Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99897 * 2 1 4 4 H 1.48497 * 109.47109 * 239.99744 * 3 2 1 5 5 H 1.48501 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47162 * 120.00002 * 3 2 1 7 7 C 1.37876 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47252 * 179.97438 * 9 7 2 11 11 H 1.09006 * 115.56279 * 330.68797 * 10 9 7 12 12 C 1.53005 * 117.49868 * 116.37248 * 10 9 7 13 13 C 1.52999 * 117.50035 * 184.99633 * 10 9 7 14 14 H 1.08999 * 117.51457 * 359.97438 * 13 10 9 15 15 C 1.53003 * 117.49618 * 145.02084 * 13 10 9 16 16 C 1.53002 * 109.47063 * 185.01439 * 15 13 10 17 17 C 1.52997 * 109.47143 * 185.00181 * 16 15 13 18 18 C 1.53002 * 109.46817 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 20 20 C 1.52997 * 109.47060 * 299.99657 * 19 18 17 21 21 C 1.52999 * 109.47317 * 59.99960 * 20 19 18 22 22 H 0.97001 * 120.00698 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47184 * 59.99819 * 9 7 2 24 24 H 1.08998 * 109.47163 * 299.99689 * 9 7 2 25 25 H 1.08994 * 117.49763 * 0.02562 * 12 10 9 26 26 H 1.08997 * 117.50006 * 214.98171 * 12 10 9 27 27 H 1.09000 * 109.46927 * 65.01532 * 15 13 10 28 28 H 1.09000 * 109.47306 * 305.01474 * 15 13 10 29 29 H 1.09002 * 109.47067 * 305.00198 * 16 15 13 30 30 H 1.08993 * 109.47194 * 59.99677 * 17 16 15 31 31 H 1.09002 * 109.46695 * 299.99691 * 17 16 15 32 32 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 33 33 H 1.09004 * 109.46733 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47398 * 59.99826 * 19 18 17 35 35 H 1.09001 * 109.47194 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47153 * 300.00319 * 20 19 18 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 3.2026 -3.4624 -0.4809 12 6 2.2461 -4.5908 1.2165 13 6 1.6768 -5.0776 -0.1177 14 1 0.5944 -5.1807 -0.1950 15 6 2.4956 -6.1044 -0.9026 16 6 1.7062 -7.4106 -1.0115 17 6 2.5729 -8.4755 -1.6864 18 6 1.7832 -9.7814 -1.7959 19 6 0.5222 -9.5465 -2.6298 20 6 -0.3445 -8.4816 -1.9549 21 6 0.4450 -7.1757 -1.8453 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 1.5381 -4.3735 2.0162 26 1 3.2039 -5.0021 1.5350 27 1 3.4367 -6.2907 -0.3853 28 1 2.7001 -5.7192 -1.9015 29 1 1.4250 -7.7494 -0.0144 30 1 3.4715 -8.6425 -1.0927 31 1 2.8540 -8.1367 -2.6836 32 1 1.5017 -10.1204 -0.7990 33 1 2.4006 -10.5400 -2.2772 34 1 0.8037 -9.2076 -3.6268 35 1 -0.0406 -10.4768 -2.7074 36 1 -1.2432 -8.3145 -2.5486 37 1 -0.6261 -8.8206 -0.9579 38 1 -0.1723 -6.4171 -1.3641 39 1 0.7266 -6.8367 -2.8423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -29.374073 kcal Electronic energy + Delta-G solvation = -15030.468212 eV Core-core repulsion = 12743.507212 eV Total energy + Delta-G solvation = -2286.961000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.92353 -36.89457 -32.99649 -31.98800 -30.73418 -28.33475 -26.05854 -23.11921 -22.73228 -21.63650 -19.98194 -19.51716 -19.19179 -16.24881 -15.45598 -14.81332 -14.42838 -14.24076 -14.11427 -13.60820 -13.27627 -12.62830 -12.32699 -12.16943 -12.08505 -11.58353 -11.51757 -11.10186 -11.08840 -10.89733 -10.76299 -10.67376 -10.46167 -10.37993 -10.04392 -9.86253 -9.73247 -9.25383 -8.96860 -8.61502 -8.22707 -5.95799 -3.97368 3.36186 3.40131 3.42934 4.47076 4.58821 4.71210 4.74049 4.79699 5.16163 5.23448 5.38106 5.39837 5.46403 5.52787 5.54688 5.65396 5.71462 5.77573 5.86457 5.88339 6.00117 6.05258 6.08739 6.15761 6.23145 6.29976 6.36116 6.38440 6.42306 6.56167 6.65387 6.85514 6.95660 7.18955 7.73402 7.84260 8.03771 8.48327 9.08190 9.65755 11.15507 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.053987 B = 0.004644 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.514999 B = 6027.861274 C = 6248.496056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.115 4.115 11 H 0.088 0.912 12 C -0.185 4.185 13 C -0.170 4.170 14 H 0.098 0.902 15 C -0.079 4.079 16 C -0.082 4.082 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.116 4.116 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.018 0.982 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -17.775 -3.370 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.010 3.990 10 C -0.133 4.133 11 H 0.107 0.893 12 C -0.222 4.222 13 C -0.188 4.188 14 H 0.116 0.884 15 C -0.117 4.117 16 C -0.100 4.100 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.154 4.154 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.108 -17.654 -3.371 18.096 hybrid contribution 0.440 0.966 0.081 1.064 sum 2.547 -16.688 -3.290 17.199 Atomic orbital electron populations 1.69949 1.06043 1.26649 1.51062 1.25016 0.94841 0.99191 0.95472 0.86658 0.79573 0.83174 0.78595 1.20266 1.21317 1.20272 1.21217 0.92977 0.90896 1.50213 0.92731 1.18755 0.92920 0.90170 0.97121 1.22771 1.01180 0.90559 0.98772 0.89347 1.23067 1.01266 1.06038 0.91875 1.22465 0.99079 0.97381 0.99879 0.88393 1.21171 0.97332 0.93390 0.99786 1.21115 0.95169 0.94777 0.98973 1.21601 0.97989 0.94853 1.00823 1.21526 0.96609 0.97374 1.00099 1.21536 0.96385 0.98554 0.99181 1.21546 0.98022 0.95627 1.00561 1.21640 0.96491 0.96928 1.00318 0.92993 0.96156 0.96414 0.89679 0.90428 0.92521 0.92074 0.91407 0.92300 0.92125 0.92205 0.92502 0.92166 0.92564 0.92305 0.92232 0.91309 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.28 55.43 0.74 -26.65 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.90 9.08 -34.44 -0.31 -15.22 16 8 H 0.05 1.53 7.68 -52.48 -0.40 1.13 16 9 C 0.05 1.25 5.25 -27.88 -0.15 1.11 16 10 C -0.11 -2.47 5.41 -90.62 -0.49 -2.96 16 11 H 0.09 1.91 8.00 -51.93 -0.42 1.49 16 12 C -0.19 -3.44 9.82 -26.73 -0.26 -3.70 16 13 C -0.17 -3.00 5.24 -90.62 -0.48 -3.47 16 14 H 0.10 1.77 6.38 -51.93 -0.33 1.44 16 15 C -0.08 -1.15 4.96 -26.73 -0.13 -1.28 16 16 C -0.08 -1.01 2.19 -90.62 -0.20 -1.21 16 17 C -0.12 -1.22 5.20 -26.73 -0.14 -1.36 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 19 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 20 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 21 C -0.12 -1.43 5.02 -26.73 -0.13 -1.57 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.02 0.50 7.88 -51.93 -0.41 0.09 16 25 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 26 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 27 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.94 6.40 -51.93 -0.33 0.61 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -29.55 305.85 -9.88 -39.44 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.34 Total: -2.24 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -2.86 Total: -32.12 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.74 Total: -26.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.55 -9.88 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.063 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds