Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00263 * 2 1 4 4 H 1.48501 * 109.46704 * 239.99261 * 3 2 1 5 5 H 1.48498 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47117 * 119.99788 * 3 2 1 7 7 C 1.37880 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00078 * 180.28244 * 7 2 1 9 9 C 1.50700 * 120.00020 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.01443 * 59.93765 * 9 7 2 11 11 C 1.54270 * 110.03355 * 298.54850 * 9 7 2 12 12 C 1.54893 * 104.19177 * 217.10143 * 11 9 7 13 13 C 1.54884 * 102.74982 * 37.94393 * 12 11 9 14 14 C 1.53870 * 110.03465 * 181.37702 * 9 7 2 15 15 H 1.08999 * 110.03625 * 238.56814 * 14 9 7 16 16 C 1.52994 * 110.03257 * 0.02562 * 14 9 7 17 17 C 1.53004 * 109.47327 * 186.40740 * 16 14 9 18 18 C 1.54262 * 110.03270 * 290.10787 * 17 16 14 19 19 C 1.54889 * 104.19714 * 217.10422 * 18 17 16 20 20 C 1.54895 * 102.74826 * 37.94071 * 19 18 17 21 21 C 1.53876 * 110.03054 * 172.93998 * 17 16 14 22 22 H 0.97007 * 119.99633 * 0.02562 * 1 2 3 23 23 H 1.08993 * 110.48161 * 335.78016 * 11 9 7 24 24 H 1.09002 * 110.48493 * 98.29568 * 11 9 7 25 25 H 1.09000 * 110.74821 * 156.25711 * 12 11 9 26 26 H 1.08997 * 110.75435 * 279.62338 * 12 11 9 27 27 H 1.09001 * 110.48936 * 80.73241 * 13 12 11 28 28 H 1.09000 * 110.48476 * 203.24676 * 13 12 11 29 29 H 1.08999 * 109.47546 * 306.41022 * 16 14 9 30 30 H 1.09001 * 109.47206 * 66.40791 * 16 14 9 31 31 H 1.08998 * 110.01389 * 51.54800 * 17 16 14 32 32 H 1.09000 * 110.48829 * 335.78260 * 18 17 16 33 33 H 1.08996 * 110.48800 * 98.42544 * 18 17 16 34 34 H 1.08995 * 110.75402 * 279.62968 * 19 18 17 35 35 H 1.09003 * 110.91339 * 156.32937 * 19 18 17 36 36 H 1.08998 * 110.48795 * 203.37956 * 20 19 18 37 37 H 1.09003 * 110.59716 * 80.79118 * 20 19 18 38 38 H 1.09002 * 110.03164 * 238.57169 * 21 17 16 39 39 H 1.08994 * 110.03423 * 359.95220 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0051 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5659 -0.8861 11 6 0.3864 -2.6102 1.2734 12 6 0.4698 -4.1079 1.6596 13 6 1.9402 -4.4648 1.3291 14 6 2.2389 -3.6783 0.0359 15 1 2.0879 -4.3182 -0.8335 16 6 3.6769 -3.1566 0.0607 17 6 4.6482 -4.3321 -0.0654 18 6 4.6214 -5.1802 1.2229 19 6 6.0938 -5.6185 1.4199 20 6 6.8861 -4.3621 0.9808 21 6 6.0881 -3.8118 -0.2193 22 1 -0.4850 0.8401 -0.0004 23 1 0.7965 -1.9877 2.0685 24 1 -0.6442 -2.3259 1.0605 25 1 0.2686 -4.2444 2.7222 26 1 -0.2169 -4.7013 1.0560 27 1 2.6013 -4.1418 2.1333 28 1 2.0436 -5.5364 1.1586 29 1 3.8285 -2.4692 -0.7716 30 1 3.8580 -2.6348 1.0004 31 1 4.3797 -4.9474 -0.9241 32 1 4.2859 -4.5795 2.0682 33 1 3.9783 -6.0507 1.0932 34 1 6.3326 -6.4685 0.7807 35 1 6.2929 -5.8551 2.4651 36 1 7.8958 -4.6355 0.6745 37 1 6.9183 -3.6282 1.7862 38 1 6.5188 -4.1754 -1.1523 39 1 6.0949 -2.7220 -0.2050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260969515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -49.676921 kcal Electronic energy + Delta-G solvation = -16070.884367 eV Core-core repulsion = 13783.042970 eV Total energy + Delta-G solvation = -2287.841397 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21511 -38.09134 -34.44538 -32.79412 -30.27704 -29.47070 -28.15039 -25.93466 -24.73612 -21.77162 -20.82974 -20.66756 -19.97400 -17.85113 -16.89214 -16.38002 -16.20107 -15.49109 -15.19648 -14.75183 -14.35119 -14.07235 -13.62914 -13.32386 -13.14797 -12.79526 -12.63239 -12.35575 -12.13120 -11.89734 -11.86038 -11.52897 -11.44969 -11.40664 -11.27817 -11.15517 -10.93150 -10.90637 -10.60662 -10.39072 -10.37397 -8.05595 -6.11917 1.40188 1.41087 1.48030 2.45864 3.25564 3.82527 3.89395 3.93749 4.14810 4.19652 4.29686 4.54740 4.66803 4.73640 4.80983 4.84818 4.89077 4.91826 5.04688 5.04896 5.07925 5.12368 5.16892 5.21216 5.26492 5.33087 5.34014 5.49329 5.54071 5.54305 5.61040 5.66121 5.73850 5.77465 5.86546 6.01898 6.06373 6.49938 7.00605 7.54949 9.04023 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.009361 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.778618 B = 2990.523486 C = 3811.237694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.078 0.922 9 C 0.037 3.963 10 H -0.019 1.019 11 C -0.085 4.085 12 C -0.128 4.128 13 C -0.102 4.102 14 C -0.080 4.080 15 H 0.048 0.952 16 C -0.077 4.077 17 C -0.093 4.093 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.124 4.124 22 H 0.255 0.745 23 H 0.026 0.974 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.585 -10.745 2.861 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.562 4.562 8 H 0.096 0.904 9 C 0.019 3.981 10 H 0.000 1.000 11 C -0.124 4.124 12 C -0.165 4.165 13 C -0.139 4.139 14 C -0.098 4.098 15 H 0.066 0.934 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.444 -10.616 2.851 15.162 hybrid contribution -0.293 1.545 -0.292 1.600 sum 10.151 -9.071 2.559 13.852 Atomic orbital electron populations 1.70140 1.07346 1.26678 1.52572 1.25819 0.95520 1.02348 0.95669 0.85822 0.78478 0.79820 0.78841 1.19672 1.21581 1.19572 1.22064 0.94197 0.91346 1.48554 0.90431 1.19312 0.92829 0.93343 0.92651 1.00037 1.22052 0.98018 0.94194 0.98104 1.22604 0.97706 0.96039 1.00178 1.22533 0.95227 0.99134 0.97005 1.21696 0.95415 0.95755 0.96967 0.93372 1.21608 0.93467 0.96034 1.00363 1.21880 0.94582 0.96316 0.98408 1.22640 0.96928 0.99055 0.97007 1.22520 0.94605 0.97426 1.01366 1.22346 0.98836 0.97481 0.97317 1.22233 0.94930 1.00008 0.98983 0.93643 0.95461 0.95952 0.91606 0.92268 0.91535 0.90592 0.93771 0.93563 0.91752 0.91940 0.91161 0.90962 0.90986 0.90775 0.92358 0.91522 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 12.32 21.45 0.26 -55.83 16 2 C 0.00 0.22 5.32 84.66 0.45 0.67 16 3 Si 0.94 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.52 -28.90 7.52 25.60 0.19 -28.71 16 8 H 0.08 4.09 4.65 -2.91 -0.01 4.08 16 9 C 0.04 1.90 2.84 -10.82 -0.03 1.87 16 10 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 11 C -0.09 -4.19 5.37 31.67 0.17 -4.02 16 12 C -0.13 -4.78 6.91 31.88 0.22 -4.56 16 13 C -0.10 -3.46 4.61 31.67 0.15 -3.32 16 14 C -0.08 -3.21 2.92 -10.07 -0.03 -3.24 16 15 H 0.05 1.88 8.12 -2.39 -0.02 1.86 16 16 C -0.08 -2.91 2.44 30.59 0.07 -2.83 16 17 C -0.09 -2.70 2.91 -10.07 -0.03 -2.73 16 18 C -0.12 -2.96 4.60 31.67 0.15 -2.81 16 19 C -0.12 -2.48 6.91 31.89 0.22 -2.26 16 20 C -0.12 -2.66 6.83 31.67 0.22 -2.44 16 21 C -0.12 -3.22 6.46 31.32 0.20 -3.02 16 22 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 23 H 0.03 1.41 7.85 -2.39 -0.02 1.39 16 24 H 0.02 1.18 7.92 -2.39 -0.02 1.16 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 2.22 5.78 -2.39 -0.01 2.20 16 28 H 0.08 2.15 7.00 -2.39 -0.02 2.13 16 29 H 0.04 1.85 6.62 -2.39 -0.02 1.84 16 30 H 0.05 1.86 7.18 -2.39 -0.02 1.85 16 31 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 32 H 0.06 1.69 5.81 -2.39 -0.01 1.68 16 33 H 0.07 1.62 6.99 -2.39 -0.02 1.60 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.44 7.67 -2.39 -0.02 1.42 16 Total: -1.00 -61.11 285.96 5.23 -55.88 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.99 Total: 10.48 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 1.95 Total: -57.39 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.26 Total: -55.83 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -61.11 5.23 -55.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.202 kcal (2) G-P(sol) polarization free energy of solvation -61.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds