Wall clock time and date at job start Mon Mar 30 2020 03:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86799 * 120.00484 * 2 1 4 4 H 1.48498 * 109.47122 * 239.99837 * 3 2 1 5 5 H 1.48500 * 109.46708 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47006 * 119.99885 * 3 2 1 7 7 C 1.40097 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.41545 * 120.00247 * 0.02562 * 7 2 1 10 10 N 1.34158 * 120.72625 * 359.97438 * 9 7 2 11 11 C 1.32155 * 120.47455 * 180.02562 * 10 9 7 12 12 S 1.76200 * 119.00307 * 179.97438 * 11 10 9 13 13 N 1.32903 * 121.99719 * 359.97438 * 11 10 9 14 14 C 1.32148 * 121.04588 * 359.97438 * 13 11 10 15 15 C 1.38480 * 119.27305 * 0.02562 * 14 13 11 16 16 C 1.50855 * 108.44877 * 179.97438 * 15 14 13 17 17 N 1.48127 * 105.64101 * 342.66609 * 16 15 14 18 18 C 1.48107 * 103.91293 * 27.34763 * 17 16 15 19 19 H 0.97003 * 119.99483 * 0.02562 * 1 2 3 20 20 H 1.41003 * 99.99897 * 90.00207 * 12 11 10 21 21 H 1.09005 * 110.21205 * 223.62377 * 16 15 14 22 22 H 1.08998 * 110.28150 * 101.74732 * 16 15 14 23 23 H 1.00901 * 110.99867 * 146.72270 * 17 16 15 24 24 H 1.09003 * 110.19413 * 91.67232 * 18 17 16 25 25 H 1.08999 * 110.19953 * 213.54644 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0947 1.6962 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6962 1.2125 7 6 2.0072 -1.2133 0.0005 8 1 3.0872 -1.2134 0.0010 9 6 1.2994 -2.4391 0.0005 10 7 -0.0421 -2.4561 0.0005 11 6 -0.6978 -3.6034 0.0011 12 16 -2.4597 -3.5805 0.0017 13 7 -0.0687 -4.7741 0.0011 14 6 1.2512 -4.8385 0.0001 15 6 1.9864 -3.6650 -0.0005 16 6 3.4525 -4.0202 -0.0009 17 7 3.5202 -5.4375 0.4243 18 6 2.2175 -5.9995 -0.0007 19 1 -0.4849 0.8401 -0.0004 20 1 -2.7050 -3.5776 -1.3868 21 1 3.9931 -3.3890 0.7045 22 1 3.8683 -3.9071 -1.0021 23 1 4.2851 -5.9148 -0.0287 24 1 2.2985 -6.4211 -1.0026 25 1 1.8890 -6.7631 0.7043 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261041761.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:26 Heat of formation + Delta-G solvation = 35.528547 kcal Electronic energy + Delta-G solvation = -12891.786032 eV Core-core repulsion = 10609.759849 eV Total energy + Delta-G solvation = -2282.026183 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.43784 -38.00677 -36.03829 -33.49402 -31.71835 -28.99012 -28.46402 -25.11348 -23.45223 -22.12610 -19.66513 -18.77209 -18.22385 -16.92254 -16.78739 -16.14947 -15.55771 -15.17287 -14.49772 -14.46859 -14.03900 -13.72507 -13.10905 -13.02522 -12.91150 -12.66826 -12.23416 -11.99506 -11.59755 -10.97911 -10.68177 -10.23585 -9.60799 -9.32126 -9.08352 -8.47316 -6.83822 0.12793 0.62344 0.83506 1.40180 1.47222 1.54214 1.64049 2.16643 2.70042 3.22655 3.36389 3.57398 3.98876 4.29902 4.43603 4.47604 4.55903 4.83480 4.91433 5.07633 5.21210 5.56449 5.64406 5.94931 6.36875 6.47986 6.63039 6.85402 7.79340 8.25958 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.012927 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.037657 B = 2165.531453 C = 3409.261137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.020 3.980 3 Si 0.996 3.004 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.427 4.427 8 H 0.106 0.894 9 C 0.239 3.761 10 N -0.495 5.495 11 C 0.274 3.726 12 S -0.063 6.063 13 N -0.587 5.587 14 C 0.121 3.879 15 C -0.316 4.316 16 C 0.120 3.880 17 N -0.655 5.655 18 C 0.109 3.891 19 H 0.288 0.712 20 H 0.106 0.894 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.362 0.638 24 H 0.080 0.920 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -2.354 -2.066 5.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.461 4.461 8 H 0.124 0.876 9 C 0.109 3.891 10 N -0.217 5.217 11 C -0.107 4.107 12 S 0.091 5.909 13 N -0.313 5.313 14 C -0.022 4.022 15 C -0.325 4.325 16 C -0.010 4.010 17 N -0.286 5.286 18 C -0.021 4.021 19 H 0.099 0.901 20 H 0.070 0.930 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.180 0.820 24 H 0.098 0.902 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.541 -2.117 -1.097 3.485 hybrid contribution 1.748 0.596 -1.877 2.633 sum 4.290 -1.521 -2.974 5.437 Atomic orbital electron populations 1.70153 1.09185 1.30414 1.26163 1.27209 0.95824 1.05118 0.92334 0.85049 0.78566 0.74478 0.80478 1.17770 1.19199 1.17876 1.20134 0.95435 0.89348 1.41134 0.87606 1.18854 0.87934 0.92941 0.89416 1.70079 1.08496 1.25546 1.17595 1.24220 0.99167 0.87182 1.00128 1.85834 0.94666 1.97859 1.12572 1.67903 1.09671 1.28520 1.25185 1.22238 0.90233 0.96670 0.93090 1.22195 0.98528 0.95580 1.16225 1.20765 0.91049 0.90092 0.99127 1.63504 1.03744 1.02499 1.58895 1.21121 0.86966 0.92911 1.01084 0.90070 0.93027 0.90206 0.92447 0.82033 0.90248 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.28 11.53 21.85 0.25 -38.03 15 2 C 0.02 0.96 5.50 85.32 0.47 1.43 15 3 Si 1.00 35.25 29.56 68.60 2.03 37.28 15 4 H -0.25 -8.55 7.11 99.48 0.71 -7.85 15 5 H -0.27 -9.10 7.11 99.48 0.71 -8.39 15 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 15 7 C -0.43 -21.83 9.12 23.54 0.21 -21.61 15 8 H 0.11 4.86 7.68 -2.91 -0.02 4.84 15 9 C 0.24 13.08 6.57 40.16 0.26 13.34 15 10 N -0.49 -28.17 8.02 -190.07 -1.52 -29.69 15 11 C 0.27 14.49 7.90 180.44 1.43 15.92 15 12 S -0.06 -2.71 26.14 -56.49 -1.48 -4.18 15 13 N -0.59 -29.82 10.38 -184.38 -1.91 -31.74 15 14 C 0.12 5.66 7.50 42.68 0.32 5.98 15 15 C -0.32 -15.26 6.18 -19.20 -0.12 -15.38 15 16 C 0.12 4.42 7.16 85.37 0.61 5.03 15 17 N -0.66 -20.48 7.72 -515.15 -3.98 -24.45 15 18 C 0.11 3.73 7.45 85.43 0.64 4.37 15 19 H 0.29 13.44 8.29 -92.71 -0.77 12.67 15 20 H 0.11 4.09 9.55 73.80 0.70 4.80 15 21 H 0.08 2.93 8.14 -2.38 -0.02 2.91 15 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.36 8.21 8.92 -89.69 -0.80 7.41 15 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 25 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 Total: -1.00 -64.34 239.07 -1.63 -65.98 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.16 Total: 15.76 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 3.82 Total: 9.08 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -7.16 Total: -123.92 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -1.48 Total: -4.18 kcal Total: -64.34 -1.63 -65.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041761.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.505 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds