Wall clock time and date at job start Mon Mar 30 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99786 * 2 1 4 4 H 1.48502 * 109.46901 * 264.66342 * 3 2 1 5 5 H 1.48495 * 109.47455 * 24.66620 * 3 2 1 6 6 H 1.48505 * 109.46933 * 144.66859 * 3 2 1 7 7 C 1.37873 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 0.84191 * 7 2 1 9 9 C 1.50700 * 120.00111 * 180.84897 * 7 2 1 10 10 H 1.08999 * 110.01685 * 331.24721 * 9 7 2 11 11 C 1.53877 * 110.07172 * 92.65771 * 9 7 2 12 12 C 1.54474 * 106.68219 * 119.46921 * 11 9 7 13 13 C 1.54893 * 104.09890 * 23.34054 * 12 11 9 14 14 C 1.54266 * 110.03458 * 209.85236 * 9 7 2 15 15 H 1.09004 * 110.59567 * 335.78784 * 14 9 7 16 16 C 1.53001 * 110.48491 * 98.37491 * 14 9 7 17 17 C 1.52999 * 109.46973 * 181.22802 * 16 14 9 18 18 C 1.54263 * 110.03615 * 292.91073 * 17 16 14 19 19 C 1.54964 * 104.16192 * 217.13705 * 18 17 16 20 20 C 1.54889 * 102.77568 * 37.88370 * 19 18 17 21 21 C 1.53872 * 110.03396 * 175.69021 * 17 16 14 22 22 H 0.96998 * 120.00053 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.03274 * 238.58927 * 11 9 7 24 24 H 1.08992 * 110.03425 * 359.97438 * 11 9 7 25 25 H 1.09001 * 110.40052 * 264.76073 * 12 11 9 26 26 H 1.08999 * 110.66135 * 142.05201 * 12 11 9 27 27 H 1.09003 * 110.75216 * 203.89597 * 13 12 11 28 28 H 1.08997 * 110.75534 * 80.70747 * 13 12 11 29 29 H 1.08997 * 109.47188 * 301.23337 * 16 14 9 30 30 H 1.08998 * 109.46772 * 61.23091 * 16 14 9 31 31 H 1.09008 * 110.01327 * 54.30234 * 17 16 14 32 32 H 1.08998 * 110.48459 * 335.78644 * 18 17 16 33 33 H 1.09000 * 110.48563 * 98.42125 * 18 17 16 34 34 H 1.08998 * 110.71853 * 279.57455 * 19 18 17 35 35 H 1.08997 * 110.92429 * 156.29417 * 19 18 17 36 36 H 1.09004 * 110.48579 * 203.40627 * 20 19 18 37 37 H 1.09004 * 110.48442 * 80.76269 * 20 19 18 38 38 H 1.09006 * 110.03455 * 238.57432 * 21 17 16 39 39 H 1.09001 * 110.03289 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9813 -1.3940 5 1 1.3948 2.6826 0.5843 6 1 3.4858 1.4753 0.8097 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0128 9 6 3.5114 -1.1941 0.0199 10 1 3.8908 -0.2929 -0.4617 11 6 4.0209 -1.2712 1.4698 12 6 4.8555 -2.5666 1.5782 13 6 5.2946 -2.8557 0.1213 14 6 4.0491 -2.4461 -0.7034 15 1 3.3060 -3.2435 -0.6936 16 6 4.4472 -2.1045 -2.1407 17 6 4.9477 -3.3672 -2.8450 18 6 6.2734 -3.8360 -2.2106 19 6 7.1037 -4.3588 -3.4100 20 6 6.7496 -3.3550 -4.5352 21 6 5.2501 -3.0619 -4.3226 22 1 -0.4850 0.8400 -0.0004 23 1 4.6476 -0.4075 1.6918 24 1 3.1784 -1.3082 2.1602 25 1 4.2424 -3.3826 1.9609 26 1 5.7261 -2.4110 2.2154 27 1 5.5154 -3.9147 -0.0127 28 1 6.1558 -2.2455 -0.1509 29 1 3.5819 -1.7101 -2.6734 30 1 5.2395 -1.3561 -2.1301 31 1 4.1993 -4.1564 -2.7724 32 1 6.7824 -3.0008 -1.7296 33 1 6.0911 -4.6367 -1.4938 34 1 6.7953 -5.3683 -3.6818 35 1 8.1703 -4.3291 -3.1875 36 1 6.9152 -3.8052 -5.5141 37 1 7.3354 -2.4418 -4.4301 38 1 4.6491 -3.7035 -4.9670 39 1 5.0406 -2.0141 -4.5378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:47 Heat of formation + Delta-G solvation = -44.421518 kcal Electronic energy + Delta-G solvation = -15926.014144 eV Core-core repulsion = 13638.400639 eV Total energy + Delta-G solvation = -2287.613506 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.87471 -36.79521 -32.42350 -31.49248 -29.14359 -28.39249 -26.96778 -24.44066 -22.68325 -20.67389 -19.50662 -19.21898 -18.42894 -16.77266 -15.76551 -15.02314 -14.38935 -14.15679 -13.55792 -13.31771 -13.15344 -12.56491 -12.39105 -12.19863 -11.58849 -11.33816 -11.05942 -10.96989 -10.88073 -10.61441 -10.48283 -10.41283 -10.09472 -9.95650 -9.86252 -9.73739 -9.56253 -9.54555 -9.09994 -8.81216 -8.45161 -6.00243 -3.96763 3.32666 3.40876 3.44607 4.48889 4.79168 4.85151 4.93002 5.27841 5.42808 5.55452 5.60388 5.62900 5.71922 5.78161 5.83141 5.87621 5.92368 6.01099 6.10400 6.21937 6.28137 6.33406 6.34904 6.40841 6.47196 6.55631 6.62711 6.63200 6.67989 6.86171 6.91751 7.00392 7.12706 7.21453 7.44363 7.58281 7.91135 8.63891 9.05607 9.64235 11.13513 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.008239 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.774578 B = 3397.457803 C = 3837.389383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.016 3.984 10 H 0.028 0.972 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.124 4.124 14 C -0.076 4.076 15 H 0.068 0.932 16 C -0.100 4.100 17 C -0.090 4.090 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.123 4.123 22 H 0.261 0.739 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.284 -6.126 -5.049 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.539 4.539 8 H 0.089 0.911 9 C -0.003 4.003 10 H 0.046 0.954 11 C -0.162 4.162 12 C -0.161 4.161 13 C -0.161 4.161 14 C -0.094 4.094 15 H 0.086 0.914 16 C -0.137 4.137 17 C -0.109 4.109 18 C -0.158 4.158 19 C -0.166 4.166 20 C -0.161 4.161 21 C -0.160 4.160 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.105 -5.993 -5.047 15.269 hybrid contribution 0.278 1.014 0.023 1.052 sum 13.383 -4.979 -5.024 15.137 Atomic orbital electron populations 1.69910 1.06279 1.26726 1.51579 1.25061 0.94642 0.98894 0.94752 0.86897 0.80298 0.83896 0.78641 1.20372 1.21819 1.18952 1.21122 0.88916 0.94148 1.49676 0.91078 1.19744 0.96394 0.93372 0.90765 0.95402 1.22600 0.97946 0.94723 1.00917 1.22386 0.98404 0.98938 0.96412 1.22863 0.98151 0.99574 0.95506 1.21995 0.95152 0.99384 0.92884 0.91366 1.21666 1.00170 0.95563 0.96312 1.21792 0.96880 0.98505 0.93693 1.22758 0.95682 1.00570 0.96759 1.22565 0.99333 0.98624 0.96125 1.22345 0.96674 0.99004 0.98117 1.22239 0.95580 1.01432 0.96771 0.92874 0.94713 0.91873 0.92548 0.93653 0.92490 0.92517 0.91664 0.93013 0.91404 0.91050 0.91614 0.92047 0.92263 0.92426 0.92004 0.92367 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 21.95 26.80 -169.99 -4.56 17.40 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.39 6.86 56.52 0.39 -6.01 16 7 C -0.50 -14.00 8.60 -34.44 -0.30 -14.30 16 8 H 0.07 2.17 7.87 -52.49 -0.41 1.76 16 9 C 0.02 0.38 1.95 -90.65 -0.18 0.20 16 10 H 0.03 0.67 5.45 -51.93 -0.28 0.38 16 11 C -0.12 -2.66 6.22 -25.50 -0.16 -2.82 16 12 C -0.12 -2.20 6.85 -24.96 -0.17 -2.37 16 13 C -0.12 -2.06 4.47 -24.74 -0.11 -2.17 16 14 C -0.08 -1.48 2.42 -88.96 -0.22 -1.70 16 15 H 0.07 1.44 7.73 -51.93 -0.40 1.03 16 16 C -0.10 -1.75 3.91 -26.73 -0.10 -1.86 16 17 C -0.09 -1.31 2.93 -89.51 -0.26 -1.57 16 18 C -0.12 -1.55 4.49 -25.03 -0.11 -1.66 16 19 C -0.13 -1.43 6.91 -24.70 -0.17 -1.60 16 20 C -0.12 -1.40 6.83 -25.08 -0.17 -1.57 16 21 C -0.12 -1.59 6.46 -25.62 -0.17 -1.76 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 24 H 0.06 1.45 7.67 -51.93 -0.40 1.06 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.85 5.91 -51.93 -0.31 0.54 16 28 H 0.06 0.90 6.74 -51.93 -0.35 0.55 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.89 7.98 -51.93 -0.41 0.47 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 33 H 0.07 0.83 6.51 -51.93 -0.34 0.49 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.86 7.67 -51.93 -0.40 0.46 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -29.16 288.47 -8.63 -37.79 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.99 Total: -1.00 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -2.21 Total: -31.33 kcal Atomic # 7 Polarization: -27.99 SS G_CDS: 0.77 Total: -27.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.56 Total: 17.40 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.16 -8.63 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.632 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds