Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99897 * 2 1 4 4 H 1.48497 * 109.47109 * 239.99744 * 3 2 1 5 5 H 1.48501 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47162 * 120.00002 * 3 2 1 7 7 C 1.37876 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47252 * 179.97438 * 9 7 2 11 11 H 1.09006 * 115.56279 * 330.68797 * 10 9 7 12 12 C 1.53005 * 117.49868 * 116.37248 * 10 9 7 13 13 C 1.52999 * 117.50035 * 184.99633 * 10 9 7 14 14 H 1.08999 * 117.51457 * 359.97438 * 13 10 9 15 15 C 1.53003 * 117.49618 * 145.02084 * 13 10 9 16 16 C 1.53002 * 109.47063 * 185.01439 * 15 13 10 17 17 C 1.52997 * 109.47143 * 185.00181 * 16 15 13 18 18 C 1.53002 * 109.46817 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 20 20 C 1.52997 * 109.47060 * 299.99657 * 19 18 17 21 21 C 1.52999 * 109.47317 * 59.99960 * 20 19 18 22 22 H 0.97001 * 120.00698 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47184 * 59.99819 * 9 7 2 24 24 H 1.08998 * 109.47163 * 299.99689 * 9 7 2 25 25 H 1.08994 * 117.49763 * 0.02562 * 12 10 9 26 26 H 1.08997 * 117.50006 * 214.98171 * 12 10 9 27 27 H 1.09000 * 109.46927 * 65.01532 * 15 13 10 28 28 H 1.09000 * 109.47306 * 305.01474 * 15 13 10 29 29 H 1.09002 * 109.47067 * 305.00198 * 16 15 13 30 30 H 1.08993 * 109.47194 * 59.99677 * 17 16 15 31 31 H 1.09002 * 109.46695 * 299.99691 * 17 16 15 32 32 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 33 33 H 1.09004 * 109.46733 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47398 * 59.99826 * 19 18 17 35 35 H 1.09001 * 109.47194 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47153 * 300.00319 * 20 19 18 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 3.2026 -3.4624 -0.4809 12 6 2.2461 -4.5908 1.2165 13 6 1.6768 -5.0776 -0.1177 14 1 0.5944 -5.1807 -0.1950 15 6 2.4956 -6.1044 -0.9026 16 6 1.7062 -7.4106 -1.0115 17 6 2.5729 -8.4755 -1.6864 18 6 1.7832 -9.7814 -1.7959 19 6 0.5222 -9.5465 -2.6298 20 6 -0.3445 -8.4816 -1.9549 21 6 0.4450 -7.1757 -1.8453 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 1.5381 -4.3735 2.0162 26 1 3.2039 -5.0021 1.5350 27 1 3.4367 -6.2907 -0.3853 28 1 2.7001 -5.7192 -1.9015 29 1 1.4250 -7.7494 -0.0144 30 1 3.4715 -8.6425 -1.0927 31 1 2.8540 -8.1367 -2.6836 32 1 1.5017 -10.1204 -0.7990 33 1 2.4006 -10.5400 -2.2772 34 1 0.8037 -9.2076 -3.6268 35 1 -0.0406 -10.4768 -2.7074 36 1 -1.2432 -8.3145 -2.5486 37 1 -0.6261 -8.8206 -0.9579 38 1 -0.1723 -6.4171 -1.3641 39 1 0.7266 -6.8367 -2.8423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -42.932350 kcal Electronic energy + Delta-G solvation = -15031.056143 eV Core-core repulsion = 12743.507212 eV Total energy + Delta-G solvation = -2287.548931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98683 -38.31576 -35.04099 -33.22859 -31.58225 -30.30418 -27.30098 -25.20911 -23.64483 -22.68272 -21.32999 -20.84076 -20.45927 -18.46343 -16.71804 -16.28153 -15.89410 -15.39817 -15.02278 -14.78961 -14.58544 -14.27033 -13.91217 -13.71341 -13.12009 -13.02372 -12.89168 -12.64661 -12.52156 -12.39264 -12.08270 -11.94714 -11.83999 -11.58659 -11.45050 -11.27581 -10.98998 -10.78585 -10.72971 -10.45976 -10.15805 -8.20117 -6.31401 1.39039 1.42788 1.50732 2.40533 3.02236 3.15501 3.68600 3.85924 3.92115 4.10662 4.20784 4.23631 4.33827 4.42205 4.55326 4.64477 4.69252 4.70555 4.73930 4.82635 4.86872 5.00422 5.04732 5.11121 5.17177 5.22691 5.30245 5.31370 5.37348 5.39715 5.46352 5.49674 5.53058 5.59029 5.67658 5.68578 5.82888 6.25864 6.83501 7.37340 8.91531 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.053987 B = 0.004644 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.514999 B = 6027.861274 C = 6248.496056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.054 3.946 10 C -0.146 4.146 11 H 0.089 0.911 12 C -0.171 4.171 13 C -0.145 4.145 14 H 0.089 0.911 15 C -0.074 4.074 16 C -0.077 4.077 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.118 4.118 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -18.940 -3.452 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.017 3.983 10 C -0.164 4.164 11 H 0.107 0.893 12 C -0.208 4.208 13 C -0.164 4.164 14 H 0.107 0.893 15 C -0.112 4.112 16 C -0.095 4.095 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.156 4.156 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.612 -18.835 -3.453 19.487 hybrid contribution -0.083 1.325 0.109 1.332 sum 3.528 -17.511 -3.345 18.173 Atomic orbital electron populations 1.70092 1.07871 1.27868 1.51736 1.26008 0.95788 1.03425 0.94693 0.85472 0.78263 0.77917 0.79225 1.19101 1.20693 1.19135 1.21644 0.93455 0.92168 1.50433 0.92263 1.18550 0.93266 0.92216 0.94225 1.22450 1.00361 0.90883 1.02688 0.89299 1.23124 1.02440 1.03982 0.91255 1.22511 0.99111 0.95303 0.99431 0.89306 1.21175 0.97587 0.93380 0.99031 1.21060 0.95053 0.94180 0.99206 1.21574 0.98040 0.94737 1.00630 1.21524 0.96518 0.96958 1.00413 1.21537 0.96405 0.98617 0.98959 1.21532 0.98128 0.94976 1.00955 1.21636 0.96658 0.97519 0.99784 0.92745 0.99284 0.99215 0.90520 0.87604 0.91178 0.92410 0.91432 0.91453 0.92199 0.91954 0.91025 0.92222 0.91175 0.92073 0.92069 0.93408 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.50 13.28 21.45 0.28 -58.22 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.54 -31.93 9.08 25.60 0.23 -31.70 16 8 H 0.06 3.36 7.68 -2.91 -0.02 3.34 16 9 C 0.05 3.03 5.25 29.85 0.16 3.19 16 10 C -0.15 -6.38 5.41 -10.79 -0.06 -6.43 16 11 H 0.09 3.86 8.00 -2.38 -0.02 3.84 16 12 C -0.17 -6.22 9.82 30.60 0.30 -5.92 16 13 C -0.15 -5.11 5.24 -10.79 -0.06 -5.17 16 14 H 0.09 3.29 6.38 -2.39 -0.02 3.28 16 15 C -0.07 -2.05 4.96 30.60 0.15 -1.90 16 16 C -0.08 -1.76 2.19 -10.79 -0.02 -1.79 16 17 C -0.11 -2.10 5.20 30.59 0.16 -1.94 16 18 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 19 C -0.12 -1.95 5.92 30.59 0.18 -1.77 16 20 C -0.12 -2.34 5.92 30.59 0.18 -2.16 16 21 C -0.12 -2.86 5.02 30.60 0.15 -2.71 16 22 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H -0.01 -0.63 7.88 -2.39 -0.02 -0.65 16 25 H 0.08 2.91 8.03 -2.39 -0.02 2.89 16 26 H 0.11 3.26 8.03 -2.39 -0.02 3.24 16 27 H 0.07 1.77 7.88 -2.39 -0.02 1.75 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.33 6.40 -2.39 -0.02 1.32 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.42 305.85 5.30 -59.12 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.97 Total: 11.44 kcal Atomic # 6 Polarization: -61.65 SS G_CDS: 2.02 Total: -59.63 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.28 Total: -58.22 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.42 5.30 -59.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.187 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds