Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00263 * 2 1 4 4 H 1.48501 * 109.46704 * 239.99261 * 3 2 1 5 5 H 1.48498 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47117 * 119.99788 * 3 2 1 7 7 C 1.37880 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00078 * 180.28244 * 7 2 1 9 9 C 1.50700 * 120.00020 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.01443 * 59.93765 * 9 7 2 11 11 C 1.54270 * 110.03355 * 298.54850 * 9 7 2 12 12 C 1.54893 * 104.19177 * 217.10143 * 11 9 7 13 13 C 1.54884 * 102.74982 * 37.94393 * 12 11 9 14 14 C 1.53870 * 110.03465 * 181.37702 * 9 7 2 15 15 H 1.08999 * 110.03625 * 238.56814 * 14 9 7 16 16 C 1.52994 * 110.03257 * 0.02562 * 14 9 7 17 17 C 1.53004 * 109.47327 * 186.40740 * 16 14 9 18 18 C 1.54262 * 110.03270 * 290.10787 * 17 16 14 19 19 C 1.54889 * 104.19714 * 217.10422 * 18 17 16 20 20 C 1.54895 * 102.74826 * 37.94071 * 19 18 17 21 21 C 1.53876 * 110.03054 * 172.93998 * 17 16 14 22 22 H 0.97007 * 119.99633 * 0.02562 * 1 2 3 23 23 H 1.08993 * 110.48161 * 335.78016 * 11 9 7 24 24 H 1.09002 * 110.48493 * 98.29568 * 11 9 7 25 25 H 1.09000 * 110.74821 * 156.25711 * 12 11 9 26 26 H 1.08997 * 110.75435 * 279.62338 * 12 11 9 27 27 H 1.09001 * 110.48936 * 80.73241 * 13 12 11 28 28 H 1.09000 * 110.48476 * 203.24676 * 13 12 11 29 29 H 1.08999 * 109.47546 * 306.41022 * 16 14 9 30 30 H 1.09001 * 109.47206 * 66.40791 * 16 14 9 31 31 H 1.08998 * 110.01389 * 51.54800 * 17 16 14 32 32 H 1.09000 * 110.48829 * 335.78260 * 18 17 16 33 33 H 1.08996 * 110.48800 * 98.42544 * 18 17 16 34 34 H 1.08995 * 110.75402 * 279.62968 * 19 18 17 35 35 H 1.09003 * 110.91339 * 156.32937 * 19 18 17 36 36 H 1.08998 * 110.48795 * 203.37956 * 20 19 18 37 37 H 1.09003 * 110.59716 * 80.79118 * 20 19 18 38 38 H 1.09002 * 110.03164 * 238.57169 * 21 17 16 39 39 H 1.08994 * 110.03423 * 359.95220 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0051 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5659 -0.8861 11 6 0.3864 -2.6102 1.2734 12 6 0.4698 -4.1079 1.6596 13 6 1.9402 -4.4648 1.3291 14 6 2.2389 -3.6783 0.0359 15 1 2.0879 -4.3182 -0.8335 16 6 3.6769 -3.1566 0.0607 17 6 4.6482 -4.3321 -0.0654 18 6 4.6214 -5.1802 1.2229 19 6 6.0938 -5.6185 1.4199 20 6 6.8861 -4.3621 0.9808 21 6 6.0881 -3.8118 -0.2193 22 1 -0.4850 0.8401 -0.0004 23 1 0.7965 -1.9877 2.0685 24 1 -0.6442 -2.3259 1.0605 25 1 0.2686 -4.2444 2.7222 26 1 -0.2169 -4.7013 1.0560 27 1 2.6013 -4.1418 2.1333 28 1 2.0436 -5.5364 1.1586 29 1 3.8285 -2.4692 -0.7716 30 1 3.8580 -2.6348 1.0004 31 1 4.3797 -4.9474 -0.9241 32 1 4.2859 -4.5795 2.0682 33 1 3.9783 -6.0507 1.0932 34 1 6.3326 -6.4685 0.7807 35 1 6.2929 -5.8551 2.4651 36 1 7.8958 -4.6355 0.6745 37 1 6.9183 -3.6282 1.7862 38 1 6.5188 -4.1754 -1.1523 39 1 6.0949 -2.7220 -0.2050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -37.027893 kcal Electronic energy + Delta-G solvation = -16070.335864 eV Core-core repulsion = 13783.042970 eV Total energy + Delta-G solvation = -2287.292894 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78569 -36.64727 -32.38061 -31.34554 -28.73373 -28.09834 -26.69088 -23.96215 -23.21255 -20.55974 -19.32196 -19.25314 -18.30880 -16.01141 -15.46208 -14.80866 -14.45087 -14.13291 -13.58275 -13.29478 -12.99097 -12.47080 -12.09381 -11.60196 -11.41059 -11.11818 -10.91087 -10.86783 -10.75949 -10.71809 -10.47428 -10.38476 -9.99133 -9.85018 -9.58037 -9.52685 -9.39862 -9.26354 -8.89255 -8.40440 -8.25723 -5.90619 -3.91427 3.35978 3.40983 3.43100 4.51453 4.90535 4.96325 5.04925 5.41611 5.59361 5.68620 5.74800 5.80171 5.86346 5.92123 5.97912 5.98682 6.05880 6.12483 6.27431 6.37483 6.43198 6.47428 6.52438 6.60804 6.66460 6.74609 6.82346 6.88120 6.97640 7.17674 7.21162 7.31610 7.42462 7.55826 7.84762 8.01889 8.14199 8.59029 9.11353 9.72127 11.19386 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.009361 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.778618 B = 2990.523486 C = 3811.237694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.048 3.952 10 H 0.021 0.979 11 C -0.090 4.090 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.083 4.083 15 H 0.043 0.957 16 C -0.088 4.088 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.257 0.743 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.601 -9.041 2.144 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.711 3.289 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.029 3.971 10 H 0.040 0.960 11 C -0.128 4.128 12 C -0.174 4.174 13 C -0.151 4.151 14 C -0.101 4.101 15 H 0.062 0.938 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.156 4.156 19 C -0.166 4.166 20 C -0.161 4.161 21 C -0.159 4.159 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.443 -8.904 2.133 12.454 hybrid contribution 0.360 1.002 -0.020 1.065 sum 8.803 -7.902 2.112 12.017 Atomic orbital electron populations 1.69988 1.05884 1.26186 1.51061 1.25026 0.94740 0.98862 0.95540 0.86807 0.79694 0.83880 0.78482 1.20422 1.21535 1.20417 1.21620 0.93600 0.90325 1.49895 0.91124 1.19261 0.92126 0.91767 0.93907 0.96042 1.22245 1.00346 0.90954 0.99291 1.22658 0.96318 0.99817 0.98615 1.22595 0.96397 0.97662 0.98445 1.21768 0.95861 0.97277 0.95225 0.93829 1.21811 0.93256 0.94993 1.02410 1.21956 0.94791 0.97679 0.97161 1.22672 0.95086 0.99288 0.98591 1.22541 0.96471 0.97385 1.00174 1.22342 0.98053 0.97414 0.98327 1.22230 0.95485 1.00846 0.97379 0.93318 0.93193 0.92975 0.93828 0.93290 0.92078 0.93834 0.91195 0.91922 0.92081 0.90926 0.92096 0.92233 0.92338 0.92601 0.91902 0.92718 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 12.32 55.43 0.68 -25.32 16 2 C 0.06 1.65 5.32 -17.82 -0.09 1.55 16 3 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.85 7.52 -34.44 -0.26 -14.11 16 8 H 0.07 1.82 4.65 -52.49 -0.24 1.58 16 9 C 0.05 1.19 2.84 -90.65 -0.26 0.93 16 10 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 11 C -0.09 -2.15 5.37 -25.07 -0.13 -2.29 16 12 C -0.14 -2.66 6.91 -24.74 -0.17 -2.83 16 13 C -0.11 -2.07 4.61 -25.07 -0.12 -2.18 16 14 C -0.08 -1.68 2.92 -89.50 -0.26 -1.95 16 15 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 16 C -0.09 -1.66 2.44 -26.73 -0.07 -1.72 16 17 C -0.10 -1.50 2.91 -89.50 -0.26 -1.76 16 18 C -0.12 -1.67 4.60 -25.07 -0.12 -1.79 16 19 C -0.13 -1.55 6.91 -24.74 -0.17 -1.72 16 20 C -0.12 -1.53 6.83 -25.07 -0.17 -1.71 16 21 C -0.12 -1.70 6.46 -25.61 -0.17 -1.87 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.05 1.27 7.85 -51.93 -0.41 0.86 16 24 H 0.05 1.33 7.92 -51.93 -0.41 0.92 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.10 5.78 -51.93 -0.30 0.80 16 28 H 0.04 0.70 7.00 -51.93 -0.36 0.34 16 29 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 30 H 0.06 1.27 7.18 -51.93 -0.37 0.89 16 31 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.07 1.09 5.81 -51.93 -0.30 0.79 16 33 H 0.06 0.83 6.99 -51.93 -0.36 0.47 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -27.61 285.96 -9.14 -36.75 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.87 Total: -0.72 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -2.24 Total: -31.44 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.68 Total: -25.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.61 -9.14 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.279 kcal (2) G-P(sol) polarization free energy of solvation -27.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds