Wall clock time and date at job start Mon Mar 30 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48504 * 109.46943 * 240.00035 * 3 2 1 5 5 H 1.48502 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47404 * 120.00231 * 3 2 1 7 7 C 1.37874 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00585 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99692 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.05902 * 58.58018 * 9 7 2 11 11 C 1.53877 * 110.03203 * 297.16374 * 9 7 2 12 12 C 1.54263 * 106.59897 * 240.71677 * 11 9 7 13 13 C 1.54888 * 104.19533 * 336.38836 * 12 11 9 14 14 C 1.54268 * 110.03169 * 179.97438 * 9 7 2 15 15 H 1.08999 * 110.59507 * 24.16283 * 14 9 7 16 16 C 1.52996 * 110.48688 * 261.56960 * 14 9 7 17 17 C 1.53002 * 109.46891 * 63.77534 * 16 14 9 18 18 C 1.52996 * 109.46891 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47328 * 299.99597 * 18 17 16 20 20 C 1.52997 * 109.47060 * 60.00126 * 19 18 17 21 21 C 1.52997 * 109.46975 * 183.77125 * 16 14 9 22 22 H 0.96997 * 119.99827 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.03301 * 121.43169 * 11 9 7 24 24 H 1.09006 * 110.03002 * 0.02562 * 11 9 7 25 25 H 1.09000 * 110.48513 * 217.71225 * 12 11 9 26 26 H 1.09001 * 110.48862 * 95.06641 * 12 11 9 27 27 H 1.08996 * 110.75633 * 279.62666 * 13 12 11 28 28 H 1.09007 * 110.75524 * 156.25911 * 13 12 11 29 29 H 1.09001 * 109.47372 * 303.77498 * 16 14 9 30 30 H 1.08992 * 109.47056 * 59.99654 * 17 16 14 31 31 H 1.09004 * 109.47006 * 299.99770 * 17 16 14 32 32 H 1.09004 * 109.47368 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47372 * 59.99964 * 18 17 16 34 34 H 1.09002 * 109.47398 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47194 * 300.00476 * 19 18 17 36 36 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47375 * 300.00370 * 21 16 14 39 39 H 1.09000 * 109.47140 * 60.00388 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6022 -2.5562 -0.8735 11 6 0.4154 -2.6253 1.2865 12 6 0.9277 -3.8799 2.0236 13 6 1.5678 -4.7416 0.9070 14 6 2.2420 -3.6814 0.0005 15 1 3.2018 -3.3773 0.4182 16 6 2.4249 -4.2268 -1.4172 17 6 3.0583 -3.1497 -2.3001 18 6 3.2419 -3.6952 -3.7177 19 6 4.1539 -4.9230 -3.6776 20 6 3.5207 -6.0001 -2.7946 21 6 3.3367 -5.4548 -1.3775 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6389 -2.7436 1.0365 24 1 0.5546 -1.7423 1.9103 25 1 0.0993 -4.4134 2.4896 26 1 1.6741 -3.6060 2.7693 27 1 0.8036 -5.2903 0.3566 28 1 2.3103 -5.4230 1.3226 29 1 1.4546 -4.5078 -1.8265 30 1 4.0286 -2.8687 -1.8908 31 1 2.4087 -2.2748 -2.3284 32 1 3.6927 -2.9278 -4.3469 33 1 2.2717 -3.9766 -4.1272 34 1 4.2851 -5.3114 -4.6875 35 1 5.1241 -4.6417 -3.2680 36 1 2.5505 -6.2815 -3.2040 37 1 4.1705 -6.8747 -2.7656 38 1 4.3071 -5.1738 -0.9682 39 1 2.8855 -6.2221 -0.7485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:48 Heat of formation + Delta-G solvation = -54.838568 kcal Electronic energy + Delta-G solvation = -16181.320218 eV Core-core repulsion = 13893.254995 eV Total energy + Delta-G solvation = -2288.065223 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77807 -36.30232 -32.45075 -30.99430 -30.31515 -27.92736 -26.24700 -23.91643 -22.06044 -21.49655 -19.33747 -19.22551 -18.40341 -16.11366 -15.19387 -14.62146 -14.03760 -13.87679 -13.63228 -13.52916 -12.71616 -12.26213 -12.15180 -11.98399 -11.66834 -11.45431 -10.92656 -10.74915 -10.67447 -10.59420 -10.47932 -10.31571 -10.00201 -9.87436 -9.68989 -9.54354 -9.47704 -9.12919 -8.70982 -8.58260 -8.27262 -5.91620 -3.92836 3.35829 3.40789 3.43374 4.50782 5.10727 5.19241 5.21856 5.39890 5.64043 5.65009 5.80076 5.83701 5.90025 5.97166 6.00001 6.02369 6.16365 6.19396 6.35897 6.46654 6.47966 6.52812 6.58331 6.65013 6.70297 6.79785 6.85224 6.92158 7.01909 7.11863 7.20160 7.31930 7.44957 7.55451 7.83989 8.03048 8.12549 8.60139 9.10375 9.69598 11.17714 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.010147 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.406999 B = 2758.811617 C = 3594.688595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.026 0.974 11 C -0.094 4.094 12 C -0.128 4.128 13 C -0.118 4.118 14 C -0.081 4.081 15 H 0.061 0.939 16 C -0.068 4.068 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.115 4.115 22 H 0.258 0.742 23 H 0.034 0.966 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.971 -9.321 -3.337 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.711 3.289 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.045 0.955 11 C -0.133 4.133 12 C -0.165 4.165 13 C -0.155 4.155 14 C -0.099 4.099 15 H 0.080 0.920 16 C -0.087 4.087 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.152 4.152 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.809 -9.184 -3.340 10.891 hybrid contribution 0.427 1.008 0.055 1.096 sum 5.236 -8.176 -3.285 10.250 Atomic orbital electron populations 1.69975 1.05785 1.26253 1.50947 1.24963 0.94751 0.98747 0.95666 0.86818 0.79702 0.83890 0.78516 1.20387 1.21524 1.20469 1.21208 0.92555 0.90458 1.49774 0.92905 1.19260 0.92146 0.91379 0.93603 0.95545 1.22078 0.97868 0.94738 0.98583 1.22434 0.98661 0.97994 0.97445 1.22532 0.98538 0.97205 0.97262 1.22163 0.99609 0.95762 0.92376 0.92036 1.21075 0.97577 0.93793 0.96238 1.21567 1.01324 0.99132 0.92736 1.21586 0.99077 0.96670 0.98485 1.21527 0.99075 0.96216 0.98657 1.21516 1.00231 0.97358 0.96387 1.21631 1.00003 0.98000 0.95571 0.93234 0.94731 0.92187 0.94022 0.93058 0.92776 0.93665 0.92305 0.92823 0.89607 0.92813 0.92595 0.93109 0.92449 0.92461 0.93044 0.92608 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 12.44 55.43 0.69 -24.99 16 2 C 0.06 1.65 5.09 -17.82 -0.09 1.56 16 3 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.39 7.04 -34.44 -0.24 -13.63 16 8 H 0.05 1.41 7.54 -52.49 -0.40 1.01 16 9 C 0.05 1.33 1.76 -90.65 -0.16 1.17 16 10 H 0.03 0.71 7.74 -51.93 -0.40 0.31 16 11 C -0.09 -2.25 5.60 -25.61 -0.14 -2.39 16 12 C -0.13 -2.50 6.83 -25.07 -0.17 -2.68 16 13 C -0.12 -2.14 5.28 -24.72 -0.13 -2.27 16 14 C -0.08 -1.63 1.97 -88.94 -0.18 -1.80 16 15 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 16 C -0.07 -1.22 1.58 -90.62 -0.14 -1.36 16 17 C -0.11 -2.01 4.71 -26.73 -0.13 -2.13 16 18 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 19 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 20 C -0.12 -1.55 5.92 -26.76 -0.16 -1.70 16 21 C -0.11 -1.71 4.99 -26.76 -0.13 -1.85 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 1.58 7.26 -51.93 -0.38 1.20 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.95 8.06 -51.93 -0.42 0.53 16 28 H 0.04 0.74 7.99 -51.92 -0.41 0.32 16 29 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.84 6.60 -51.93 -0.34 1.50 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.80 7.21 -51.93 -0.37 0.43 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -27.21 291.98 -9.25 -36.46 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.33 Total: -1.43 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -1.99 Total: -30.80 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.69 Total: -24.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.21 -9.25 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.380 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds