Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48502 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47213 * 300.00035 * 3 2 1 6 6 H 1.48505 * 109.47280 * 59.99785 * 3 2 1 7 7 C 1.37871 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00040 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.01544 * 301.38639 * 9 7 2 11 11 C 1.54257 * 110.03365 * 62.83089 * 9 7 2 12 12 C 1.54893 * 104.19694 * 142.89593 * 11 9 7 13 13 C 1.54888 * 102.74691 * 322.05498 * 12 11 9 14 14 C 1.53881 * 110.03340 * 180.02562 * 9 7 2 15 15 H 1.08999 * 110.03483 * 121.38056 * 14 9 7 16 16 C 1.53004 * 110.02776 * 359.97438 * 14 9 7 17 17 C 1.53005 * 109.46571 * 175.00504 * 16 14 9 18 18 C 1.54893 * 110.59682 * 289.83697 * 17 16 14 19 19 C 1.54887 * 102.74533 * 203.32744 * 18 17 16 20 20 C 1.54266 * 104.19888 * 37.94403 * 19 18 17 21 21 C 1.53872 * 106.59640 * 336.38805 * 20 19 18 22 22 H 0.97004 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.48832 * 261.56683 * 11 9 7 24 24 H 1.08994 * 110.48798 * 24.21930 * 11 9 7 25 25 H 1.09005 * 110.75718 * 80.37180 * 12 11 9 26 26 H 1.09001 * 110.75725 * 203.56126 * 12 11 9 27 27 H 1.08996 * 110.49147 * 279.26823 * 13 12 11 28 28 H 1.09004 * 110.48691 * 156.61656 * 13 12 11 29 29 H 1.08994 * 109.47227 * 55.00452 * 16 14 9 30 30 H 1.08998 * 109.47173 * 294.99739 * 16 14 9 31 31 H 1.09001 * 110.43639 * 52.45944 * 17 16 14 32 32 H 1.09001 * 110.75228 * 85.01480 * 18 17 16 33 33 H 1.09000 * 110.75571 * 321.64113 * 18 17 16 34 34 H 1.09001 * 110.48816 * 279.26329 * 19 18 17 35 35 H 1.09004 * 110.48531 * 156.62545 * 19 18 17 36 36 H 1.09003 * 110.03179 * 95.67576 * 20 19 18 37 37 H 1.09005 * 110.03005 * 217.10316 * 20 19 18 38 38 H 1.09002 * 110.03208 * 119.28196 * 21 20 19 39 39 H 1.09000 * 110.03462 * 240.66592 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6022 -2.5553 0.8746 11 6 0.4143 -2.6261 -1.2891 12 6 0.5058 -4.1285 -1.6549 13 6 1.9688 -4.4809 -1.2882 14 6 2.2395 -3.6784 0.0018 15 1 2.0700 -4.3068 0.8762 16 6 3.6778 -3.1567 0.0021 17 6 4.6472 -4.3336 0.1290 18 6 4.5709 -4.9519 1.5471 19 6 5.9476 -5.6469 1.6913 20 6 6.9328 -4.6822 0.9997 21 6 6.1060 -3.8472 0.0063 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6211 -2.3417 -1.1016 24 1 0.8414 -2.0136 -2.0830 25 1 -0.1938 -4.7146 -1.0588 26 1 0.3245 -4.2787 -2.7192 27 1 2.6471 -4.1678 -2.0819 28 1 2.0680 -5.5500 -1.1000 29 1 3.8180 -2.4781 0.8434 30 1 3.8717 -2.6252 -0.9296 31 1 4.4315 -5.0876 -0.6281 32 1 3.7622 -5.6802 1.6079 33 1 4.4497 -4.1745 2.3014 34 1 5.9420 -6.6130 1.1867 35 1 6.2061 -5.7666 2.7435 36 1 7.3980 -4.0302 1.7390 37 1 7.6970 -5.2479 0.4666 38 1 6.1699 -2.7899 0.2635 39 1 6.4695 -4.0069 -1.0088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = -42.367316 kcal Electronic energy + Delta-G solvation = -15938.476053 eV Core-core repulsion = 13650.951625 eV Total energy + Delta-G solvation = -2287.524429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.59100 -36.77545 -32.37128 -31.38579 -28.43559 -28.19990 -26.93621 -23.86718 -23.13257 -20.39010 -19.86188 -18.95446 -18.31690 -16.02329 -15.31349 -14.86355 -14.33813 -14.26393 -13.62178 -13.33506 -13.06244 -12.31830 -12.15464 -11.63183 -11.39919 -11.36229 -10.97912 -10.89622 -10.79798 -10.44983 -10.38970 -10.30570 -10.07137 -9.88407 -9.64806 -9.57786 -9.47816 -9.30564 -8.90156 -8.39152 -8.26315 -5.91068 -3.91591 3.33585 3.42083 3.44955 4.51417 4.89991 4.95501 5.01914 5.41442 5.61891 5.68848 5.73042 5.80434 5.85135 5.87603 5.94766 5.99215 6.06567 6.11700 6.24054 6.37457 6.44402 6.51318 6.52812 6.55970 6.59251 6.77398 6.79813 6.88100 6.91692 7.14890 7.23328 7.33091 7.41719 7.54958 7.83941 8.01394 8.13810 8.59110 9.11799 9.72153 11.19149 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.009101 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.138173 B = 3075.899702 C = 3894.141630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.047 3.953 10 H 0.023 0.977 11 C -0.091 4.091 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.083 4.083 15 H 0.046 0.954 16 C -0.086 4.086 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.256 0.744 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 -9.149 0.284 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.028 3.972 10 H 0.041 0.959 11 C -0.129 4.129 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.101 4.101 15 H 0.065 0.935 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.155 4.155 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.160 4.160 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.433 -9.017 0.288 12.350 hybrid contribution 0.366 1.007 -0.051 1.073 sum 8.799 -8.010 0.237 11.901 Atomic orbital electron populations 1.70007 1.05883 1.25961 1.51287 1.25029 0.94737 0.98887 0.95572 0.86692 0.80272 0.84572 0.77396 1.19808 1.21289 1.21295 1.21689 0.93683 0.90292 1.49562 0.91016 1.19275 0.92247 0.91809 0.93821 0.95918 1.22259 1.00349 0.90917 0.99407 1.22622 0.96120 0.99810 0.98613 1.22382 0.96679 0.97600 0.98306 1.21780 0.95838 0.97258 0.95230 0.93544 1.21738 0.93216 0.94997 1.02373 1.22191 0.94408 0.98603 0.96359 1.22547 0.95863 0.99386 0.97687 1.22367 0.95988 0.98324 0.99643 1.22126 0.97812 0.97871 0.98320 1.22218 0.95480 0.99860 0.98436 0.93436 0.92995 0.93171 0.93232 0.93796 0.92582 0.94043 0.91198 0.92014 0.91626 0.92032 0.91404 0.92245 0.92386 0.92342 0.92661 0.91722 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 12.43 55.43 0.69 -25.31 16 2 C 0.06 1.63 5.33 -17.82 -0.09 1.53 16 3 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -13.77 7.50 -34.44 -0.26 -14.03 16 8 H 0.07 1.86 4.66 -52.49 -0.24 1.61 16 9 C 0.05 1.16 2.81 -90.66 -0.26 0.91 16 10 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 11 C -0.09 -2.17 5.44 -25.07 -0.14 -2.31 16 12 C -0.13 -2.61 6.91 -24.74 -0.17 -2.78 16 13 C -0.11 -2.06 5.46 -25.04 -0.14 -2.20 16 14 C -0.08 -1.67 2.87 -89.47 -0.26 -1.93 16 15 H 0.05 0.91 7.34 -51.93 -0.38 0.53 16 16 C -0.09 -1.63 2.40 -26.73 -0.06 -1.69 16 17 C -0.10 -1.50 2.77 -88.96 -0.25 -1.75 16 18 C -0.12 -1.68 5.66 -24.74 -0.14 -1.82 16 19 C -0.13 -1.52 6.83 -25.07 -0.17 -1.70 16 20 C -0.12 -1.50 6.80 -25.61 -0.17 -1.68 16 21 C -0.12 -1.71 6.37 -25.61 -0.16 -1.88 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.05 1.32 7.97 -51.93 -0.41 0.91 16 24 H 0.05 1.27 7.85 -51.93 -0.41 0.86 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.02 7.76 -51.93 -0.40 0.62 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.44 6.63 -51.93 -0.34 1.10 16 30 H 0.06 1.25 7.30 -51.93 -0.38 0.87 16 31 H 0.07 1.00 7.37 -51.93 -0.38 0.62 16 32 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 33 H 0.07 1.03 7.97 -51.93 -0.41 0.61 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.95 7.84 -51.93 -0.41 0.55 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -27.64 292.64 -9.32 -36.96 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.13 Total: -1.16 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -2.27 Total: -31.31 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.69 Total: -25.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.64 -9.32 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.408 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds