Wall clock time and date at job start Mon Mar 30 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48504 * 109.46943 * 240.00035 * 3 2 1 5 5 H 1.48502 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47404 * 120.00231 * 3 2 1 7 7 C 1.37874 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00585 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99692 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.05902 * 58.58018 * 9 7 2 11 11 C 1.53877 * 110.03203 * 297.16374 * 9 7 2 12 12 C 1.54263 * 106.59897 * 240.71677 * 11 9 7 13 13 C 1.54888 * 104.19533 * 336.38836 * 12 11 9 14 14 C 1.54268 * 110.03169 * 179.97438 * 9 7 2 15 15 H 1.08999 * 110.59507 * 24.16283 * 14 9 7 16 16 C 1.52996 * 110.48688 * 261.56960 * 14 9 7 17 17 C 1.53002 * 109.46891 * 63.77534 * 16 14 9 18 18 C 1.52996 * 109.46891 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47328 * 299.99597 * 18 17 16 20 20 C 1.52997 * 109.47060 * 60.00126 * 19 18 17 21 21 C 1.52997 * 109.46975 * 183.77125 * 16 14 9 22 22 H 0.96997 * 119.99827 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.03301 * 121.43169 * 11 9 7 24 24 H 1.09006 * 110.03002 * 0.02562 * 11 9 7 25 25 H 1.09000 * 110.48513 * 217.71225 * 12 11 9 26 26 H 1.09001 * 110.48862 * 95.06641 * 12 11 9 27 27 H 1.08996 * 110.75633 * 279.62666 * 13 12 11 28 28 H 1.09007 * 110.75524 * 156.25911 * 13 12 11 29 29 H 1.09001 * 109.47372 * 303.77498 * 16 14 9 30 30 H 1.08992 * 109.47056 * 59.99654 * 17 16 14 31 31 H 1.09004 * 109.47006 * 299.99770 * 17 16 14 32 32 H 1.09004 * 109.47368 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47372 * 59.99964 * 18 17 16 34 34 H 1.09002 * 109.47398 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47194 * 300.00476 * 19 18 17 36 36 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47375 * 300.00370 * 21 16 14 39 39 H 1.09000 * 109.47140 * 60.00388 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6022 -2.5562 -0.8735 11 6 0.4154 -2.6253 1.2865 12 6 0.9277 -3.8799 2.0236 13 6 1.5678 -4.7416 0.9070 14 6 2.2420 -3.6814 0.0005 15 1 3.2018 -3.3773 0.4182 16 6 2.4249 -4.2268 -1.4172 17 6 3.0583 -3.1497 -2.3001 18 6 3.2419 -3.6952 -3.7177 19 6 4.1539 -4.9230 -3.6776 20 6 3.5207 -6.0001 -2.7946 21 6 3.3367 -5.4548 -1.3775 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6389 -2.7436 1.0365 24 1 0.5546 -1.7423 1.9103 25 1 0.0993 -4.4134 2.4896 26 1 1.6741 -3.6060 2.7693 27 1 0.8036 -5.2903 0.3566 28 1 2.3103 -5.4230 1.3226 29 1 1.4546 -4.5078 -1.8265 30 1 4.0286 -2.8687 -1.8908 31 1 2.4087 -2.2748 -2.3284 32 1 3.6927 -2.9278 -4.3469 33 1 2.2717 -3.9766 -4.1272 34 1 4.2851 -5.3114 -4.6875 35 1 5.1241 -4.6417 -3.2680 36 1 2.5505 -6.2815 -3.2040 37 1 4.1705 -6.8747 -2.7656 38 1 4.3071 -5.1738 -0.9682 39 1 2.8855 -6.2221 -0.7485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:47 Heat of formation + Delta-G solvation = -67.082660 kcal Electronic energy + Delta-G solvation = -16181.851162 eV Core-core repulsion = 13893.254995 eV Total energy + Delta-G solvation = -2288.596167 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.25581 -37.81660 -34.50203 -32.40659 -31.60143 -29.79503 -27.80915 -25.88607 -23.33447 -22.88058 -20.98221 -20.51670 -20.18163 -18.16103 -16.66691 -16.53246 -15.59653 -15.39915 -14.90410 -14.83353 -14.16005 -14.08536 -13.67708 -13.63876 -13.12223 -12.96665 -12.82038 -12.46308 -12.36822 -11.90624 -11.90200 -11.87004 -11.60330 -11.38843 -11.27191 -11.18158 -11.10880 -10.65197 -10.52582 -10.40440 -10.34370 -8.06327 -6.12756 1.39542 1.40048 1.47215 2.45101 3.24565 3.88508 3.93816 4.02497 4.19804 4.26204 4.30436 4.48207 4.55478 4.73323 4.77422 4.79028 4.83445 4.93579 4.96420 5.03357 5.05447 5.18803 5.22109 5.24685 5.29567 5.34734 5.38920 5.43279 5.49157 5.53607 5.61984 5.67730 5.72833 5.79204 5.85041 6.03955 6.10539 6.50906 6.99192 7.52488 9.02602 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.010147 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.406999 B = 2758.811617 C = 3594.688595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.010 1.010 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.108 4.108 14 C -0.076 4.076 15 H 0.051 0.949 16 C -0.065 4.065 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.108 4.108 22 H 0.256 0.744 23 H 0.016 0.984 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -11.332 -3.502 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.033 3.967 10 H 0.008 0.992 11 C -0.131 4.131 12 C -0.158 4.158 13 C -0.145 4.145 14 C -0.094 4.094 15 H 0.069 0.931 16 C -0.083 4.083 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.146 4.146 22 H 0.065 0.935 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.465 -11.202 -3.503 13.400 hybrid contribution -0.116 1.678 0.095 1.684 sum 6.348 -9.524 -3.408 11.943 Atomic orbital electron populations 1.70107 1.07155 1.26750 1.52360 1.25693 0.95508 1.02043 0.95738 0.85872 0.78549 0.80067 0.78760 1.19749 1.21404 1.19779 1.21503 0.92485 0.91763 1.48618 0.93281 1.19221 0.92578 0.92628 0.92305 0.99194 1.21946 0.96973 0.95806 0.98356 1.22376 0.99620 0.96108 0.97715 1.22489 0.99179 0.96708 0.96108 1.22043 0.97852 0.94889 0.94655 0.93070 1.21009 0.97959 0.95041 0.94318 1.21460 0.99777 0.97983 0.95254 1.21552 0.99850 0.98005 0.96144 1.21512 0.98387 0.95035 1.00156 1.21517 1.00959 0.97967 0.94800 1.21568 0.99111 0.96485 0.97409 0.93503 0.96486 0.95537 0.91698 0.92472 0.91899 0.90465 0.93330 0.93508 0.94089 0.92422 0.92726 0.90891 0.92185 0.92281 0.90525 0.92464 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 12.44 21.45 0.27 -55.19 16 2 C 0.01 0.44 5.09 84.65 0.43 0.87 16 3 Si 0.94 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.51 -27.95 7.04 25.60 0.18 -27.77 16 8 H 0.05 2.68 7.54 -2.91 -0.02 2.66 16 9 C 0.05 2.58 1.76 -10.81 -0.02 2.56 16 10 H -0.01 -0.58 7.74 -2.38 -0.02 -0.60 16 11 C -0.09 -4.53 5.60 31.32 0.18 -4.36 16 12 C -0.12 -4.56 6.83 31.67 0.22 -4.34 16 13 C -0.11 -3.65 5.28 31.90 0.17 -3.48 16 14 C -0.08 -3.03 1.97 -9.71 -0.02 -3.05 16 15 H 0.05 2.15 7.68 -2.39 -0.02 2.13 16 16 C -0.06 -2.26 1.58 -10.80 -0.02 -2.28 16 17 C -0.11 -3.95 4.71 30.59 0.14 -3.81 16 18 C -0.12 -3.47 5.92 30.59 0.18 -3.29 16 19 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 20 C -0.12 -2.60 5.92 30.58 0.18 -2.42 16 21 C -0.11 -2.91 4.99 30.58 0.15 -2.76 16 22 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.03 1.43 7.26 -2.38 -0.02 1.41 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 28 H 0.08 2.19 7.99 -2.38 -0.02 2.17 16 29 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.85 6.60 -2.38 -0.02 1.83 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.70 7.21 -2.39 -0.02 1.68 16 Total: -1.00 -60.80 291.98 5.22 -55.58 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.97 Total: 9.31 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 1.96 Total: -56.61 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.27 Total: -55.19 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -60.80 5.22 -55.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.506 kcal (2) G-P(sol) polarization free energy of solvation -60.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds