Wall clock time and date at job start Mon Mar 30 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86795 * 120.00414 * 2 1 4 4 H 1.48496 * 109.47552 * 270.00220 * 3 2 1 5 5 H 1.48499 * 109.46721 * 30.00143 * 3 2 1 6 6 H 1.48501 * 109.47357 * 150.00031 * 3 2 1 7 7 C 1.40288 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00203 * 164.71557 * 7 2 1 9 9 C 1.39298 * 119.99849 * 344.71387 * 7 2 1 10 10 C 1.40107 * 120.06096 * 331.16077 * 9 7 2 11 11 C 1.38658 * 119.89274 * 179.97438 * 10 9 7 12 12 C 1.38322 * 119.97463 * 0.02562 * 11 10 9 13 13 C 1.40313 * 119.88738 * 0.27320 * 12 11 10 14 14 N 1.32556 * 133.23257 * 180.46636 * 13 12 11 15 15 N 1.28655 * 109.50883 * 179.50188 * 14 13 12 16 16 C 1.31297 * 110.26666 * 359.72414 * 15 14 13 17 17 Cl 1.73600 * 126.26296 * 179.97438 * 16 15 14 18 18 N 1.35906 * 107.47194 * 0.02562 * 16 15 14 19 19 H 0.96999 * 119.99860 * 359.97438 * 1 2 3 20 20 H 1.07994 * 120.05162 * 359.97438 * 10 9 7 21 21 H 1.08001 * 120.00848 * 180.02562 * 11 10 9 22 22 H 1.08009 * 120.05867 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0464 -1.4000 5 1 1.4384 2.6525 0.7001 6 1 3.5385 1.4400 0.7000 7 6 2.0082 -1.2150 -0.0005 8 1 3.0595 -1.2315 -0.2471 9 6 1.3486 -2.4001 0.3170 10 6 0.2462 -2.3798 1.1815 11 6 -0.4081 -3.5615 1.4947 12 6 0.0285 -4.7575 0.9541 13 6 1.1369 -4.7727 0.0939 14 7 1.7626 -5.7385 -0.5639 15 7 2.7357 -5.2374 -1.2400 16 6 2.7894 -3.9373 -1.0645 17 17 3.9393 -2.8512 -1.7799 18 7 1.7808 -3.5977 -0.2193 19 1 -0.4850 0.8400 0.0004 20 1 -0.0933 -1.4454 1.6031 21 1 -1.2583 -3.5480 2.1606 22 1 -0.4804 -5.6787 1.1969 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005455.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:51 Heat of formation + Delta-G solvation = 82.826670 kcal Electronic energy + Delta-G solvation = -12772.866481 eV Core-core repulsion = 10355.014497 eV Total energy + Delta-G solvation = -2417.851984 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.11630 -37.01569 -36.26857 -34.17618 -32.57316 -29.91497 -28.51642 -25.89909 -22.82350 -22.04925 -21.14779 -17.93499 -17.15414 -16.10114 -15.46427 -15.20752 -14.79006 -13.87328 -13.57676 -12.42445 -12.13594 -11.81826 -11.62501 -11.25836 -11.18719 -11.01762 -10.83514 -10.55882 -10.18649 -9.82351 -9.65102 -9.44020 -8.32303 -7.49347 -7.10185 -5.00679 1.90149 2.06923 2.34211 2.72592 2.74512 2.81100 3.44120 3.59820 3.82162 4.13753 4.87153 5.46526 5.86146 6.03323 6.18273 6.38216 6.50992 6.84567 6.90658 7.27881 7.40667 7.53792 7.61616 7.89789 8.03854 8.30741 9.45705 9.51022 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.013958 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.190514 B = 2005.565995 C = 2925.834005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.078 3.922 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.431 4.431 8 H 0.103 0.897 9 C 0.284 3.716 10 C -0.255 4.255 11 C -0.017 4.017 12 C -0.270 4.270 13 C 0.257 3.743 14 N -0.354 5.354 15 N -0.244 5.244 16 C 0.149 3.851 17 Cl 0.026 6.974 18 N -0.404 5.404 19 H 0.297 0.703 20 H 0.141 0.859 21 H 0.114 0.886 22 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 4.526 1.406 4.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.148 4.148 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.461 4.461 8 H 0.121 0.879 9 C 0.181 3.819 10 C -0.277 4.277 11 C -0.041 4.041 12 C -0.294 4.294 13 C 0.014 3.986 14 N -0.202 5.202 15 N -0.089 5.089 16 C -0.138 4.138 17 Cl 0.053 6.947 18 N -0.089 5.089 19 H 0.108 0.892 20 H 0.159 0.841 21 H 0.132 0.868 22 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.541 3.289 0.703 3.699 hybrid contribution 0.038 2.155 0.305 2.177 sum 1.579 5.444 1.008 5.757 Atomic orbital electron populations 1.69733 1.07979 1.31286 1.27940 1.26042 0.95006 1.02068 0.91658 0.85956 0.80659 0.78355 0.80212 1.18508 1.19103 1.17543 1.19581 0.98554 0.89776 1.38181 0.87894 1.18082 0.92335 0.81366 0.90093 1.20831 1.01725 0.98506 1.06652 1.20908 0.96254 0.91909 0.94991 1.19485 1.01448 0.98892 1.09624 1.21928 0.96433 0.81371 0.98876 1.74934 1.07526 1.22913 1.14864 1.74174 1.14410 1.02476 1.17810 1.24197 0.95393 0.90820 1.03425 1.98326 1.54671 1.60684 1.81004 1.44155 1.22677 1.10043 1.32014 0.89184 0.84099 0.86759 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.14 11.05 55.57 0.61 -15.53 14 2 C 0.08 1.65 5.14 -17.27 -0.09 1.56 14 3 Si 0.93 15.70 29.59 -169.99 -5.03 10.67 14 4 H -0.26 -4.41 7.11 56.52 0.40 -4.01 14 5 H -0.27 -4.33 7.11 56.52 0.40 -3.93 14 6 H -0.25 -4.27 7.11 56.52 0.40 -3.87 14 7 C -0.43 -9.94 8.34 -38.42 -0.32 -10.26 14 8 H 0.10 2.29 5.80 -52.49 -0.30 1.99 14 9 C 0.28 6.96 6.41 -83.92 -0.54 6.42 14 10 C -0.25 -5.83 8.63 -38.73 -0.33 -6.17 14 11 C -0.02 -0.35 10.07 -39.40 -0.40 -0.75 14 12 C -0.27 -6.01 10.14 -38.77 -0.39 -6.40 14 13 C 0.26 6.48 7.90 -155.80 -1.23 5.25 14 14 N -0.35 -9.18 12.31 31.13 0.38 -8.80 14 15 N -0.24 -6.22 12.21 32.23 0.39 -5.83 14 16 C 0.15 3.62 8.70 -88.92 -0.77 2.85 14 17 Cl 0.03 0.53 26.70 -51.86 -1.38 -0.86 14 18 N -0.40 -10.21 3.01 -58.26 -0.18 -10.39 14 19 H 0.30 5.64 8.29 -40.82 -0.34 5.30 14 20 H 0.14 3.16 6.32 -52.49 -0.33 2.83 14 21 H 0.11 1.96 8.06 -52.49 -0.42 1.54 14 22 H 0.13 2.48 8.06 -52.48 -0.42 2.05 14 LS Contribution 218.06 15.07 3.29 3.29 Total: -1.00 -26.42 218.06 -6.60 -33.03 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -0.62 Total: 1.91 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -4.08 Total: -7.49 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 1.22 Total: -40.55 kcal Atomic # 14 Polarization: 15.70 SS G_CDS: -5.03 Total: 10.67 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -1.38 Total: -0.86 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -26.42 -6.60 -33.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005455.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.856 kcal (2) G-P(sol) polarization free energy of solvation -26.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds