Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47023 * 270.00195 * 3 2 1 5 5 H 1.48496 * 109.46748 * 30.00166 * 3 2 1 6 6 H 1.48500 * 109.46840 * 150.00133 * 3 2 1 7 7 C 1.37873 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00491 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99876 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.34497 * 60.66670 * 9 7 2 11 11 C 1.53748 * 110.29898 * 182.78326 * 9 7 2 12 12 C 1.51221 * 104.54707 * 118.92827 * 11 9 7 13 13 C 1.38178 * 130.96608 * 180.02562 * 12 11 9 14 14 C 1.38320 * 120.14672 * 180.02562 * 13 12 11 15 15 Cl 1.73600 * 120.10341 * 179.97438 * 14 13 12 16 16 C 1.38400 * 119.80052 * 359.97405 * 14 13 12 17 17 C 1.37831 * 120.22077 * 0.02562 * 16 14 13 18 18 C 1.38580 * 108.54936 * 0.02562 * 12 11 9 19 19 N 1.39655 * 111.64005 * 359.97438 * 18 12 11 20 20 H 0.97001 * 119.99776 * 359.97438 * 1 2 3 21 21 H 1.09005 * 110.41895 * 0.16124 * 11 9 7 22 22 H 1.09000 * 110.41979 * 237.69659 * 11 9 7 23 23 H 1.08005 * 119.92694 * 359.97438 * 13 12 11 24 24 H 1.08003 * 119.89334 * 180.02562 * 16 14 13 25 25 H 1.07998 * 119.85342 * 180.02562 * 17 16 14 26 26 H 0.97001 * 124.96549 * 179.73454 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6276 -2.5768 -0.8913 11 6 2.2317 -3.6812 0.0688 12 6 1.8761 -4.3948 1.3538 13 6 2.4146 -5.5231 1.9423 14 6 1.9078 -5.9902 3.1416 15 17 2.5847 -7.4081 3.8797 16 6 0.8592 -5.3237 3.7514 17 6 0.3195 -4.1979 3.1673 18 6 0.8261 -3.7206 1.9565 19 7 0.4282 -2.6115 1.2068 20 1 -0.4850 0.8401 0.0004 21 1 3.2598 -3.3208 0.1059 22 1 2.0904 -4.3432 -0.7855 23 1 3.2326 -6.0419 1.4645 24 1 0.4626 -5.6868 4.6880 25 1 -0.4984 -3.6822 3.6485 26 1 -0.2906 -2.0065 1.4478 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261043488.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = 12.669719 kcal Electronic energy + Delta-G solvation = -12629.737740 eV Core-core repulsion = 10312.383867 eV Total energy + Delta-G solvation = -2317.353874 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.046 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.48650 -36.44073 -35.13013 -32.49334 -31.27308 -28.58464 -27.88357 -25.07070 -21.81685 -20.78094 -20.39684 -16.95619 -16.54223 -15.47148 -14.97462 -14.58035 -13.88589 -13.41715 -12.99851 -12.63746 -12.18840 -11.83873 -11.62834 -11.25780 -11.15448 -10.94083 -10.84789 -10.68760 -10.20482 -10.06131 -9.70964 -8.88833 -8.73864 -8.25867 -6.47324 -6.13956 -4.39784 1.94871 2.11551 2.76459 3.16279 3.24286 3.28167 4.22172 4.37281 4.52399 5.18455 5.32099 5.49291 5.81943 5.95433 6.08031 6.18191 6.32370 6.51020 6.69030 6.80607 6.88771 7.18408 7.30373 7.36361 7.65291 7.98282 8.19022 8.71005 9.06441 9.31255 10.76322 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.056713 B = 0.006667 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.599247 B = 4198.627570 C = 4329.877940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.259 3.741 10 H 0.042 0.958 11 C -0.075 4.075 12 C -0.174 4.174 13 C -0.049 4.049 14 C -0.121 4.121 15 Cl -0.105 7.105 16 C -0.060 4.060 17 C -0.204 4.204 18 C 0.226 3.774 19 N -0.692 5.692 20 H 0.266 0.734 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -7.912 4.057 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.158 3.842 10 H 0.060 0.940 11 C -0.112 4.112 12 C -0.180 4.180 13 C -0.069 4.069 14 C -0.150 4.150 15 Cl -0.076 7.076 16 C -0.079 4.079 17 C -0.229 4.229 18 C 0.112 3.888 19 N -0.315 5.315 20 H 0.076 0.924 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.136 0.864 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.425 -7.727 3.899 8.772 hybrid contribution 0.138 1.133 0.287 1.177 sum 1.563 -6.595 4.186 7.966 Atomic orbital electron populations 1.69826 1.06101 1.27501 1.49626 1.25079 0.94965 0.99678 0.93535 0.86463 0.79932 0.82572 0.78328 1.20342 1.21087 1.19658 1.21563 0.93345 0.90258 1.51594 0.91606 1.19162 0.87981 0.92543 0.84539 0.94039 1.21199 1.01158 0.95937 0.92929 1.19961 1.00144 0.97836 1.00009 1.20004 0.98723 0.94934 0.93254 1.20097 1.02705 0.93989 0.98217 1.98280 1.85440 1.40907 1.83001 1.20399 0.94503 0.94327 0.98711 1.20137 1.05381 1.00288 0.97055 1.18823 0.91662 0.87691 0.90646 1.46136 1.37010 1.25002 1.23329 0.92391 0.90546 0.91914 0.86385 0.86238 0.86582 0.74798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 12.24 55.43 0.68 -22.91 15 2 C 0.07 1.84 5.40 -17.82 -0.10 1.74 15 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 15 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.53 -13.61 8.77 -34.44 -0.30 -13.91 15 8 H 0.07 1.68 7.36 -52.49 -0.39 1.29 15 9 C 0.26 6.13 3.54 -68.67 -0.24 5.89 15 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 11 C -0.07 -1.52 6.57 -27.24 -0.18 -1.70 15 12 C -0.17 -3.45 6.23 -104.26 -0.65 -4.10 15 13 C -0.05 -0.87 9.82 -39.57 -0.39 -1.26 15 14 C -0.12 -2.04 6.32 -39.49 -0.25 -2.29 15 15 Cl -0.10 -1.55 28.96 -51.86 -1.50 -3.05 15 16 C -0.06 -0.99 9.81 -39.67 -0.39 -1.38 15 17 C -0.20 -3.70 10.07 -39.20 -0.39 -4.09 15 18 C 0.23 4.67 7.03 -83.64 -0.59 4.08 15 19 N -0.69 -15.70 5.91 -52.77 -0.31 -16.02 15 20 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 21 H 0.08 1.54 7.42 -51.93 -0.39 1.15 15 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.12 1.86 8.06 -52.48 -0.42 1.43 15 24 H 0.12 1.68 8.06 -52.48 -0.42 1.26 15 25 H 0.12 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.41 9.59 8.06 -40.82 -0.33 9.26 15 LS Contribution 243.15 15.07 3.66 3.66 Total: -1.00 -25.70 243.15 -8.32 -34.02 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -2.35 Total: 6.14 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -3.48 Total: -17.03 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.37 Total: -38.92 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -1.50 Total: -3.05 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.70 -8.32 -34.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043488.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.691 kcal (2) G-P(sol) polarization free energy of solvation -25.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds