Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48497 * 109.47390 * 270.00336 * 3 2 1 5 5 H 1.48506 * 109.47118 * 30.00437 * 3 2 1 6 6 H 1.48502 * 109.47123 * 149.99994 * 3 2 1 7 7 C 1.37874 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99490 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00394 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47240 * 179.97438 * 9 7 2 11 11 H 1.08998 * 115.54854 * 29.33009 * 10 9 7 12 12 C 1.53002 * 117.52019 * 243.63223 * 10 9 7 13 13 C 1.53001 * 117.49767 * 175.00208 * 10 9 7 14 14 H 1.08995 * 117.49772 * 0.02562 * 13 10 9 15 15 C 1.53000 * 117.49608 * 215.00109 * 13 10 9 16 16 C 1.52997 * 109.47060 * 175.00037 * 15 13 10 17 17 C 1.53001 * 109.47242 * 295.00551 * 16 15 13 18 18 C 1.52997 * 109.47242 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47380 * 59.99720 * 18 17 16 20 20 C 1.53002 * 109.46654 * 300.00174 * 19 18 17 21 21 C 1.52994 * 109.47404 * 175.00005 * 16 15 13 22 22 H 0.97001 * 120.00078 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46700 * 60.00181 * 9 7 2 24 24 H 1.08997 * 109.47362 * 300.00233 * 9 7 2 25 25 H 1.08998 * 117.50378 * 145.02423 * 12 10 9 26 26 H 1.09001 * 117.49479 * 0.02562 * 12 10 9 27 27 H 1.09002 * 109.47398 * 295.00206 * 15 13 10 28 28 H 1.09001 * 109.47194 * 55.00386 * 15 13 10 29 29 H 1.09008 * 109.47017 * 55.00082 * 16 15 13 30 30 H 1.09008 * 109.46731 * 299.99706 * 17 16 15 31 31 H 1.08998 * 109.47430 * 59.99652 * 17 16 15 32 32 H 1.08998 * 109.46934 * 299.99660 * 18 17 16 33 33 H 1.09000 * 109.47325 * 179.97438 * 18 17 16 34 34 H 1.08992 * 109.47003 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46692 * 59.99766 * 19 18 17 36 36 H 1.08995 * 109.46734 * 299.99283 * 20 19 18 37 37 H 1.09002 * 109.46264 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47476 * 300.00087 * 21 16 15 39 39 H 1.09008 * 109.46970 * 60.00049 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 1 3.3698 -3.3656 -0.4823 12 6 4.8259 -3.1018 1.2145 13 6 5.5317 -2.8518 -0.1198 14 1 6.1618 -1.9658 -0.1976 15 6 6.0113 -4.0742 -0.9051 16 6 7.5371 -4.0437 -1.0142 17 6 7.9648 -2.8339 -1.8474 18 6 9.4906 -2.8031 -1.9560 19 6 9.9800 -4.0860 -2.6311 20 6 9.5522 -5.2958 -1.7978 21 6 8.0259 -5.3266 -1.6895 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 4.7033 -4.1370 1.5329 26 1 4.9915 -2.3803 2.0146 27 1 5.7021 -4.9825 -0.3880 28 1 5.5753 -4.0583 -1.9039 29 1 7.9713 -3.9699 -0.0170 30 1 7.5306 -2.9077 -2.8445 31 1 7.6167 -1.9199 -1.3663 32 1 9.9244 -2.7291 -0.9588 33 1 9.7953 -1.9414 -2.5500 34 1 11.0669 -4.0642 -2.7080 35 1 9.5461 -4.1599 -3.6283 36 1 9.9861 -5.2217 -0.8006 37 1 9.9012 -6.2097 -2.2785 38 1 7.7212 -6.1885 -1.0959 39 1 7.5917 -5.4004 -2.6867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = -25.703079 kcal Electronic energy + Delta-G solvation = -15085.560847 eV Core-core repulsion = 12798.759033 eV Total energy + Delta-G solvation = -2286.801813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.99799 -37.02659 -32.97467 -32.05083 -30.79378 -28.96849 -26.19771 -22.81081 -22.79627 -21.70394 -19.99766 -19.59962 -19.30202 -16.64087 -15.51441 -14.93854 -14.36352 -14.29455 -14.00887 -13.68900 -13.42801 -12.75496 -12.49409 -12.37565 -12.20345 -11.79104 -11.66511 -11.20246 -11.16270 -11.00856 -10.86707 -10.67869 -10.45234 -10.27894 -10.04705 -9.94411 -9.77366 -9.25635 -9.09807 -8.73764 -8.45777 -6.00791 -3.97729 3.32766 3.39916 3.43818 4.45510 4.48015 4.64226 4.67667 4.73524 5.08815 5.16838 5.30729 5.33014 5.39430 5.46703 5.48533 5.58809 5.62885 5.68298 5.75023 5.78240 5.94566 5.98646 6.01669 6.10067 6.16016 6.22896 6.28008 6.29983 6.33570 6.47019 6.58411 6.69880 6.82538 6.92305 7.30854 7.45662 7.82974 8.59311 9.04638 9.61716 11.12868 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.044404 B = 0.005177 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.429568 B = 5407.693715 C = 5776.212376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.108 4.108 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.171 4.171 14 H 0.097 0.903 15 C -0.080 4.080 16 C -0.082 4.082 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.115 4.115 22 H 0.262 0.738 23 H 0.017 0.983 24 H 0.015 0.985 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.285 -8.303 -3.353 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.025 4.025 10 C -0.126 4.126 11 H 0.113 0.887 12 C -0.220 4.220 13 C -0.189 4.189 14 H 0.115 0.885 15 C -0.118 4.118 16 C -0.101 4.101 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.153 4.153 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.127 -8.186 -3.351 21.073 hybrid contribution 0.299 0.922 0.064 0.972 sum 19.426 -7.263 -3.287 20.999 Atomic orbital electron populations 1.69915 1.06269 1.26794 1.51482 1.25022 0.94730 0.99097 0.94731 0.86792 0.80338 0.83724 0.78496 1.20279 1.21397 1.19110 1.21145 0.89343 0.94423 1.50267 0.91009 1.19228 0.97042 0.90105 0.96119 1.22503 0.90494 1.00268 0.99309 0.88685 1.23077 1.06170 1.00998 0.91733 1.22494 0.97084 0.99284 1.00030 0.88465 1.21176 0.94142 0.96572 0.99866 1.21117 0.95604 0.94359 0.98989 1.21642 0.94860 0.98542 1.00348 1.21547 0.96425 0.97216 1.00559 1.21537 0.99929 0.95011 0.99200 1.21535 0.96270 0.97716 1.00106 1.21608 0.95149 0.97644 1.00863 0.92793 0.96520 0.96645 0.90053 0.89660 0.92316 0.91934 0.91386 0.92040 0.91481 0.92229 0.92338 0.92535 0.92139 0.92204 0.92444 0.92227 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -15.01 9.63 -34.44 -0.33 -15.34 16 8 H 0.07 2.25 7.92 -52.48 -0.42 1.83 16 9 C 0.01 0.30 4.32 -27.88 -0.12 0.18 16 10 C -0.11 -2.22 5.41 -90.62 -0.49 -2.71 16 11 H 0.09 2.02 8.00 -51.93 -0.42 1.60 16 12 C -0.18 -3.23 9.82 -26.73 -0.26 -3.49 16 13 C -0.17 -2.83 5.24 -90.62 -0.48 -3.31 16 14 H 0.10 1.61 6.38 -51.93 -0.33 1.28 16 15 C -0.08 -1.10 4.96 -26.73 -0.13 -1.24 16 16 C -0.08 -0.96 2.18 -90.62 -0.20 -1.15 16 17 C -0.12 -1.34 5.02 -26.73 -0.13 -1.48 16 18 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 19 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 20 C -0.12 -1.07 5.92 -26.70 -0.16 -1.22 16 21 C -0.12 -1.17 5.21 -26.71 -0.14 -1.30 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.02 0.41 6.93 -51.93 -0.36 0.05 16 24 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 25 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 26 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 27 H 0.06 0.78 7.88 -51.93 -0.41 0.38 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -30.11 302.26 -9.51 -39.61 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.31 Total: -2.20 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: -2.86 Total: -31.80 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.77 Total: -27.61 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.11 -9.51 -39.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds