Wall clock time and date at job start Mon Mar 30 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99786 * 2 1 4 4 H 1.48502 * 109.46901 * 264.66342 * 3 2 1 5 5 H 1.48495 * 109.47455 * 24.66620 * 3 2 1 6 6 H 1.48505 * 109.46933 * 144.66859 * 3 2 1 7 7 C 1.37873 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 0.84191 * 7 2 1 9 9 C 1.50700 * 120.00111 * 180.84897 * 7 2 1 10 10 H 1.08999 * 110.01685 * 331.24721 * 9 7 2 11 11 C 1.53877 * 110.07172 * 92.65771 * 9 7 2 12 12 C 1.54474 * 106.68219 * 119.46921 * 11 9 7 13 13 C 1.54893 * 104.09890 * 23.34054 * 12 11 9 14 14 C 1.54266 * 110.03458 * 209.85236 * 9 7 2 15 15 H 1.09004 * 110.59567 * 335.78784 * 14 9 7 16 16 C 1.53001 * 110.48491 * 98.37491 * 14 9 7 17 17 C 1.52999 * 109.46973 * 181.22802 * 16 14 9 18 18 C 1.54263 * 110.03615 * 292.91073 * 17 16 14 19 19 C 1.54964 * 104.16192 * 217.13705 * 18 17 16 20 20 C 1.54889 * 102.77568 * 37.88370 * 19 18 17 21 21 C 1.53872 * 110.03396 * 175.69021 * 17 16 14 22 22 H 0.96998 * 120.00053 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.03274 * 238.58927 * 11 9 7 24 24 H 1.08992 * 110.03425 * 359.97438 * 11 9 7 25 25 H 1.09001 * 110.40052 * 264.76073 * 12 11 9 26 26 H 1.08999 * 110.66135 * 142.05201 * 12 11 9 27 27 H 1.09003 * 110.75216 * 203.89597 * 13 12 11 28 28 H 1.08997 * 110.75534 * 80.70747 * 13 12 11 29 29 H 1.08997 * 109.47188 * 301.23337 * 16 14 9 30 30 H 1.08998 * 109.46772 * 61.23091 * 16 14 9 31 31 H 1.09008 * 110.01327 * 54.30234 * 17 16 14 32 32 H 1.08998 * 110.48459 * 335.78644 * 18 17 16 33 33 H 1.09000 * 110.48563 * 98.42125 * 18 17 16 34 34 H 1.08998 * 110.71853 * 279.57455 * 19 18 17 35 35 H 1.08997 * 110.92429 * 156.29417 * 19 18 17 36 36 H 1.09004 * 110.48579 * 203.40627 * 20 19 18 37 37 H 1.09004 * 110.48442 * 80.76269 * 20 19 18 38 38 H 1.09006 * 110.03455 * 238.57432 * 21 17 16 39 39 H 1.09001 * 110.03289 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9813 -1.3940 5 1 1.3948 2.6826 0.5843 6 1 3.4858 1.4753 0.8097 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0128 9 6 3.5114 -1.1941 0.0199 10 1 3.8908 -0.2929 -0.4617 11 6 4.0209 -1.2712 1.4698 12 6 4.8555 -2.5666 1.5782 13 6 5.2946 -2.8557 0.1213 14 6 4.0491 -2.4461 -0.7034 15 1 3.3060 -3.2435 -0.6936 16 6 4.4472 -2.1045 -2.1407 17 6 4.9477 -3.3672 -2.8450 18 6 6.2734 -3.8360 -2.2106 19 6 7.1037 -4.3588 -3.4100 20 6 6.7496 -3.3550 -4.5352 21 6 5.2501 -3.0619 -4.3226 22 1 -0.4850 0.8400 -0.0004 23 1 4.6476 -0.4075 1.6918 24 1 3.1784 -1.3082 2.1602 25 1 4.2424 -3.3826 1.9609 26 1 5.7261 -2.4110 2.2154 27 1 5.5154 -3.9147 -0.0127 28 1 6.1558 -2.2455 -0.1509 29 1 3.5819 -1.7101 -2.6734 30 1 5.2395 -1.3561 -2.1301 31 1 4.1993 -4.1564 -2.7724 32 1 6.7824 -3.0008 -1.7296 33 1 6.0911 -4.6367 -1.4938 34 1 6.7953 -5.3683 -3.6818 35 1 8.1703 -4.3291 -3.1875 36 1 6.9152 -3.8052 -5.5141 37 1 7.3354 -2.4418 -4.4301 38 1 4.6491 -3.7035 -4.9670 39 1 5.0406 -2.0141 -4.5378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260969510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:47 Heat of formation + Delta-G solvation = -59.338922 kcal Electronic energy + Delta-G solvation = -15926.661011 eV Core-core repulsion = 13638.400639 eV Total energy + Delta-G solvation = -2288.260373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18972 -38.15621 -34.57415 -32.81532 -30.80350 -29.58424 -28.25730 -26.16133 -24.31258 -21.79258 -20.82338 -20.52167 -20.05078 -18.87893 -16.99403 -16.48422 -15.93872 -15.52212 -15.08301 -14.85817 -14.43811 -14.27655 -13.87737 -13.77049 -13.09142 -12.90889 -12.59747 -12.31111 -12.00604 -11.91580 -11.87931 -11.78264 -11.54188 -11.44872 -11.26173 -11.22182 -11.03438 -10.96198 -10.85047 -10.77411 -10.57538 -8.26754 -6.27037 1.31884 1.33730 1.45275 2.35782 3.09390 3.74439 3.85698 3.87335 4.10831 4.13037 4.16422 4.46358 4.60099 4.68919 4.71110 4.79101 4.82047 4.86040 4.89462 4.99642 5.01093 5.06390 5.08288 5.12008 5.18045 5.26135 5.27685 5.32398 5.44896 5.47462 5.54263 5.57140 5.58636 5.66956 5.76389 5.79221 5.87836 6.39628 6.79548 7.36807 8.90878 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.008239 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.774578 B = 3397.457803 C = 3837.389383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.005 3.995 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.501 4.501 8 H 0.025 0.975 9 C 0.009 3.991 10 H 0.026 0.974 11 C -0.126 4.126 12 C -0.119 4.119 13 C -0.110 4.110 14 C -0.075 4.075 15 H 0.042 0.958 16 C -0.094 4.094 17 C -0.089 4.089 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.125 4.125 22 H 0.263 0.737 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.899 -6.248 -5.294 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.191 4.191 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.168 1.168 7 C -0.539 4.539 8 H 0.044 0.956 9 C -0.010 4.010 10 H 0.044 0.956 11 C -0.164 4.164 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.094 4.094 15 H 0.060 0.940 16 C -0.132 4.132 17 C -0.108 4.108 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.163 4.163 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.742 -6.133 -5.292 18.599 hybrid contribution -0.956 0.979 0.095 1.372 sum 15.786 -5.154 -5.197 17.400 Atomic orbital electron populations 1.70071 1.08240 1.27738 1.53782 1.25950 0.95422 1.02975 0.94722 0.85847 0.79509 0.78899 0.79357 1.19333 1.21669 1.16825 1.21413 0.91720 0.92329 1.48430 0.95643 1.19809 0.93112 0.95181 0.92908 0.95597 1.22492 0.97853 0.97598 0.98477 1.22378 0.98838 0.96553 0.97865 1.22815 0.96768 1.01469 0.93631 1.21894 0.96199 0.96811 0.94471 0.93984 1.21595 0.99229 0.97396 0.94976 1.21747 0.97791 0.96443 0.94786 1.22729 0.94533 1.00759 0.97591 1.22548 1.00000 0.98666 0.94880 1.22342 0.94857 0.99455 0.99132 1.22243 0.97426 1.00990 0.95597 0.92853 0.93498 0.94579 0.92876 0.90447 0.90018 0.90599 0.94814 0.92068 0.92589 0.90859 0.91170 0.91470 0.90545 0.90959 0.91638 0.92034 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.67 13.96 21.45 0.30 -61.38 16 2 C 0.00 0.29 5.47 84.65 0.46 0.76 16 3 Si 0.94 45.70 26.80 68.60 1.84 47.54 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.24 -11.01 6.86 99.48 0.68 -10.33 16 7 C -0.50 -29.26 8.60 25.60 0.22 -29.04 16 8 H 0.03 1.66 7.87 -2.91 -0.02 1.64 16 9 C 0.01 0.41 1.95 -10.81 -0.02 0.39 16 10 H 0.03 1.21 5.45 -2.39 -0.01 1.20 16 11 C -0.13 -5.27 6.22 31.39 0.20 -5.07 16 12 C -0.12 -3.90 6.85 31.74 0.22 -3.68 16 13 C -0.11 -3.32 4.47 31.89 0.14 -3.17 16 14 C -0.08 -2.92 2.42 -9.72 -0.02 -2.94 16 15 H 0.04 1.83 7.73 -2.38 -0.02 1.81 16 16 C -0.09 -3.28 3.91 30.59 0.12 -3.16 16 17 C -0.09 -2.47 2.93 -10.07 -0.03 -2.50 16 18 C -0.12 -2.66 4.49 31.69 0.14 -2.52 16 19 C -0.12 -2.27 6.91 31.91 0.22 -2.05 16 20 C -0.12 -2.33 6.83 31.67 0.22 -2.11 16 21 C -0.12 -3.05 6.46 31.32 0.20 -2.84 16 22 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 23 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 24 H 0.04 1.66 7.67 -2.39 -0.02 1.65 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 2.12 5.91 -2.39 -0.01 2.10 16 28 H 0.08 2.06 6.74 -2.39 -0.02 2.04 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.99 7.98 -2.39 -0.02 1.97 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.07 1.63 5.95 -2.39 -0.01 1.62 16 33 H 0.07 1.51 6.51 -2.39 -0.02 1.50 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.05 1.42 7.67 -2.39 -0.02 1.41 16 Total: -1.00 -65.61 288.47 5.16 -60.44 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.96 Total: 11.35 kcal Atomic # 6 Polarization: -60.02 SS G_CDS: 2.06 Total: -57.96 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.30 Total: -61.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.84 Total: 47.54 kcal Total: -65.61 5.16 -60.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.103 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds