Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30374 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47237 * 274.97862 * 3 2 1 5 5 H 1.48503 * 109.47214 * 34.98176 * 3 2 1 6 6 H 1.48507 * 109.47047 * 154.97797 * 3 2 1 7 7 C 1.40761 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00160 * 174.00945 * 7 2 1 9 9 C 1.39532 * 119.99773 * 354.29170 * 7 2 1 10 10 O 1.34882 * 127.37693 * 5.00528 * 9 7 2 11 11 N 1.20710 * 111.78754 * 179.78673 * 10 9 7 12 12 C 1.30105 * 113.21190 * 0.50740 * 11 10 9 13 13 C 1.50703 * 126.66588 * 179.66194 * 12 11 10 14 14 C 1.53004 * 117.49819 * 8.65664 * 13 12 11 15 15 C 1.53005 * 117.49589 * 300.03404 * 13 12 11 16 16 C 1.41694 * 127.37283 * 185.31935 * 9 7 2 17 17 C 1.47020 * 128.45903 * 0.02562 * 16 9 7 18 18 O 1.21565 * 119.99659 * 89.97325 * 17 16 9 19 19 O 1.34847 * 120.00113 * 269.97473 * 17 16 9 20 20 H 0.97008 * 119.99968 * 0.02562 * 1 2 3 21 21 H 1.08996 * 115.54941 * 154.36838 * 13 12 11 22 22 H 1.08994 * 117.49986 * 0.02562 * 14 13 12 23 23 H 1.09003 * 117.49653 * 145.02565 * 14 13 12 24 24 H 1.08991 * 117.50220 * 214.98165 * 15 13 12 25 25 H 1.09005 * 117.49691 * 359.97438 * 15 13 12 26 26 H 0.96699 * 116.99658 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3037 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 2.3800 2.1072 -1.3948 5 1 1.4917 2.6200 0.8027 6 1 3.5840 1.4121 0.5922 7 6 2.0076 -1.2190 0.0005 8 1 3.0832 -1.2216 -0.0971 9 6 1.3151 -2.4243 0.1213 10 8 -0.0218 -2.6011 0.1519 11 7 -0.3173 -3.7664 0.2605 12 6 0.7166 -4.5532 0.3310 13 6 0.6978 -6.0530 0.4771 14 6 -0.6538 -6.7584 0.3485 15 6 0.0167 -6.6333 1.7182 16 6 1.8658 -3.7241 0.2441 17 6 3.2819 -4.1180 0.2747 18 8 3.8730 -4.1791 1.3352 19 8 3.9250 -4.4116 -0.8736 20 1 -0.4850 0.8401 -0.0004 21 1 1.5759 -6.5735 0.0951 22 1 -1.5293 -6.1378 0.1579 23 1 -0.6651 -7.7434 -0.1182 24 1 0.4465 -7.5359 2.1524 25 1 -0.4174 -5.9303 2.4292 26 1 4.8555 -4.6651 -0.8031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989866.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = -54.341719 kcal Electronic energy + Delta-G solvation = -14935.875689 eV Core-core repulsion = 12174.906817 eV Total energy + Delta-G solvation = -2760.968873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.62189 -40.71210 -38.28019 -36.83944 -36.17965 -33.64658 -32.26730 -28.29348 -25.77392 -24.81717 -23.29199 -21.88149 -21.54752 -19.29166 -18.85480 -17.92720 -17.55055 -17.21624 -16.86031 -16.00166 -15.81012 -15.13438 -14.54423 -14.14352 -13.54094 -13.30993 -13.13477 -12.79571 -12.45359 -12.43272 -12.21889 -12.01169 -11.85085 -11.58010 -11.52729 -11.10010 -10.20180 -10.10314 -9.05422 -7.03243 0.94676 1.25461 1.35206 1.47451 1.54720 1.65840 2.09220 2.43182 2.85930 3.01668 3.20683 3.61833 3.80923 3.99780 4.16543 4.71249 4.73674 4.78740 4.82586 4.91248 4.97329 5.15981 5.25199 5.60664 5.64921 5.81122 6.10223 6.31362 7.19473 7.94468 8.17420 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.009899 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.117469 B = 2827.841902 C = 3505.171759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.028 3.972 3 Si 1.012 2.988 4 H -0.248 1.248 5 H -0.256 1.256 6 H -0.252 1.252 7 C -0.433 4.433 8 H 0.114 0.886 9 C 0.173 3.827 10 O 0.040 5.960 11 N -0.458 5.458 12 C 0.108 3.892 13 C -0.108 4.108 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.467 4.467 17 C 0.610 3.390 18 O -0.553 6.553 19 O -0.507 6.507 20 H 0.310 0.690 21 H 0.126 0.874 22 H 0.082 0.918 23 H 0.133 0.867 24 H 0.132 0.868 25 H 0.075 0.925 26 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 -3.668 -1.350 5.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.195 4.195 3 Si 0.828 3.172 4 H -0.172 1.172 5 H -0.180 1.180 6 H -0.176 1.176 7 C -0.461 4.461 8 H 0.131 0.869 9 C 0.114 3.886 10 O -0.003 6.003 11 N -0.183 5.183 12 C -0.051 4.051 13 C -0.127 4.127 14 C -0.184 4.184 15 C -0.190 4.190 16 C -0.478 4.478 17 C 0.455 3.545 18 O -0.445 6.445 19 O -0.320 6.320 20 H 0.122 0.878 21 H 0.143 0.857 22 H 0.100 0.900 23 H 0.151 0.849 24 H 0.150 0.850 25 H 0.093 0.907 26 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 1.667 -3.555 -1.103 4.078 hybrid contribution 1.570 0.522 0.031 1.655 sum 3.237 -3.033 -1.071 4.564 Atomic orbital electron populations 1.69596 1.09758 1.33334 1.27533 1.27436 0.95898 1.05838 0.90378 0.84741 0.78812 0.73149 0.80481 1.17177 1.17959 1.17567 1.19387 0.95912 0.88191 1.42657 0.86857 1.21572 0.82334 0.93973 0.90737 1.84990 1.22342 1.19504 1.73508 1.72985 1.25135 0.90579 1.29601 1.22206 0.87704 0.96184 0.99045 1.20348 0.99494 0.86065 1.06774 1.23010 0.93770 1.02009 0.99605 1.23040 1.02659 1.02743 0.90606 1.19504 0.91217 0.93836 1.43279 1.19314 0.85311 0.69652 0.80261 1.90739 1.69161 1.51328 1.33236 1.84766 1.31591 1.79832 1.35797 0.87847 0.85660 0.89959 0.84888 0.85038 0.90675 0.71932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.95 12.11 21.97 0.27 -38.69 15 2 C 0.03 1.32 5.50 85.53 0.47 1.79 15 3 Si 1.01 34.26 29.57 68.60 2.03 36.29 15 4 H -0.25 -7.82 7.11 99.48 0.71 -7.12 15 5 H -0.26 -8.09 7.11 99.48 0.71 -7.38 15 6 H -0.25 -8.41 7.11 99.48 0.71 -7.71 15 7 C -0.43 -22.80 9.27 23.20 0.21 -22.58 15 8 H 0.11 5.62 7.87 -2.91 -0.02 5.60 15 9 C 0.17 9.85 6.96 23.44 0.16 10.01 15 10 O 0.04 2.35 9.65 63.61 0.61 2.97 15 11 N -0.46 -25.19 11.60 -46.85 -0.54 -25.73 15 12 C 0.11 5.48 6.85 43.74 0.30 5.78 15 13 C -0.11 -4.16 6.21 -11.54 -0.07 -4.23 15 14 C -0.15 -4.59 10.15 30.60 0.31 -4.28 15 15 C -0.15 -4.88 10.23 30.60 0.31 -4.57 15 16 C -0.47 -24.99 6.30 -19.20 -0.12 -25.11 15 17 C 0.61 28.73 8.07 70.12 0.57 29.29 15 18 O -0.55 -27.63 17.90 19.62 0.35 -27.28 15 19 O -0.51 -18.87 13.44 -57.60 -0.77 -19.65 15 20 H 0.31 13.40 8.29 -92.70 -0.77 12.64 15 21 H 0.13 4.36 8.14 -2.39 -0.02 4.34 15 22 H 0.08 2.91 7.93 -2.39 -0.02 2.90 15 23 H 0.13 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.13 3.20 8.14 -2.39 -0.02 3.18 15 25 H 0.07 2.70 8.14 -2.38 -0.02 2.68 15 26 H 0.42 10.08 9.11 -74.06 -0.67 9.41 15 Total: -1.00 -69.04 250.88 4.64 -64.40 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.56 Total: 21.59 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 2.14 Total: -13.90 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.28 Total: -64.42 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: 0.19 Total: -43.96 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Total: -69.04 4.64 -64.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989866.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.057 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds