Wall clock time and date at job start Mon Mar 30 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47397 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47102 * 120.00190 * 3 2 1 7 7 C 1.37879 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99734 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.05284 * 306.86778 * 9 7 2 11 11 C 1.54261 * 110.03554 * 68.28857 * 9 7 2 12 12 C 1.54894 * 104.19528 * 142.89356 * 11 9 7 13 13 C 1.54886 * 102.74876 * 322.05871 * 12 11 9 14 14 C 1.53872 * 110.03024 * 185.45653 * 9 7 2 15 15 H 1.09006 * 110.07551 * 121.40417 * 14 9 7 16 16 C 1.52999 * 110.03173 * 0.02562 * 14 9 7 17 17 C 1.53006 * 109.46916 * 190.17349 * 16 14 9 18 18 C 1.53002 * 109.46846 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47215 * 60.00223 * 18 17 16 20 20 C 1.53000 * 109.46786 * 299.99837 * 19 18 17 21 21 C 1.52993 * 109.47691 * 70.17124 * 16 14 9 22 22 H 0.97003 * 119.99811 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.48450 * 24.21611 * 11 9 7 24 24 H 1.08999 * 110.48938 * 261.57104 * 11 9 7 25 25 H 1.09000 * 110.75381 * 203.74291 * 12 11 9 26 26 H 1.09004 * 110.75274 * 80.37177 * 12 11 9 27 27 H 1.09003 * 110.48767 * 156.61951 * 13 12 11 28 28 H 1.08996 * 110.48628 * 279.13386 * 13 12 11 29 29 H 1.09001 * 109.47039 * 310.16705 * 16 14 9 30 30 H 1.08993 * 109.47295 * 299.99260 * 17 16 14 31 31 H 1.09001 * 109.46968 * 59.99840 * 17 16 14 32 32 H 1.09001 * 109.47370 * 299.99516 * 18 17 16 33 33 H 1.09004 * 109.47180 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47060 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46973 * 60.00091 * 19 18 17 36 36 H 1.09003 * 109.47017 * 299.99609 * 20 19 18 37 37 H 1.09004 * 109.47046 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47342 * 300.00263 * 21 16 14 39 39 H 1.09005 * 109.46789 * 60.00292 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5318 -2.5162 0.8172 11 6 0.5230 -2.6878 -1.3485 12 6 0.6414 -4.2054 -1.6350 13 6 2.0685 -4.5377 -1.1330 14 6 2.2337 -3.6752 0.1354 15 1 1.9922 -4.2633 1.0208 16 6 3.6680 -3.1514 0.2305 17 6 4.6471 -4.3210 0.1110 18 6 6.0815 -3.7971 0.2056 19 6 6.2820 -3.0998 1.5526 20 6 5.3029 -1.9302 1.6720 21 6 3.8682 -2.4543 1.5777 22 1 -0.4850 0.8401 0.0004 23 1 1.0153 -2.1121 -2.1322 24 1 -0.5238 -2.3968 -1.2605 25 1 0.5513 -4.4051 -2.7028 26 1 -0.1060 -4.7643 -1.0718 27 1 2.1497 -5.5966 -0.8876 28 1 2.8103 -4.2628 -1.8828 29 1 3.8499 -2.4415 -0.5764 30 1 4.4654 -5.0309 0.9179 31 1 4.5046 -4.8176 -0.8488 32 1 6.2631 -3.0874 -0.6016 33 1 6.7791 -4.6303 0.1200 34 1 7.3041 -2.7269 1.6201 35 1 6.1006 -3.8095 2.3596 36 1 5.4845 -1.2204 0.8649 37 1 5.4460 -1.4330 2.6315 38 1 3.1707 -1.6211 1.6629 39 1 3.6864 -3.1643 2.3846 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:43 Heat of formation + Delta-G solvation = -47.486661 kcal Electronic energy + Delta-G solvation = -16464.306200 eV Core-core repulsion = 14176.559780 eV Total energy + Delta-G solvation = -2287.746420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52657 -37.66081 -34.47014 -32.48577 -31.65014 -29.65347 -27.67960 -25.91914 -23.38083 -22.85852 -20.94334 -20.63028 -20.17066 -17.94610 -16.69347 -16.14500 -15.89603 -15.38201 -14.88386 -14.78752 -14.24658 -14.11953 -13.73343 -13.37739 -13.16393 -12.91355 -12.71690 -12.41077 -12.16351 -11.84543 -11.74294 -11.65636 -11.48240 -11.42485 -11.36948 -11.11141 -11.09520 -10.56102 -10.44242 -10.34196 -10.10653 -8.01511 -6.01857 1.41884 1.42166 1.48319 2.48746 3.30174 3.93406 4.02263 4.07535 4.21052 4.28304 4.34178 4.55058 4.59639 4.80069 4.82458 4.84331 4.89760 4.97375 4.99647 5.05471 5.07159 5.22770 5.23265 5.27673 5.32362 5.38056 5.42114 5.49053 5.53004 5.57578 5.65525 5.71322 5.84067 5.90194 5.95678 6.06272 6.11811 6.57166 7.07182 7.60461 9.09214 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.013398 C = 0.008859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.723946 B = 2089.365960 C = 3159.967196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.091 0.909 9 C 0.042 3.958 10 H -0.015 1.015 11 C -0.093 4.093 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.078 4.078 15 H 0.045 0.955 16 C -0.058 4.058 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.125 4.125 22 H 0.252 0.748 23 H 0.030 0.970 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.277 -8.416 0.173 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.109 0.891 9 C 0.023 3.977 10 H 0.003 0.997 11 C -0.131 4.131 12 C -0.162 4.162 13 C -0.141 4.141 14 C -0.096 4.096 15 H 0.063 0.937 16 C -0.076 4.076 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.162 4.162 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.141 -8.292 0.182 13.100 hybrid contribution -0.407 1.484 0.107 1.542 sum 9.734 -6.808 0.288 11.882 Atomic orbital electron populations 1.70132 1.07359 1.26411 1.53293 1.25739 0.95309 1.01978 0.96247 0.85981 0.78592 0.80474 0.78953 1.19723 1.22116 1.19381 1.22183 0.94674 0.90752 1.46870 0.89092 1.19253 0.92801 0.93319 0.92316 0.99711 1.22156 0.97927 0.94256 0.98785 1.22550 0.97581 0.95941 1.00118 1.22331 0.96006 0.98860 0.96923 1.21757 0.95606 0.95638 0.96611 0.93661 1.20993 0.93295 0.96125 0.97186 1.21666 0.94473 0.97305 1.01577 1.21522 0.96556 1.00017 0.97239 1.21501 0.98559 0.97045 0.97806 1.21529 0.95339 0.98043 1.00692 1.21914 0.96843 1.00739 0.96739 0.93892 0.95077 0.96139 0.91553 0.92343 0.90875 0.91814 0.92525 0.92321 0.91623 0.92881 0.90693 0.91324 0.91856 0.93543 0.92511 0.91343 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 12.84 21.45 0.28 -55.57 16 2 C 0.00 0.22 5.36 84.65 0.45 0.68 16 3 Si 0.93 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.51 -26.80 5.54 25.60 0.14 -26.66 16 8 H 0.09 4.56 3.74 -2.91 -0.01 4.55 16 9 C 0.04 2.08 2.64 -10.82 -0.03 2.05 16 10 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 11 C -0.09 -4.44 5.74 31.67 0.18 -4.26 16 12 C -0.12 -4.57 6.91 31.89 0.22 -4.35 16 13 C -0.10 -3.50 5.17 31.67 0.16 -3.33 16 14 C -0.08 -3.06 2.52 -10.07 -0.03 -3.09 16 15 H 0.04 1.76 8.13 -2.38 -0.02 1.74 16 16 C -0.06 -2.09 1.15 -10.79 -0.01 -2.10 16 17 C -0.11 -3.17 4.85 30.60 0.15 -3.02 16 18 C -0.12 -2.86 5.92 30.59 0.18 -2.68 16 19 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 20 C -0.12 -3.71 5.92 30.61 0.18 -3.52 16 21 C -0.13 -4.64 4.35 30.61 0.13 -4.50 16 22 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.03 1.56 7.85 -2.39 -0.02 1.54 16 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.08 7.18 -2.39 -0.02 2.07 16 29 H 0.06 2.33 6.25 -2.39 -0.01 2.31 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.73 6.63 -2.39 -0.02 1.71 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 3.09 5.26 -2.39 -0.01 3.07 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -59.36 284.89 5.21 -54.15 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.99 Total: 12.56 kcal Atomic # 6 Polarization: -59.32 SS G_CDS: 1.92 Total: -57.40 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.57 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -59.36 5.21 -54.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.664 kcal (2) G-P(sol) polarization free energy of solvation -59.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds