Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48497 * 109.47390 * 270.00336 * 3 2 1 5 5 H 1.48506 * 109.47118 * 30.00437 * 3 2 1 6 6 H 1.48502 * 109.47123 * 149.99994 * 3 2 1 7 7 C 1.37874 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99490 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00394 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47240 * 179.97438 * 9 7 2 11 11 H 1.08998 * 115.54854 * 29.33009 * 10 9 7 12 12 C 1.53002 * 117.52019 * 243.63223 * 10 9 7 13 13 C 1.53001 * 117.49767 * 175.00208 * 10 9 7 14 14 H 1.08995 * 117.49772 * 0.02562 * 13 10 9 15 15 C 1.53000 * 117.49608 * 215.00109 * 13 10 9 16 16 C 1.52997 * 109.47060 * 175.00037 * 15 13 10 17 17 C 1.53001 * 109.47242 * 295.00551 * 16 15 13 18 18 C 1.52997 * 109.47242 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47380 * 59.99720 * 18 17 16 20 20 C 1.53002 * 109.46654 * 300.00174 * 19 18 17 21 21 C 1.52994 * 109.47404 * 175.00005 * 16 15 13 22 22 H 0.97001 * 120.00078 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46700 * 60.00181 * 9 7 2 24 24 H 1.08997 * 109.47362 * 300.00233 * 9 7 2 25 25 H 1.08998 * 117.50378 * 145.02423 * 12 10 9 26 26 H 1.09001 * 117.49479 * 0.02562 * 12 10 9 27 27 H 1.09002 * 109.47398 * 295.00206 * 15 13 10 28 28 H 1.09001 * 109.47194 * 55.00386 * 15 13 10 29 29 H 1.09008 * 109.47017 * 55.00082 * 16 15 13 30 30 H 1.09008 * 109.46731 * 299.99706 * 17 16 15 31 31 H 1.08998 * 109.47430 * 59.99652 * 17 16 15 32 32 H 1.08998 * 109.46934 * 299.99660 * 18 17 16 33 33 H 1.09000 * 109.47325 * 179.97438 * 18 17 16 34 34 H 1.08992 * 109.47003 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46692 * 59.99766 * 19 18 17 36 36 H 1.08995 * 109.46734 * 299.99283 * 20 19 18 37 37 H 1.09002 * 109.46264 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47476 * 300.00087 * 21 16 15 39 39 H 1.09008 * 109.46970 * 60.00049 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 1 3.3698 -3.3656 -0.4823 12 6 4.8259 -3.1018 1.2145 13 6 5.5317 -2.8518 -0.1198 14 1 6.1618 -1.9658 -0.1976 15 6 6.0113 -4.0742 -0.9051 16 6 7.5371 -4.0437 -1.0142 17 6 7.9648 -2.8339 -1.8474 18 6 9.4906 -2.8031 -1.9560 19 6 9.9800 -4.0860 -2.6311 20 6 9.5522 -5.2958 -1.7978 21 6 8.0259 -5.3266 -1.6895 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 4.7033 -4.1370 1.5329 26 1 4.9915 -2.3803 2.0146 27 1 5.7021 -4.9825 -0.3880 28 1 5.5753 -4.0583 -1.9039 29 1 7.9713 -3.9699 -0.0170 30 1 7.5306 -2.9077 -2.8445 31 1 7.6167 -1.9199 -1.3663 32 1 9.9244 -2.7291 -0.9588 33 1 9.7953 -1.9414 -2.5500 34 1 11.0669 -4.0642 -2.7080 35 1 9.5461 -4.1599 -3.6283 36 1 9.9861 -5.2217 -0.8006 37 1 9.9012 -6.2097 -2.2785 38 1 7.7212 -6.1885 -1.0959 39 1 7.5917 -5.4004 -2.6867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = -40.401608 kcal Electronic energy + Delta-G solvation = -15086.198223 eV Core-core repulsion = 12798.759033 eV Total energy + Delta-G solvation = -2287.439189 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99536 -38.34942 -34.98867 -33.30219 -31.57823 -30.87009 -27.33046 -24.82576 -23.63945 -22.67016 -21.27879 -20.90399 -20.45706 -18.85145 -16.64614 -16.28473 -15.79613 -15.40744 -15.09295 -14.88380 -14.71030 -14.34647 -14.10762 -13.76873 -13.19901 -13.06821 -12.91589 -12.59977 -12.50476 -12.13022 -12.11740 -11.94160 -11.75736 -11.72533 -11.46069 -11.27839 -10.99671 -10.82082 -10.77909 -10.55028 -10.21781 -8.30260 -6.33858 1.34109 1.36035 1.48198 2.35086 2.96946 3.10167 3.66720 3.86306 3.92135 4.08471 4.17766 4.21859 4.33180 4.41810 4.54623 4.64715 4.68793 4.70895 4.73522 4.77752 4.86687 4.99923 5.00838 5.08967 5.15580 5.17797 5.22727 5.32023 5.36738 5.37974 5.40176 5.46088 5.48301 5.55740 5.62353 5.68393 5.69124 6.29041 6.72997 7.29907 8.86905 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.044404 B = 0.005177 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.429568 B = 5407.693715 C = 5776.212376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.029 0.971 9 C 0.019 3.981 10 C -0.146 4.146 11 H 0.078 0.922 12 C -0.173 4.173 13 C -0.139 4.139 14 H 0.102 0.898 15 C -0.078 4.078 16 C -0.076 4.076 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.114 4.114 22 H 0.267 0.733 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.172 -8.095 -3.349 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.566 4.566 8 H 0.047 0.953 9 C -0.018 4.018 10 C -0.165 4.165 11 H 0.096 0.904 12 C -0.210 4.210 13 C -0.157 4.157 14 H 0.120 0.880 15 C -0.116 4.116 16 C -0.095 4.095 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.151 4.151 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.029 -7.997 -3.349 23.674 hybrid contribution -0.680 0.775 0.057 1.033 sum 21.349 -7.221 -3.291 22.777 Atomic orbital electron populations 1.70071 1.08302 1.28182 1.52803 1.26034 0.95654 1.03555 0.94125 0.85628 0.79396 0.78133 0.79292 1.19007 1.20707 1.17221 1.21477 0.91985 0.93007 1.50152 0.95286 1.19091 0.93798 0.92906 0.96011 1.22248 0.93206 0.97801 1.03199 0.90358 1.23170 1.04380 1.01939 0.91508 1.22555 0.93668 1.00481 0.99032 0.87958 1.21197 0.95850 0.95410 0.99106 1.21057 0.93711 0.95355 0.99342 1.21646 0.96236 0.97882 0.99824 1.21531 0.95011 0.98036 1.00972 1.21543 1.00715 0.94416 0.98948 1.21530 0.95180 0.98276 1.00444 1.21588 0.96139 0.96810 1.00579 0.92454 0.96331 0.96430 0.88278 0.89513 0.91674 0.92427 0.91224 0.92601 0.92684 0.91962 0.91922 0.91270 0.92306 0.91911 0.91280 0.91751 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 45.44 27.47 68.60 1.88 47.33 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.53 -31.84 9.63 25.60 0.25 -31.59 16 8 H 0.03 1.92 7.92 -2.91 -0.02 1.90 16 9 C 0.02 0.94 4.32 29.85 0.13 1.07 16 10 C -0.15 -6.05 5.41 -10.79 -0.06 -6.11 16 11 H 0.08 3.46 8.00 -2.39 -0.02 3.44 16 12 C -0.17 -5.85 9.82 30.60 0.30 -5.55 16 13 C -0.14 -4.40 5.24 -10.79 -0.06 -4.46 16 14 H 0.10 3.17 6.38 -2.39 -0.02 3.15 16 15 C -0.08 -2.02 4.96 30.59 0.15 -1.87 16 16 C -0.08 -1.60 2.18 -10.80 -0.02 -1.63 16 17 C -0.12 -2.51 5.02 30.59 0.15 -2.36 16 18 C -0.12 -2.05 5.92 30.60 0.18 -1.87 16 19 C -0.12 -1.80 5.92 30.60 0.18 -1.62 16 20 C -0.12 -1.76 5.92 30.61 0.18 -1.58 16 21 C -0.11 -2.02 5.21 30.61 0.16 -1.86 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.02 0.90 6.93 -2.39 -0.02 0.88 16 24 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 25 H 0.10 2.98 8.03 -2.39 -0.02 2.96 16 26 H 0.09 2.92 8.03 -2.39 -0.02 2.90 16 27 H 0.06 1.61 7.88 -2.39 -0.02 1.59 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.05 1.29 6.41 -2.39 -0.02 1.27 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -65.74 302.26 5.11 -60.63 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.92 Total: 11.87 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 2.01 Total: -58.80 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.30 Total: -61.03 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Total: -65.74 5.11 -60.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.229 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds