Wall clock time and date at job start Mon Mar 30 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47218 * 2 1 4 4 C 1.46900 * 110.99721 * 160.28688 * 3 2 1 5 5 C 1.52997 * 109.47035 * 287.96558 * 4 3 2 6 6 C 1.46897 * 110.99510 * 284.24123 * 3 2 1 7 7 C 1.50703 * 109.46551 * 169.99906 * 6 3 2 8 8 C 1.35976 * 125.46969 * 95.02522 * 7 6 3 9 9 C 1.39305 * 108.08823 * 179.97438 * 8 7 6 10 10 C 1.39742 * 107.05571 * 0.02562 * 9 8 7 11 11 C 1.39949 * 126.36021 * 179.97438 * 10 9 8 12 12 H 1.07992 * 120.00487 * 180.02562 * 11 10 9 13 13 C 1.40067 * 119.99616 * 0.02562 * 11 10 9 14 14 N 1.30869 * 120.00161 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00134 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47099 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47123 * 119.99739 * 15 13 11 18 18 H 1.48498 * 109.47423 * 239.99882 * 15 13 11 19 19 N 1.36161 * 125.47919 * 274.71670 * 7 6 3 20 20 H 0.97009 * 125.74033 * 359.97438 * 19 7 6 21 21 H 1.08999 * 109.46826 * 65.49530 * 1 2 3 22 22 H 1.08999 * 109.47314 * 185.50292 * 1 2 3 23 23 H 1.09003 * 109.46911 * 305.50072 * 1 2 3 24 24 H 1.09002 * 109.46892 * 239.99627 * 2 1 3 25 25 H 1.09004 * 109.46704 * 120.00292 * 2 1 3 26 26 H 1.08996 * 109.46900 * 47.96959 * 4 3 2 27 27 H 1.09002 * 109.46496 * 167.96548 * 4 3 2 28 28 H 1.08998 * 109.46769 * 179.09654 * 5 4 3 29 29 H 1.09005 * 109.46984 * 299.08708 * 5 4 3 30 30 H 1.08994 * 109.47309 * 59.09682 * 5 4 3 31 31 H 1.09000 * 109.47687 * 50.00661 * 6 3 2 32 32 H 1.08994 * 109.47386 * 289.99751 * 6 3 2 33 33 H 1.07996 * 125.95552 * 359.97438 * 8 7 6 34 34 H 1.08005 * 126.47392 * 180.02562 * 9 8 7 35 35 H 0.96995 * 120.00349 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4125 1.4509 0.4626 5 6 3.4626 1.1864 1.9687 6 6 1.8771 1.9937 -1.3293 7 6 2.1546 3.4721 -1.2371 8 6 3.3520 4.0671 -1.4848 9 6 3.2013 5.4386 -1.2928 10 6 1.8724 5.6567 -0.9196 11 6 1.2848 6.8928 -0.6275 12 1 0.2429 6.9428 -0.3480 13 6 2.0482 8.0650 -0.6976 14 7 3.3109 8.0044 -1.0358 15 14 1.2639 9.7151 -0.3084 16 1 -0.1644 9.5132 0.0448 17 1 1.9724 10.3422 0.8362 18 1 1.3602 10.6014 -1.4959 19 7 1.2453 4.4272 -0.8982 20 1 0.3140 4.2699 -0.6770 21 1 -0.3633 0.4262 -0.9351 22 1 -0.3634 -1.0229 0.0985 23 1 -0.3633 0.5968 0.8367 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.0043 0.6984 -0.0584 27 1 3.8181 2.4408 0.2538 28 1 4.4976 1.2194 2.3091 29 1 2.8840 1.9485 2.4909 30 1 3.0421 0.2031 2.1791 31 1 0.8620 1.8367 -1.6939 32 1 2.5857 1.5332 -2.0177 33 1 4.2612 3.5641 -1.7790 34 1 3.9669 6.1913 -1.4102 35 1 3.8397 8.8161 -1.0841 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:15 Heat of formation + Delta-G solvation = 31.653112 kcal Electronic energy + Delta-G solvation = -15196.531436 eV Core-core repulsion = 12808.676430 eV Total energy + Delta-G solvation = -2387.855006 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13784 -37.25863 -33.37091 -31.56177 -30.36915 -29.08174 -27.87668 -25.79222 -22.76973 -22.64157 -20.22517 -18.95871 -18.70285 -17.13485 -15.60717 -15.17021 -15.02023 -14.43799 -13.79963 -13.60200 -12.86018 -12.48097 -12.26283 -11.92741 -11.77871 -11.69983 -11.51288 -11.29831 -11.23696 -11.13253 -11.11635 -10.67765 -10.34796 -10.30624 -9.74648 -9.47719 -9.18293 -7.88856 -7.09078 -6.58034 -6.37769 -4.01183 3.05016 3.17568 3.22052 3.72471 4.06819 4.40642 4.79337 5.03654 5.18703 5.41625 5.44272 5.60509 5.62343 5.68486 5.79927 5.88194 5.99569 6.05442 6.09804 6.18949 6.32707 6.45464 6.55118 6.57318 6.94562 7.30486 7.41023 7.56636 7.61842 7.95146 8.08795 8.39453 8.50710 9.02074 9.18001 9.38845 9.61359 10.51538 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.041787 B = 0.006429 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.901624 B = 4353.996836 C = 4517.677231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.536 5.536 4 C 0.047 3.953 5 C -0.142 4.142 6 C 0.144 3.856 7 C -0.094 4.094 8 C -0.171 4.171 9 C -0.287 4.287 10 C 0.212 3.788 11 C -0.455 4.455 12 H 0.066 0.934 13 C 0.072 3.928 14 N -0.804 5.804 15 Si 0.918 3.082 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.583 5.583 20 H 0.389 0.611 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -10.097 2.068 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.261 5.261 4 C -0.080 4.080 5 C -0.200 4.200 6 C 0.017 3.983 7 C -0.201 4.201 8 C -0.199 4.199 9 C -0.310 4.310 10 C 0.101 3.899 11 C -0.491 4.491 12 H 0.084 0.916 13 C -0.143 4.143 14 N -0.433 5.433 15 Si 0.743 3.257 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.202 1.202 19 N -0.183 5.183 20 H 0.222 0.778 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.210 -9.779 2.368 10.301 hybrid contribution -0.227 0.166 -0.287 0.402 sum -2.437 -9.613 2.081 10.133 Atomic orbital electron populations 1.21757 0.95444 1.00701 1.02348 1.22100 0.95901 0.90175 1.00056 1.62208 1.20782 1.15918 1.27169 1.22094 0.88505 1.02461 0.94963 1.21753 1.00845 1.01109 0.96306 1.20213 0.99427 0.90697 0.87988 1.19150 0.91638 0.88215 1.21088 1.20287 0.94564 0.95818 1.09204 1.21752 0.97216 0.93855 1.18194 1.18129 0.91368 0.83115 0.97307 1.18435 0.97241 0.89666 1.43721 0.91556 1.25582 0.94519 1.00475 0.93760 1.69790 1.06972 1.29110 1.37405 0.86116 0.79822 0.81267 0.78459 1.19012 1.20173 1.20186 1.41813 1.09810 1.06625 1.60102 0.77846 0.92988 0.93015 0.91961 0.95502 0.91328 0.96055 0.88796 0.92898 0.92018 0.93613 0.92068 0.94783 0.88803 0.83143 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.94 37.16 0.37 -1.41 16 2 C 0.05 0.62 5.55 -3.82 -0.02 0.60 16 3 N -0.54 -8.99 4.38 -236.07 -1.03 -10.02 16 4 C 0.05 0.78 5.55 -3.83 -0.02 0.76 16 5 C -0.14 -2.05 9.99 37.16 0.37 -1.67 16 6 C 0.14 2.63 5.32 -4.98 -0.03 2.61 16 7 C -0.09 -2.13 5.96 -81.48 -0.49 -2.61 16 8 C -0.17 -4.25 9.25 -40.00 -0.37 -4.62 16 9 C -0.29 -8.06 9.80 -38.62 -0.38 -8.43 16 10 C 0.21 5.87 6.89 -83.87 -0.58 5.30 16 11 C -0.45 -12.51 9.45 -38.26 -0.36 -12.87 16 12 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 13 C 0.07 1.89 5.50 -17.28 -0.09 1.79 16 14 N -0.80 -21.88 10.26 55.56 0.57 -21.31 16 15 Si 0.92 19.65 29.56 -169.99 -5.03 14.63 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 N -0.58 -14.02 6.15 -6.67 -0.04 -14.07 16 20 H 0.39 8.36 8.96 -40.82 -0.37 8.00 16 21 H 0.05 0.65 6.97 -51.93 -0.36 0.29 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.03 0.35 8.00 -51.93 -0.42 -0.06 16 25 H 0.07 0.86 6.24 -51.93 -0.32 0.54 16 26 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 27 H 0.09 1.83 5.80 -51.93 -0.30 1.53 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.58 6.52 -51.93 -0.34 0.24 16 31 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 32 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 33 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 34 H 0.15 4.45 5.70 -52.48 -0.30 4.15 16 35 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 282.72 15.07 4.26 4.26 Total: -1.00 -28.78 282.72 -8.12 -36.90 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.25 Total: 10.17 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.60 Total: -20.56 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.51 Total: -45.40 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.78 -8.12 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.555 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds