Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30374 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47237 * 274.97862 * 3 2 1 5 5 H 1.48503 * 109.47214 * 34.98176 * 3 2 1 6 6 H 1.48507 * 109.47047 * 154.97797 * 3 2 1 7 7 C 1.40761 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00160 * 174.00945 * 7 2 1 9 9 C 1.39532 * 119.99773 * 354.29170 * 7 2 1 10 10 O 1.34882 * 127.37693 * 5.00528 * 9 7 2 11 11 N 1.20710 * 111.78754 * 179.78673 * 10 9 7 12 12 C 1.30105 * 113.21190 * 0.50740 * 11 10 9 13 13 C 1.50703 * 126.66588 * 179.66194 * 12 11 10 14 14 C 1.53004 * 117.49819 * 8.65664 * 13 12 11 15 15 C 1.53005 * 117.49589 * 300.03404 * 13 12 11 16 16 C 1.41694 * 127.37283 * 185.31935 * 9 7 2 17 17 C 1.47020 * 128.45903 * 0.02562 * 16 9 7 18 18 O 1.21565 * 119.99659 * 89.97325 * 17 16 9 19 19 O 1.34847 * 120.00113 * 269.97473 * 17 16 9 20 20 H 0.97008 * 119.99968 * 0.02562 * 1 2 3 21 21 H 1.08996 * 115.54941 * 154.36838 * 13 12 11 22 22 H 1.08994 * 117.49986 * 0.02562 * 14 13 12 23 23 H 1.09003 * 117.49653 * 145.02565 * 14 13 12 24 24 H 1.08991 * 117.50220 * 214.98165 * 15 13 12 25 25 H 1.09005 * 117.49691 * 359.97438 * 15 13 12 26 26 H 0.96699 * 116.99658 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3037 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 2.3800 2.1072 -1.3948 5 1 1.4917 2.6200 0.8027 6 1 3.5840 1.4121 0.5922 7 6 2.0076 -1.2190 0.0005 8 1 3.0832 -1.2216 -0.0971 9 6 1.3151 -2.4243 0.1213 10 8 -0.0218 -2.6011 0.1519 11 7 -0.3173 -3.7664 0.2605 12 6 0.7166 -4.5532 0.3310 13 6 0.6978 -6.0530 0.4771 14 6 -0.6538 -6.7584 0.3485 15 6 0.0167 -6.6333 1.7182 16 6 1.8658 -3.7241 0.2441 17 6 3.2819 -4.1180 0.2747 18 8 3.8730 -4.1791 1.3352 19 8 3.9250 -4.4116 -0.8736 20 1 -0.4850 0.8401 -0.0004 21 1 1.5759 -6.5735 0.0951 22 1 -1.5293 -6.1378 0.1579 23 1 -0.6651 -7.7434 -0.1182 24 1 0.4465 -7.5359 2.1524 25 1 -0.4174 -5.9303 2.4292 26 1 4.8555 -4.6651 -0.8031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989866.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = -33.523854 kcal Electronic energy + Delta-G solvation = -14934.972959 eV Core-core repulsion = 12174.906817 eV Total energy + Delta-G solvation = -2760.066142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.68444 -38.91751 -36.80866 -35.10109 -34.30676 -31.76978 -30.33446 -26.35900 -23.95151 -23.09623 -21.96407 -20.04885 -19.73656 -17.51593 -17.06340 -16.07751 -15.59676 -15.46609 -15.21096 -14.32114 -14.22310 -13.47650 -12.89904 -12.40079 -11.68794 -11.57227 -11.51327 -11.21557 -11.14783 -10.73026 -10.62151 -10.50836 -10.12016 -9.89284 -9.81044 -9.31633 -8.38085 -8.13516 -7.25472 -5.04594 2.66468 2.88048 2.94572 3.11034 3.27864 3.29636 3.63450 4.13111 4.47928 4.77123 4.97385 5.28836 5.32541 5.45148 5.62492 5.98096 6.15646 6.42198 6.55713 6.60087 6.65079 6.77825 6.85117 7.24845 7.47143 7.76339 8.04273 8.24195 8.84783 9.70872 10.16711 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.009899 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.117469 B = 2827.841902 C = 3505.171759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.069 3.931 3 Si 0.931 3.069 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.108 0.892 9 C 0.206 3.794 10 O 0.072 5.928 11 N -0.432 5.432 12 C 0.104 3.896 13 C -0.073 4.073 14 C -0.168 4.168 15 C -0.167 4.167 16 C -0.433 4.433 17 C 0.600 3.400 18 O -0.532 6.532 19 O -0.519 6.519 20 H 0.296 0.704 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -3.444 -1.119 4.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.157 4.157 3 Si 0.753 3.247 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.442 4.442 8 H 0.126 0.874 9 C 0.146 3.854 10 O 0.025 5.975 11 N -0.153 5.153 12 C -0.056 4.056 13 C -0.092 4.092 14 C -0.205 4.205 15 C -0.205 4.205 16 C -0.444 4.444 17 C 0.445 3.555 18 O -0.421 6.421 19 O -0.329 6.329 20 H 0.108 0.892 21 H 0.128 0.872 22 H 0.120 0.880 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.637 -3.326 -0.847 3.491 hybrid contribution 1.888 0.498 -0.006 1.953 sum 2.525 -2.829 -0.853 3.887 Atomic orbital electron populations 1.69552 1.07977 1.31322 1.28099 1.26336 0.95132 1.02541 0.91741 0.85884 0.80549 0.78529 0.79703 1.18665 1.19313 1.17750 1.18938 0.95389 0.87385 1.42508 0.87447 1.20992 0.82104 0.92528 0.89733 1.85060 1.21806 1.18552 1.72130 1.73038 1.24206 0.90700 1.27323 1.21447 0.88634 0.93851 1.01681 1.20102 0.96934 0.88796 1.03351 1.22924 0.96538 1.01160 0.99914 1.22939 1.03924 1.02350 0.91291 1.19008 0.89331 0.93753 1.42351 1.19721 0.85980 0.69988 0.79809 1.90760 1.68905 1.50117 1.32312 1.84871 1.29302 1.80588 1.38089 0.89242 0.87245 0.88026 0.88962 0.88832 0.88690 0.75348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.39 12.11 55.59 0.67 -17.72 15 2 C 0.07 1.63 5.50 -17.22 -0.09 1.53 15 3 Si 0.93 17.19 29.57 -169.99 -5.03 12.16 15 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 6 H -0.25 -4.68 7.11 56.52 0.40 -4.28 15 7 C -0.41 -10.66 9.27 -38.15 -0.35 -11.01 15 8 H 0.11 2.64 7.87 -52.49 -0.41 2.22 15 9 C 0.21 5.67 6.96 -37.78 -0.26 5.40 15 10 O 0.07 2.04 9.65 14.92 0.14 2.18 15 11 N -0.43 -11.46 11.60 33.91 0.39 -11.06 15 12 C 0.10 2.57 6.85 -81.89 -0.56 2.00 15 13 C -0.07 -1.44 6.21 -91.77 -0.57 -2.01 15 14 C -0.17 -2.80 10.15 -26.72 -0.27 -3.07 15 15 C -0.17 -2.83 10.23 -26.72 -0.27 -3.10 15 16 C -0.43 -11.33 6.30 -103.59 -0.65 -11.98 15 17 C 0.60 14.22 8.07 34.29 0.28 14.50 15 18 O -0.53 -13.36 17.90 -19.31 -0.35 -13.71 15 19 O -0.52 -10.03 13.44 -40.90 -0.55 -10.58 15 20 H 0.30 6.40 8.29 -40.82 -0.34 6.06 15 21 H 0.11 2.00 8.14 -51.93 -0.42 1.58 15 22 H 0.10 1.83 7.93 -51.93 -0.41 1.42 15 23 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 26 H 0.39 5.17 9.11 45.56 0.42 5.59 15 LS Contribution 250.88 15.07 3.78 3.78 Total: -1.00 -30.81 250.88 -4.93 -35.74 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -1.23 Total: 6.95 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.76 Total: -7.75 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 1.07 Total: -28.78 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.75 Total: -22.11 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.81 -4.93 -35.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989866.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.214 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds