Wall clock time and date at job start Mon Mar 30 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47397 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47102 * 120.00190 * 3 2 1 7 7 C 1.37879 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99734 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.05284 * 306.86778 * 9 7 2 11 11 C 1.54261 * 110.03554 * 68.28857 * 9 7 2 12 12 C 1.54894 * 104.19528 * 142.89356 * 11 9 7 13 13 C 1.54886 * 102.74876 * 322.05871 * 12 11 9 14 14 C 1.53872 * 110.03024 * 185.45653 * 9 7 2 15 15 H 1.09006 * 110.07551 * 121.40417 * 14 9 7 16 16 C 1.52999 * 110.03173 * 0.02562 * 14 9 7 17 17 C 1.53006 * 109.46916 * 190.17349 * 16 14 9 18 18 C 1.53002 * 109.46846 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47215 * 60.00223 * 18 17 16 20 20 C 1.53000 * 109.46786 * 299.99837 * 19 18 17 21 21 C 1.52993 * 109.47691 * 70.17124 * 16 14 9 22 22 H 0.97003 * 119.99811 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.48450 * 24.21611 * 11 9 7 24 24 H 1.08999 * 110.48938 * 261.57104 * 11 9 7 25 25 H 1.09000 * 110.75381 * 203.74291 * 12 11 9 26 26 H 1.09004 * 110.75274 * 80.37177 * 12 11 9 27 27 H 1.09003 * 110.48767 * 156.61951 * 13 12 11 28 28 H 1.08996 * 110.48628 * 279.13386 * 13 12 11 29 29 H 1.09001 * 109.47039 * 310.16705 * 16 14 9 30 30 H 1.08993 * 109.47295 * 299.99260 * 17 16 14 31 31 H 1.09001 * 109.46968 * 59.99840 * 17 16 14 32 32 H 1.09001 * 109.47370 * 299.99516 * 18 17 16 33 33 H 1.09004 * 109.47180 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47060 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46973 * 60.00091 * 19 18 17 36 36 H 1.09003 * 109.47017 * 299.99609 * 20 19 18 37 37 H 1.09004 * 109.47046 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47342 * 300.00263 * 21 16 14 39 39 H 1.09005 * 109.46789 * 60.00292 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5318 -2.5162 0.8172 11 6 0.5230 -2.6878 -1.3485 12 6 0.6414 -4.2054 -1.6350 13 6 2.0685 -4.5377 -1.1330 14 6 2.2337 -3.6752 0.1354 15 1 1.9922 -4.2633 1.0208 16 6 3.6680 -3.1514 0.2305 17 6 4.6471 -4.3210 0.1110 18 6 6.0815 -3.7971 0.2056 19 6 6.2820 -3.0998 1.5526 20 6 5.3029 -1.9302 1.6720 21 6 3.8682 -2.4543 1.5777 22 1 -0.4850 0.8401 0.0004 23 1 1.0153 -2.1121 -2.1322 24 1 -0.5238 -2.3968 -1.2605 25 1 0.5513 -4.4051 -2.7028 26 1 -0.1060 -4.7643 -1.0718 27 1 2.1497 -5.5966 -0.8876 28 1 2.8103 -4.2628 -1.8828 29 1 3.8499 -2.4415 -0.5764 30 1 4.4654 -5.0309 0.9179 31 1 4.5046 -4.8176 -0.8488 32 1 6.2631 -3.0874 -0.6016 33 1 6.7791 -4.6303 0.1200 34 1 7.3041 -2.7269 1.6201 35 1 6.1006 -3.8095 2.3596 36 1 5.4845 -1.2204 0.8649 37 1 5.4460 -1.4330 2.6315 38 1 3.1707 -1.6211 1.6629 39 1 3.6864 -3.1643 2.3846 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:43 Heat of formation + Delta-G solvation = -35.619846 kcal Electronic energy + Delta-G solvation = -16463.791617 eV Core-core repulsion = 14176.559780 eV Total energy + Delta-G solvation = -2287.231837 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98891 -36.15925 -32.47423 -31.02576 -30.25834 -27.86175 -26.13323 -23.96139 -22.03279 -21.44971 -19.29021 -19.24844 -18.38909 -16.13432 -14.85615 -14.54208 -14.29302 -13.74121 -13.54044 -13.48297 -12.73929 -12.25259 -12.22871 -11.80063 -11.57094 -11.41241 -10.88936 -10.69352 -10.55308 -10.53776 -10.37319 -10.02059 -9.95737 -9.81650 -9.59753 -9.47646 -9.40377 -9.08499 -8.78690 -8.27228 -8.24633 -5.91773 -3.89144 3.35347 3.40632 3.43039 4.50700 5.21451 5.30880 5.32831 5.39885 5.70768 5.74159 5.83633 5.91731 5.98366 6.07394 6.09909 6.14189 6.27149 6.27740 6.44242 6.51343 6.53594 6.61160 6.65330 6.72968 6.78741 6.83483 6.88636 6.99754 7.11664 7.16355 7.33069 7.39741 7.53796 7.58049 7.81995 8.00004 8.13584 8.59774 9.11839 9.71055 11.18697 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.013398 C = 0.008859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.723946 B = 2089.365960 C = 3159.967196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.081 0.919 9 C 0.049 3.951 10 H 0.027 0.973 11 C -0.096 4.096 12 C -0.133 4.133 13 C -0.113 4.113 14 C -0.079 4.079 15 H 0.044 0.956 16 C -0.063 4.063 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.127 4.127 22 H 0.257 0.743 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -6.652 0.438 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.099 0.901 9 C 0.031 3.969 10 H 0.045 0.955 11 C -0.134 4.134 12 C -0.171 4.171 13 C -0.150 4.150 14 C -0.098 4.098 15 H 0.062 0.938 16 C -0.081 4.081 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.164 4.164 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.604 -6.522 0.447 10.027 hybrid contribution 0.413 0.944 -0.019 1.031 sum 8.017 -5.578 0.428 9.776 Atomic orbital electron populations 1.69980 1.05908 1.26193 1.50967 1.25022 0.94669 0.98761 0.95657 0.86881 0.79781 0.84116 0.78611 1.20422 1.21616 1.20220 1.21768 0.94041 0.90126 1.49339 0.90085 1.19243 0.92584 0.91708 0.93364 0.95471 1.22326 1.00269 0.90917 0.99885 1.22611 0.96378 0.99695 0.98409 1.22375 0.96876 0.97569 0.98219 1.21819 0.95745 0.97015 0.95209 0.93792 1.21121 0.93336 0.95255 0.98390 1.21746 0.94489 0.98776 1.00673 1.21514 0.97195 0.99238 0.97497 1.21529 0.98389 0.98045 0.97427 1.21546 0.96315 0.97053 1.00728 1.22053 0.96009 1.02054 0.96256 0.93328 0.93173 0.93172 0.93795 0.93185 0.94001 0.92454 0.90059 0.93175 0.92655 0.92386 0.93314 0.93306 0.92708 0.92437 0.93139 0.87275 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.84 55.43 0.71 -24.81 16 2 C 0.06 1.62 5.36 -17.82 -0.10 1.53 16 3 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.21 5.54 -34.44 -0.19 -13.40 16 8 H 0.08 1.99 3.74 -52.49 -0.20 1.80 16 9 C 0.05 1.19 2.64 -90.66 -0.24 0.96 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.10 -2.23 5.74 -25.07 -0.14 -2.37 16 12 C -0.13 -2.56 6.91 -24.74 -0.17 -2.73 16 13 C -0.11 -2.06 5.17 -25.07 -0.13 -2.19 16 14 C -0.08 -1.60 2.52 -89.50 -0.23 -1.82 16 15 H 0.04 0.88 8.13 -51.93 -0.42 0.46 16 16 C -0.06 -1.18 1.15 -90.62 -0.10 -1.28 16 17 C -0.12 -1.89 4.85 -26.73 -0.13 -2.02 16 18 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 19 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 20 C -0.12 -1.96 5.92 -26.71 -0.16 -2.12 16 21 C -0.13 -2.39 4.35 -26.71 -0.12 -2.50 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 24 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.03 7.18 -51.93 -0.37 0.66 16 29 H 0.08 1.70 6.25 -51.93 -0.32 1.38 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.85 6.63 -51.93 -0.34 0.50 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.11 2.41 5.26 -51.93 -0.27 2.13 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 284.89 15.07 4.29 4.29 Total: -1.00 -26.57 284.89 -9.01 -35.58 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.97 Total: 0.55 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -2.02 Total: -31.60 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.71 Total: -24.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.57 -9.01 -35.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.042 kcal (2) G-P(sol) polarization free energy of solvation -26.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds