Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43053 * 61.08406 * 9 7 2 11 11 C 1.54887 * 110.48465 * 298.54974 * 9 7 2 12 12 C 1.54883 * 102.74816 * 203.37809 * 11 9 7 13 13 C 1.54268 * 104.19781 * 37.93884 * 12 11 9 14 14 C 1.53875 * 106.59885 * 336.39254 * 13 12 11 15 15 H 1.08998 * 110.03135 * 119.28179 * 14 13 12 16 16 C 1.52995 * 110.03294 * 240.71677 * 14 13 12 17 17 C 1.53000 * 109.46932 * 292.16440 * 16 14 13 18 18 C 1.54268 * 110.03400 * 292.16416 * 17 16 14 19 19 C 1.54882 * 104.19904 * 217.10516 * 18 17 16 20 20 C 1.54893 * 102.74760 * 37.94367 * 19 18 17 21 21 C 1.53880 * 110.03210 * 175.00222 * 17 16 14 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09003 * 110.75651 * 321.68952 * 11 9 7 24 24 H 1.08998 * 110.75998 * 84.87451 * 11 9 7 25 25 H 1.09000 * 110.48985 * 156.61843 * 12 11 9 26 26 H 1.09000 * 110.49072 * 279.26132 * 12 11 9 27 27 H 1.09002 * 110.03200 * 95.67509 * 13 12 11 28 28 H 1.09005 * 110.03695 * 217.05859 * 13 12 11 29 29 H 1.08996 * 109.47419 * 52.16384 * 16 14 13 30 30 H 1.08996 * 109.47250 * 172.16424 * 16 14 13 31 31 H 1.08995 * 110.02044 * 53.61127 * 17 16 14 32 32 H 1.09000 * 110.48248 * 335.79003 * 18 17 16 33 33 H 1.09000 * 110.48320 * 98.42744 * 18 17 16 34 34 H 1.08998 * 110.76147 * 279.63160 * 19 18 17 35 35 H 1.09001 * 110.75720 * 156.25866 * 19 18 17 36 36 H 1.09002 * 110.48626 * 203.37252 * 20 19 18 37 37 H 1.09001 * 110.59519 * 80.79234 * 20 19 18 38 38 H 1.09004 * 110.03025 * 238.56976 * 21 17 16 39 39 H 1.08999 * 110.03183 * 359.94953 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6335 -2.5820 -0.8938 11 6 0.3791 -2.6216 1.2747 12 6 0.1942 -4.1528 1.4164 13 6 1.5579 -4.7391 0.9965 14 6 2.2299 -3.6877 0.0962 15 1 3.1704 -3.3620 0.5406 16 6 2.4816 -4.2726 -1.2949 17 6 3.5467 -5.3671 -1.2029 18 6 4.9125 -4.7465 -0.8435 19 6 5.9336 -5.5762 -1.6607 20 6 5.1858 -5.8204 -2.9950 21 6 3.7205 -6.0499 -2.5709 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9008 -2.2138 2.1406 24 1 -0.5811 -2.1250 1.1350 25 1 -0.0322 -4.4158 2.4497 26 1 -0.5938 -4.5052 0.7508 27 1 2.1723 -4.9237 1.8777 28 1 1.4111 -5.6667 0.4430 29 1 1.5562 -4.6980 -1.6831 30 1 2.8275 -3.4843 -1.9634 31 1 3.2611 -6.1035 -0.4517 32 1 4.9459 -3.6988 -1.1423 33 1 5.1076 -4.8461 0.2243 34 1 6.1517 -6.5205 -1.1618 35 1 6.8477 -5.0068 -1.8289 36 1 5.5804 -6.7035 -3.4974 37 1 5.2631 -4.9475 -3.6432 38 1 3.5200 -7.1178 -2.4834 39 1 3.0454 -5.6021 -3.3001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -52.969424 kcal Electronic energy + Delta-G solvation = -15862.340507 eV Core-core repulsion = 13574.356337 eV Total energy + Delta-G solvation = -2287.984171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.73060 -36.93010 -32.74474 -31.33351 -28.54559 -27.90603 -26.99449 -24.26824 -22.77527 -20.59524 -19.90952 -19.04540 -18.34958 -16.86597 -15.78249 -14.75103 -14.63166 -13.71668 -13.65835 -13.33778 -13.14528 -12.65617 -12.02053 -11.94810 -11.56476 -11.24663 -10.96100 -10.86858 -10.82376 -10.59575 -10.51929 -10.32528 -10.21752 -10.11973 -9.97762 -9.64332 -9.56421 -9.48341 -9.05715 -8.33503 -8.23627 -6.21811 -3.93982 3.47586 3.49040 3.67633 4.60120 4.79642 4.86289 4.95405 5.42519 5.49658 5.57186 5.61700 5.67085 5.73464 5.76804 5.81040 5.89466 5.93529 6.02856 6.10744 6.23183 6.27163 6.38103 6.43859 6.45714 6.50183 6.56992 6.59937 6.66378 6.76758 6.88668 7.01142 7.03213 7.26276 7.28844 7.47529 7.82017 8.38491 8.55183 9.01000 9.77396 11.14797 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.025802 B = 0.008314 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.916934 B = 3367.124435 C = 4092.457822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.018 3.982 3 Si 1.063 2.937 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.588 4.588 8 H 0.046 0.954 9 C 0.038 3.962 10 H 0.018 0.982 11 C -0.117 4.117 12 C -0.128 4.128 13 C -0.117 4.117 14 C -0.079 4.079 15 H 0.063 0.937 16 C -0.097 4.097 17 C -0.092 4.092 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.273 0.727 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 -11.066 -2.186 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.892 3.108 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.627 4.627 8 H 0.065 0.935 9 C 0.020 3.980 10 H 0.036 0.964 11 C -0.155 4.155 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.097 4.097 15 H 0.082 0.918 16 C -0.134 4.134 17 C -0.110 4.110 18 C -0.155 4.155 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.160 4.160 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.953 -9.417 -2.192 11.909 hybrid contribution 0.184 -1.696 0.059 1.707 sum 7.137 -11.114 -2.133 13.379 Atomic orbital electron populations 1.70797 1.06863 1.31098 1.46811 1.25707 0.96597 1.02338 0.93939 0.83632 0.74956 0.75818 0.76395 1.20917 1.21616 1.21611 1.22022 0.93840 0.91606 1.55198 0.93534 1.19636 0.92670 0.92931 0.92759 0.96374 1.22695 1.00289 0.91893 1.00612 1.22416 0.96641 0.98602 0.98910 1.22220 0.96539 0.97984 0.98692 1.21781 0.99537 0.95097 0.93306 0.91823 1.21726 0.96843 0.96585 0.98296 1.21836 0.95666 0.97458 0.96058 1.22433 0.93943 0.99815 0.99335 1.22504 0.98020 0.99711 0.96100 1.22341 0.95576 1.00895 0.97326 1.22238 0.96438 0.99800 0.97475 0.91476 0.92833 0.92638 0.93617 0.93076 0.93407 0.93218 0.93171 0.91895 0.91588 0.91058 0.92119 0.92073 0.92074 0.92426 0.91781 0.92587 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.81 13.41 55.43 0.74 -27.07 16 2 C 0.02 0.52 5.33 -17.82 -0.09 0.42 16 3 Si 1.06 25.50 29.90 -169.99 -5.08 20.42 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.59 -16.49 8.49 -34.44 -0.29 -16.79 16 8 H 0.05 1.30 7.58 -52.48 -0.40 0.90 16 9 C 0.04 0.96 1.97 -90.11 -0.18 0.78 16 10 H 0.02 0.49 7.78 -51.93 -0.40 0.09 16 11 C -0.12 -2.76 5.55 -24.74 -0.14 -2.89 16 12 C -0.13 -2.47 6.83 -25.07 -0.17 -2.64 16 13 C -0.12 -2.13 5.88 -25.61 -0.15 -2.28 16 14 C -0.08 -1.62 2.41 -89.50 -0.22 -1.83 16 15 H 0.06 1.38 6.91 -51.93 -0.36 1.02 16 16 C -0.10 -1.76 3.47 -26.73 -0.09 -1.85 16 17 C -0.09 -1.37 2.81 -89.50 -0.25 -1.62 16 18 C -0.12 -1.71 5.46 -25.07 -0.14 -1.85 16 19 C -0.13 -1.52 6.91 -24.74 -0.17 -1.69 16 20 C -0.12 -1.47 6.83 -25.07 -0.17 -1.65 16 21 C -0.12 -1.59 6.46 -25.61 -0.17 -1.75 16 22 H 0.27 8.16 5.24 -40.82 -0.21 7.94 16 23 H 0.05 1.33 8.05 -51.93 -0.42 0.91 16 24 H 0.05 1.39 6.30 -51.93 -0.33 1.06 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.82 6.92 -51.93 -0.36 0.46 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.24 8.00 -51.93 -0.42 0.83 16 31 H 0.07 0.97 6.92 -51.93 -0.36 0.61 16 32 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -29.07 293.55 -9.22 -38.29 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.08 Total: -0.43 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: -2.23 Total: -35.64 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.74 Total: -27.07 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.07 -9.22 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.677 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds