Wall clock time and date at job start Mon Mar 30 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30925 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47119 * 239.99716 * 3 2 1 5 5 H 1.48497 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46738 * 119.99973 * 3 2 1 7 7 C 1.39807 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00114 * 163.40560 * 7 2 1 9 9 C 1.41339 * 119.99765 * 343.12980 * 7 2 1 10 10 C 1.46561 * 120.53120 * 336.24395 * 9 7 2 11 11 C 1.35552 * 118.85292 * 179.97438 * 10 9 7 12 12 C 1.41154 * 119.87918 * 0.02562 * 11 10 9 13 13 N 1.32864 * 131.88330 * 180.02562 * 12 11 10 14 14 C 1.32705 * 109.72587 * 179.97438 * 13 12 11 15 15 Cl 1.73598 * 125.19982 * 180.02562 * 14 13 12 16 16 N 1.31204 * 109.59919 * 359.97438 * 14 13 12 17 17 N 1.36594 * 120.75428 * 359.97438 * 12 11 10 18 18 C 1.35437 * 121.40676 * 359.74181 * 17 12 11 19 19 H 0.97006 * 119.99719 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.57189 * 359.95461 * 10 9 7 21 21 H 1.08008 * 120.06040 * 180.02562 * 11 10 9 22 22 H 1.07998 * 119.91778 * 180.26232 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6964 -1.2124 5 1 1.2783 2.7465 0.0006 6 1 3.0970 1.6963 1.2126 7 6 2.0083 -1.2108 -0.0005 8 1 3.0545 -1.2302 -0.2677 9 6 1.3471 -2.4086 0.3542 10 6 0.1476 -2.3759 1.1956 11 6 -0.4598 -3.5450 1.5146 12 6 0.0670 -4.7643 1.0370 13 7 -0.3254 -6.0235 1.1972 14 6 0.4990 -6.8357 0.5479 15 17 0.3592 -8.5650 0.4884 16 7 1.4353 -6.1318 -0.0431 17 7 1.1857 -4.7826 0.2533 18 6 1.8220 -3.6390 -0.0952 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2455 -1.4365 1.5555 21 1 -1.3452 -3.5435 2.1332 22 1 2.7023 -3.6811 -0.7194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053725.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:16 Heat of formation + Delta-G solvation = 95.109534 kcal Electronic energy + Delta-G solvation = -12303.378986 eV Core-core repulsion = 9886.059627 eV Total energy + Delta-G solvation = -2417.319359 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.37693 -36.86952 -36.18002 -33.82978 -32.36507 -29.94073 -29.05159 -25.67431 -22.46830 -21.99243 -20.94566 -18.13327 -16.45777 -16.07836 -15.39372 -15.19222 -14.76159 -13.87926 -13.33768 -12.61383 -12.27786 -11.88585 -11.80663 -11.47838 -11.13230 -11.00325 -10.63226 -10.38680 -10.11268 -10.00844 -9.58118 -9.21602 -8.28527 -7.48371 -7.20635 -4.84665 1.87720 1.96490 2.07580 2.80645 2.84748 2.87274 3.45274 3.52132 3.66804 4.10048 4.92223 5.11944 5.68300 5.86206 6.24089 6.42798 6.64845 6.88521 6.94048 7.03248 7.31965 7.44382 7.73227 8.01550 8.13042 8.32565 8.86054 9.65472 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.087009 B = 0.006465 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.726966 B = 4329.713923 C = 4582.891004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.428 4.428 8 H 0.094 0.906 9 C 0.095 3.905 10 C -0.048 4.048 11 C -0.124 4.124 12 C 0.219 3.781 13 N -0.556 5.556 14 C 0.262 3.738 15 Cl 0.020 6.980 16 N -0.361 5.361 17 N -0.207 5.207 18 C -0.109 4.109 19 H 0.293 0.707 20 H 0.150 0.850 21 H 0.134 0.866 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 0.055 1.398 1.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.148 4.148 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.457 4.457 8 H 0.112 0.888 9 C 0.089 3.911 10 C -0.073 4.073 11 C -0.145 4.145 12 C -0.030 4.030 13 N -0.292 5.292 14 C -0.043 4.043 15 Cl 0.047 6.953 16 N -0.204 5.204 17 N 0.023 4.977 18 C -0.241 4.241 19 H 0.104 0.896 20 H 0.168 0.832 21 H 0.152 0.848 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.546 -0.502 1.168 1.384 hybrid contribution 0.258 0.654 -0.089 0.708 sum 0.804 0.151 1.078 1.354 Atomic orbital electron populations 1.69758 1.07810 1.30901 1.32153 1.26061 0.94977 1.02170 0.91549 0.86055 0.79992 0.78631 0.80527 1.18478 1.19876 1.18308 1.19421 0.98165 0.89736 1.38411 0.88840 1.18416 0.91263 0.90891 0.90489 1.22802 0.94268 0.97112 0.93104 1.19931 1.02265 0.87799 1.04550 1.21118 0.89854 0.93259 0.98785 1.70263 1.30807 0.98116 1.29968 1.23514 0.93524 0.88545 0.98670 1.98331 1.97532 1.01890 1.97570 1.78333 1.25339 0.85119 1.31588 1.46688 1.17599 1.04766 1.28658 1.21390 1.07151 0.80864 1.14648 0.89613 0.83214 0.84829 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.70 10.87 55.54 0.60 -16.10 14 2 C 0.07 1.52 5.21 -17.35 -0.09 1.43 14 3 Si 0.92 15.55 29.59 -169.99 -5.03 10.52 14 4 H -0.26 -4.40 7.11 56.52 0.40 -4.00 14 5 H -0.27 -4.52 7.11 56.52 0.40 -4.12 14 6 H -0.26 -4.34 7.11 56.52 0.40 -3.94 14 7 C -0.43 -9.46 9.07 -37.82 -0.34 -9.80 14 8 H 0.09 1.95 7.90 -52.49 -0.41 1.53 14 9 C 0.10 2.20 5.70 -104.96 -0.60 1.60 14 10 C -0.05 -1.04 8.88 -37.19 -0.33 -1.37 14 11 C -0.12 -2.67 10.06 -39.44 -0.40 -3.07 14 12 C 0.22 5.29 7.85 -156.15 -1.23 4.06 14 13 N -0.56 -13.43 11.26 -10.96 -0.12 -13.55 14 14 C 0.26 6.03 8.79 -91.87 -0.81 5.22 14 15 Cl 0.02 0.36 29.33 -51.86 -1.52 -1.16 14 16 N -0.36 -8.81 12.77 31.63 0.40 -8.41 14 17 N -0.21 -5.11 3.85 -11.34 -0.04 -5.16 14 18 C -0.11 -2.55 11.03 -15.55 -0.17 -2.72 14 19 H 0.29 5.63 8.30 -40.82 -0.34 5.29 14 20 H 0.15 3.14 6.27 -52.49 -0.33 2.81 14 21 H 0.13 2.49 8.06 -52.48 -0.42 2.07 14 22 H 0.15 3.18 8.06 -52.49 -0.42 2.76 14 LS Contribution 224.17 15.07 3.38 3.38 Total: -1.00 -25.72 224.17 -7.02 -32.74 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -0.72 Total: 2.40 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.96 Total: -4.65 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.84 Total: -43.22 kcal Atomic # 14 Polarization: 15.55 SS G_CDS: -5.03 Total: 10.52 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.16 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -25.72 -7.02 -32.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053725.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.850 kcal (2) G-P(sol) polarization free energy of solvation -25.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds