Wall clock time and date at job start Mon Mar 30 2020 03:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47126 * 274.64016 * 3 2 1 5 5 H 1.48499 * 109.47513 * 34.64248 * 3 2 1 6 6 H 1.48499 * 109.47107 * 154.64572 * 3 2 1 7 7 C 1.39883 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99933 * 162.10517 * 7 2 1 9 9 C 1.41355 * 119.99593 * 342.10803 * 7 2 1 10 10 C 1.40415 * 120.05412 * 154.97080 * 9 7 2 11 11 C 1.38985 * 119.40306 * 180.02562 * 10 9 7 12 12 N 1.36186 * 133.69131 * 179.97438 * 11 10 9 13 13 C 1.29868 * 108.76607 * 180.02562 * 12 11 10 14 14 O 1.34239 * 110.38606 * 0.02562 * 13 12 11 15 15 C 1.35071 * 108.23906 * 359.97438 * 14 13 12 16 16 C 1.39303 * 133.66237 * 179.97438 * 15 14 13 17 17 Cl 1.73602 * 119.84492 * 0.03500 * 16 15 14 18 18 C 1.36326 * 120.30436 * 180.02562 * 16 15 14 19 19 H 0.97003 * 120.00031 * 0.02562 * 1 2 3 20 20 H 1.08008 * 120.29587 * 359.74309 * 10 9 7 21 21 H 1.08001 * 124.80443 * 179.97438 * 13 12 11 22 22 H 1.08005 * 119.82094 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3921 2.1031 -1.3955 5 1 1.4928 2.6224 0.7959 6 1 3.5859 1.4138 0.5995 7 6 2.0081 -1.2114 0.0005 8 1 3.0490 -1.2341 -0.2868 9 6 1.3526 -2.4058 0.3772 10 6 1.8202 -3.6432 -0.0936 11 6 1.1651 -4.8091 0.2848 12 7 1.3594 -6.1288 0.0105 13 6 0.4494 -6.8218 0.6255 14 8 -0.3678 -6.0115 1.3167 15 6 0.0439 -4.7384 1.1321 16 6 -0.4104 -3.5044 1.5920 17 17 -1.7946 -3.4282 2.6369 18 6 0.2272 -2.3566 1.2256 19 1 -0.4850 0.8401 -0.0004 20 1 2.6786 -3.6882 -0.7477 21 1 0.3620 -7.8975 0.5858 22 1 -0.1314 -1.4041 1.5871 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261022552.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:16 Heat of formation + Delta-G solvation = 15.445764 kcal Electronic energy + Delta-G solvation = -12481.025814 eV Core-core repulsion = 10027.959224 eV Total energy + Delta-G solvation = -2453.066590 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.06997 -37.14640 -35.63437 -33.97422 -33.14370 -29.77569 -28.60979 -25.69504 -22.52854 -21.62906 -20.66803 -18.10300 -16.66059 -16.13273 -15.68477 -15.53010 -14.45827 -13.51386 -13.37226 -12.97345 -12.19687 -11.89518 -11.39673 -11.29491 -11.16445 -10.93389 -10.53781 -10.48619 -10.00410 -9.94325 -9.58774 -9.30260 -7.67856 -7.40609 -7.02109 -4.63855 1.81213 2.37597 2.93833 2.97350 3.00704 3.03717 3.43783 3.55532 3.76597 4.28552 4.80379 5.25618 5.85023 6.13680 6.38422 6.58064 6.61329 6.90408 7.06714 7.23433 7.39457 7.51129 7.71623 8.17806 8.38459 8.56564 8.61683 9.90977 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.009938 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.711108 B = 2816.862765 C = 3531.034190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.116 3.884 10 C -0.200 4.200 11 C 0.067 3.933 12 N -0.497 5.497 13 C 0.193 3.807 14 O -0.222 6.222 15 C -0.095 4.095 16 C 0.007 3.993 17 Cl -0.104 7.104 18 C -0.099 4.099 19 H 0.288 0.712 20 H 0.112 0.888 21 H 0.239 0.761 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -2.684 2.256 3.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.112 3.888 10 C -0.222 4.222 11 C -0.043 4.043 12 N -0.230 5.230 13 C -0.038 4.038 14 O -0.113 6.113 15 C -0.144 4.144 16 C -0.020 4.020 17 Cl -0.076 7.076 18 C -0.118 4.118 19 H 0.099 0.901 20 H 0.130 0.870 21 H 0.255 0.745 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.615 -2.734 1.978 3.430 hybrid contribution -0.445 0.783 0.414 0.991 sum -1.061 -1.951 2.391 3.263 Atomic orbital electron populations 1.69782 1.07719 1.30208 1.33357 1.26017 0.94851 1.01882 0.91832 0.86161 0.80725 0.79846 0.79359 1.19268 1.19758 1.18110 1.19552 0.98539 0.90431 1.39012 0.89294 1.17329 0.90226 0.92264 0.88971 1.20122 1.05271 0.88721 1.08081 1.19465 0.95583 0.90813 0.98433 1.70544 1.24858 1.03254 1.24299 1.27727 0.86828 0.98103 0.91096 1.84324 1.50679 1.15724 1.60579 1.19538 1.01801 0.82824 1.10265 1.19162 0.92640 0.90289 0.99905 1.98281 1.43737 1.98810 1.66779 1.21169 0.97215 0.95398 0.98055 0.90113 0.86996 0.74525 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.77 10.98 55.54 0.61 -18.16 14 2 C 0.07 1.70 5.12 -17.35 -0.09 1.61 14 3 Si 0.92 17.21 29.60 -169.99 -5.03 12.18 14 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 5 H -0.27 -5.03 7.11 56.52 0.40 -4.62 14 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 7 C -0.45 -10.95 9.03 -37.78 -0.34 -11.29 14 8 H 0.09 2.07 7.91 -52.49 -0.41 1.66 14 9 C 0.12 2.95 5.57 -106.84 -0.59 2.35 14 10 C -0.20 -4.96 9.85 -38.49 -0.38 -5.34 14 11 C 0.07 1.64 7.22 -84.72 -0.61 1.02 14 12 N -0.50 -10.77 11.34 -12.57 -0.14 -10.91 14 13 C 0.19 3.44 13.12 51.93 0.68 4.12 14 14 O -0.22 -4.65 10.77 3.73 0.04 -4.61 14 15 C -0.10 -2.26 7.23 -38.25 -0.28 -2.53 14 16 C 0.01 0.17 6.28 -39.87 -0.25 -0.08 14 17 Cl -0.10 -2.15 28.94 -51.86 -1.50 -3.65 14 18 C -0.10 -2.44 8.37 -39.22 -0.33 -2.77 14 19 H 0.29 6.21 8.30 -40.82 -0.34 5.87 14 20 H 0.11 2.64 8.06 -52.48 -0.42 2.22 14 21 H 0.24 2.60 8.06 -52.49 -0.42 2.18 14 22 H 0.15 3.64 6.16 -52.48 -0.32 3.32 14 LS Contribution 223.22 15.07 3.36 3.36 Total: -1.00 -27.50 223.22 -5.57 -33.07 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -0.72 Total: 1.61 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.19 Total: -12.90 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.47 Total: -29.07 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.04 Total: -4.61 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -1.50 Total: -3.65 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.50 -5.57 -33.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022552.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.518 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds