5815 1.2468 21 1 -0.4850 0.8400 0.0004 22 1 0.9973 -2.5219 -2.1396 23 1 -0.3373 -1.7514 -1.2490 24 1 -1.0203 -3.9630 -2.1398 25 1 -1.0198 -3.9636 -0.3596 26 1 0.0564 -6.0119 -1.2514 27 1 1.2274 -5.0094 -2.1409 28 1 0.8550 -5.0454 0.8884 29 1 2.1895 -5.8155 -0.0022 30 1 2.4967 -3.6378 -2.1413 31 1 3.6690 -2.6364 -1.2517 32 1 4.7450 -4.6845 -2.1428 33 1 3.5740 -5.6872 -1.2525 34 1 5.5438 -3.7177 -0.0042 35 1 5.7081 -5.4898 -0.0049 36 1 4.7477 -4.6852 2.1354 37 1 3.5758 -5.6876 1.2461 38 1 3.6709 -2.6376 1.2469 39 1 2.4998 -3.6397 2.1372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = -57.385864 kcal Electronic energy + Delta-G solvation = -16786.972480 eV Core-core repulsion = 14498.796798 eV Total energy + Delta-G solvation = -2288.175682 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15535 -36.74715 -34.77660 -32.14883 -31.36897 -30.94569 -27.27023 -25.95541 -23.51787 -23.11903 -21.97309 -20.56835 -18.88874 -18.07091 -16.86310 -16.12064 -15.56680 -15.18086 -14.88913 -14.62453 -14.33218 -14.14251 -13.75492 -13.67252 -12.90626 -12.84991 -12.61329 -12.60059 -12.41959 -12.06908 -11.94594 -11.76449 -11.66254 -11.50877 -11.46378 -11.34673 -10.84253 -10.58061 -10.26423 -10.09951 -10.06029 -7.99982 -6.10203 1.37362 1.40366 1.50047 2.45954 3.26151 3.95831 3.99213 4.12178 4.27945 4.36782 4.40192 4.59948 4.64939 4.77157 4.84426 4.87513 4.89528 4.91689 4.99471 5.05154 5.09609 5.14807 5.27921 5.28780 5.35538 5.41042 5.50198 5.50981 5.54210 5.63268 5.67660 5.74018 5.75759 5.86720 5.91734 6.17567 6.34037 6.54678 7.02288 7.55760 9.03867 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.012021 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.143650 B = 2328.694668 C = 2975.890916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.007 3.993 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.061 3.939 10 H -0.020 1.020 11 C -0.106 4.106 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.041 4.041 16 C -0.096 4.096 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.100 4.100 21 H 0.255 0.745 22 H 0.031 0.969 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -11.070 -1.550 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.043 3.957 10 H -0.002 1.002 11 C -0.144 4.144 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.142 4.142 15 C -0.041 4.041 16 C -0.133 4.133 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.137 4.137 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.098 -10.946 -1.546 12.626 hybrid contribution -0.119 1.711 0.197 1.726 sum 5.979 -9.236 -1.349 11.085 Atomic orbital electron populations 1.70047 1.07038 1.26334 1.52821 1.25678 0.95491 1.01930 0.95897 0.85773 0.79342 0.80947 0.77218 1.19201 1.21085 1.21204 1.21616 0.92849 0.91841 1.47912 0.92795 1.18585 0.92397 0.92265 0.92443 1.00236 1.21460 0.98713 0.95967 0.98241 1.21550 0.97863 0.96078 0.99795 1.21510 0.97334 0.97311 0.98504 1.21640 0.98016 0.97266 0.97280 1.20381 0.94687 0.94505 0.94561 1.21480 0.96907 0.97734 0.97205 1.21596 0.97324 0.98611 0.97775 1.21490 0.97631 1.01417 0.94541 1.21560 0.97265 0.98320 0.97962 1.21445 0.97205 0.98193 0.96900 0.93609 0.95004 0.93293 0.92850 0.94383 0.91146 0.91692 0.94061 0.90223 0.92934 0.94339 0.91879 0.90952 0.93515 0.90453 0.91968 0.91066 0.93947 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 11.32 21.45 0.24 -54.42 16 2 C 0.01 0.40 5.30 84.66 0.45 0.85 16 3 Si 0.94 44.80 29.54 68.60 2.03 46.83 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.50 -27.53 7.10 25.60 0.18 -27.35 16 8 H 0.05 2.93 5.68 -2.91 -0.02 2.91 16 9 C 0.06 3.06 1.42 -11.54 -0.02 3.04 16 10 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 11 C -0.11 -5.08 4.71 30.60 0.14 -4.93 16 12 C -0.12 -4.48 5.92 30.59 0.18 -4.30 16 13 C -0.11 -3.48 5.65 30.59 0.17 -3.31 16 14 C -0.10 -3.48 4.03 30.58 0.12 -3.35 16 15 C -0.04 -1.61 0.27 -52.20 -0.01 -1.62 16 16 C -0.10 -3.49 3.78 30.60 0.12 -3.37 16 17 C -0.12 -3.19 5.65 30.60 0.17 -3.02 16 18 C -0.11 -2.97 5.92 30.59 0.18 -2.79 16 19 C -0.11 -3.20 5.65 30.58 0.17 -3.03 16 20 C -0.10 -3.74 4.47 30.58 0.14 -3.60 16 21 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 22 H 0.03 1.51 6.43 -2.39 -0.02 1.49 16 23 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.99 6.43 -2.39 -0.02 1.98 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 2.21 4.81 -2.38 -0.01 2.20 16 30 H 0.05 1.95 4.80 -2.39 -0.01 1.94 16 31 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.80 6.43 -2.39 -0.02 1.78 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.81 6.43 -2.39 -0.02 1.80 16 38 H 0.04 1.78 6.62 -2.39 -0.02 1.77 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -60.03 272.09 5.28 -54.75 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.01 Total: 9.64 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 2.00 Total: -56.79 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.24 Total: -54.42 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -60.03 5.28 -54.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.637 kcal (2) G-P(sol) polarization free energy of solvation -60.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds