Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48502 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47213 * 300.00035 * 3 2 1 6 6 H 1.48505 * 109.47280 * 59.99785 * 3 2 1 7 7 C 1.37871 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00040 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.01544 * 301.38639 * 9 7 2 11 11 C 1.54257 * 110.03365 * 62.83089 * 9 7 2 12 12 C 1.54893 * 104.19694 * 142.89593 * 11 9 7 13 13 C 1.54888 * 102.74691 * 322.05498 * 12 11 9 14 14 C 1.53881 * 110.03340 * 180.02562 * 9 7 2 15 15 H 1.08999 * 110.03483 * 121.38056 * 14 9 7 16 16 C 1.53004 * 110.02776 * 359.97438 * 14 9 7 17 17 C 1.53005 * 109.46571 * 175.00504 * 16 14 9 18 18 C 1.54893 * 110.59682 * 289.83697 * 17 16 14 19 19 C 1.54887 * 102.74533 * 203.32744 * 18 17 16 20 20 C 1.54266 * 104.19888 * 37.94403 * 19 18 17 21 21 C 1.53872 * 106.59640 * 336.38805 * 20 19 18 22 22 H 0.97004 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.48832 * 261.56683 * 11 9 7 24 24 H 1.08994 * 110.48798 * 24.21930 * 11 9 7 25 25 H 1.09005 * 110.75718 * 80.37180 * 12 11 9 26 26 H 1.09001 * 110.75725 * 203.56126 * 12 11 9 27 27 H 1.08996 * 110.49147 * 279.26823 * 13 12 11 28 28 H 1.09004 * 110.48691 * 156.61656 * 13 12 11 29 29 H 1.08994 * 109.47227 * 55.00452 * 16 14 9 30 30 H 1.08998 * 109.47173 * 294.99739 * 16 14 9 31 31 H 1.09001 * 110.43639 * 52.45944 * 17 16 14 32 32 H 1.09001 * 110.75228 * 85.01480 * 18 17 16 33 33 H 1.09000 * 110.75571 * 321.64113 * 18 17 16 34 34 H 1.09001 * 110.48816 * 279.26329 * 19 18 17 35 35 H 1.09004 * 110.48531 * 156.62545 * 19 18 17 36 36 H 1.09003 * 110.03179 * 95.67576 * 20 19 18 37 37 H 1.09005 * 110.03005 * 217.10316 * 20 19 18 38 38 H 1.09002 * 110.03208 * 119.28196 * 21 20 19 39 39 H 1.09000 * 110.03462 * 240.66592 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6022 -2.5553 0.8746 11 6 0.4143 -2.6261 -1.2891 12 6 0.5058 -4.1285 -1.6549 13 6 1.9688 -4.4809 -1.2882 14 6 2.2395 -3.6784 0.0018 15 1 2.0700 -4.3068 0.8762 16 6 3.6778 -3.1567 0.0021 17 6 4.6472 -4.3336 0.1290 18 6 4.5709 -4.9519 1.5471 19 6 5.9476 -5.6469 1.6913 20 6 6.9328 -4.6822 0.9997 21 6 6.1060 -3.8472 0.0063 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6211 -2.3417 -1.1016 24 1 0.8414 -2.0136 -2.0830 25 1 -0.1938 -4.7146 -1.0588 26 1 0.3245 -4.2787 -2.7192 27 1 2.6471 -4.1678 -2.0819 28 1 2.0680 -5.5500 -1.1000 29 1 3.8180 -2.4781 0.8434 30 1 3.8717 -2.6252 -0.9296 31 1 4.4315 -5.0876 -0.6281 32 1 3.7622 -5.6802 1.6079 33 1 4.4497 -4.1745 2.3014 34 1 5.9420 -6.6130 1.1867 35 1 6.2061 -5.7666 2.7435 36 1 7.3980 -4.0302 1.7390 37 1 7.6970 -5.2479 0.4666 38 1 6.1699 -2.7899 0.2635 39 1 6.4695 -4.0069 -1.0088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260969513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = -54.789946 kcal Electronic energy + Delta-G solvation = -15939.014739 eV Core-core repulsion = 13650.951625 eV Total energy + Delta-G solvation = -2288.063115 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03144 -38.20793 -34.44333 -32.83190 -30.05018 -29.50762 -28.39357 -25.88034 -24.62459 -21.66139 -21.21571 -20.37191 -20.09697 -17.81736 -16.72691 -16.49725 -16.17538 -15.49817 -15.30427 -14.73400 -14.25041 -14.13278 -13.73583 -13.30125 -13.12504 -12.87572 -12.84001 -12.31226 -11.97588 -11.86079 -11.79674 -11.55405 -11.46919 -11.40520 -11.26373 -11.21626 -11.14913 -10.92089 -10.64500 -10.40412 -10.35726 -8.05975 -6.11856 1.37894 1.40295 1.50702 2.45703 3.25619 3.79830 3.88537 3.94500 4.16008 4.17507 4.27450 4.57996 4.62807 4.68973 4.83630 4.84047 4.88834 4.91806 4.99305 5.02752 5.05625 5.10240 5.16203 5.22068 5.25436 5.29771 5.36995 5.44113 5.51499 5.54428 5.58606 5.61072 5.74425 5.79275 5.85386 6.01601 6.06776 6.50361 7.01200 7.55113 9.04213 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.009101 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.138173 B = 3075.899702 C = 3894.141630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.003 3.997 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.036 3.964 10 H -0.017 1.017 11 C -0.087 4.087 12 C -0.125 4.125 13 C -0.103 4.103 14 C -0.078 4.078 15 H 0.052 0.948 16 C -0.076 4.076 17 C -0.092 4.092 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.124 4.124 22 H 0.254 0.746 23 H 0.022 0.978 24 H 0.027 0.973 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 -10.903 -0.154 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.096 0.904 9 C 0.018 3.982 10 H 0.001 0.999 11 C -0.125 4.125 12 C -0.162 4.162 13 C -0.140 4.140 14 C -0.097 4.097 15 H 0.070 0.930 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.162 4.162 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.428 -10.778 -0.149 14.998 hybrid contribution -0.295 1.568 0.113 1.600 sum 10.133 -9.210 -0.036 13.693 Atomic orbital electron populations 1.70150 1.07341 1.26535 1.52808 1.25814 0.95514 1.02343 0.95742 0.85714 0.79509 0.80556 0.77194 1.18686 1.21126 1.21203 1.22115 0.94208 0.91326 1.48167 0.90430 1.19324 0.92881 0.93366 0.92640 0.99885 1.22070 0.98032 0.94198 0.98220 1.22558 0.97396 0.96027 1.00229 1.22326 0.95650 0.99121 0.96914 1.21693 0.95324 0.95730 0.96926 0.92953 1.21535 0.93481 0.96053 1.00291 1.22102 0.94267 0.97137 0.97518 1.22542 0.97688 0.99190 0.96350 1.22347 0.94131 0.98556 1.00659 1.22122 0.97928 0.97804 0.98013 1.22220 0.94863 0.99351 0.99736 0.93663 0.95924 0.95390 0.92152 0.91570 0.92153 0.90730 0.93750 0.93738 0.90541 0.91702 0.93010 0.90851 0.91242 0.92125 0.90807 0.93249 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 12.43 21.45 0.27 -55.84 16 2 C 0.00 0.17 5.33 84.65 0.45 0.62 16 3 Si 0.94 44.90 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.52 -28.65 7.50 25.60 0.19 -28.46 16 8 H 0.08 4.10 4.66 -2.91 -0.01 4.09 16 9 C 0.04 1.86 2.81 -10.82 -0.03 1.83 16 10 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 11 C -0.09 -4.25 5.44 31.67 0.17 -4.07 16 12 C -0.12 -4.65 6.91 31.89 0.22 -4.43 16 13 C -0.10 -3.52 5.46 31.69 0.17 -3.34 16 14 C -0.08 -3.13 2.87 -10.05 -0.03 -3.16 16 15 H 0.05 2.02 7.34 -2.39 -0.02 2.00 16 16 C -0.08 -2.86 2.40 30.60 0.07 -2.79 16 17 C -0.09 -2.65 2.77 -9.72 -0.03 -2.67 16 18 C -0.12 -3.18 5.66 31.89 0.18 -3.00 16 19 C -0.12 -2.50 6.83 31.67 0.22 -2.28 16 20 C -0.12 -2.57 6.80 31.32 0.21 -2.35 16 21 C -0.12 -3.21 6.37 31.32 0.20 -3.01 16 22 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 23 H 0.02 1.19 7.97 -2.39 -0.02 1.17 16 24 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 25 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 2.03 7.76 -2.39 -0.02 2.01 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.04 1.86 6.63 -2.39 -0.02 1.84 16 30 H 0.04 1.79 7.30 -2.39 -0.02 1.78 16 31 H 0.08 2.07 7.37 -2.39 -0.02 2.06 16 32 H 0.06 1.66 7.93 -2.39 -0.02 1.64 16 33 H 0.05 1.52 7.97 -2.39 -0.02 1.50 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.05 1.41 7.84 -2.39 -0.02 1.39 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -61.07 292.64 5.28 -55.80 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.98 Total: 10.24 kcal Atomic # 6 Polarization: -59.12 SS G_CDS: 2.00 Total: -57.11 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.27 Total: -55.84 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.07 5.28 -55.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.007 kcal (2) G-P(sol) polarization free energy of solvation -61.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds