Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47066 * 299.99915 * 3 2 1 6 6 H 1.48502 * 109.47224 * 59.99937 * 3 2 1 7 7 C 1.40083 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99795 * 163.21336 * 7 2 1 9 9 C 1.40727 * 120.00004 * 343.21953 * 7 2 1 10 10 C 1.46745 * 120.79875 * 336.32444 * 9 7 2 11 11 C 1.34384 * 119.34179 * 180.25351 * 10 9 7 12 12 N 1.36592 * 121.15843 * 359.44782 * 11 10 9 13 13 N 1.40457 * 132.23828 * 180.23227 * 12 11 10 14 14 C 1.31518 * 107.14640 * 180.29775 * 13 12 11 15 15 Cl 1.73601 * 125.14917 * 180.02562 * 14 13 12 16 16 N 1.32296 * 109.69804 * 359.97438 * 14 13 12 17 17 C 1.33353 * 109.68075 * 0.02562 * 16 14 13 18 18 C 1.39803 * 132.12589 * 180.02562 * 17 16 14 19 19 H 0.97003 * 120.00114 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.32636 * 359.97438 * 10 9 7 21 21 H 1.07999 * 119.41691 * 179.72426 * 11 10 9 22 22 H 1.08002 * 120.53347 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0078 -1.2131 0.0005 8 1 3.0533 -1.2331 -0.2696 9 6 1.3492 -2.4058 0.3529 10 6 0.1456 -2.3797 1.1920 11 6 -0.4572 -3.5366 1.5150 12 7 0.0245 -4.7336 1.0669 13 7 -0.4117 -6.0558 1.2520 14 6 0.4246 -6.8348 0.6012 15 17 0.3199 -8.5656 0.5186 16 7 1.3570 -6.0994 0.0180 17 6 1.1426 -4.8100 0.2824 18 6 1.8273 -3.6497 -0.0910 19 1 -0.4850 0.8401 0.0004 20 1 -0.2493 -1.4405 1.5502 21 1 -1.3404 -3.5191 2.1362 22 1 2.7100 -3.7089 -0.7106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261066617.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = 92.225969 kcal Electronic energy + Delta-G solvation = -12297.264971 eV Core-core repulsion = 9879.820572 eV Total energy + Delta-G solvation = -2417.444399 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17009 -36.84174 -36.15931 -34.08630 -32.02241 -29.71481 -28.83490 -26.18352 -22.43131 -21.82114 -20.81244 -17.93450 -16.67265 -15.99182 -15.45821 -15.05803 -14.53693 -13.65386 -13.45737 -12.71049 -12.24418 -11.87979 -11.59237 -11.50995 -11.15556 -11.02661 -10.61402 -10.38903 -10.05968 -9.95836 -9.46342 -9.03526 -8.23702 -7.51901 -7.20239 -5.01774 1.89589 2.05048 2.14272 2.78568 2.81125 2.87074 3.50875 3.57615 3.58864 4.06122 5.00738 5.24230 5.72089 6.01926 6.38699 6.50810 6.61321 6.76414 7.19301 7.27068 7.39931 7.44588 7.83640 8.04741 8.14618 8.28769 8.99714 9.51522 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.087159 B = 0.006447 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.176590 B = 4342.053646 C = 4594.785320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.924 3.076 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.409 4.409 8 H 0.098 0.902 9 C 0.140 3.860 10 C -0.131 4.131 11 C 0.076 3.924 12 N -0.328 5.328 13 N -0.375 5.375 14 C 0.298 3.702 15 Cl 0.017 6.983 16 N -0.597 5.597 17 C 0.337 3.663 18 C -0.294 4.294 19 H 0.294 0.706 20 H 0.158 0.842 21 H 0.144 0.856 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 0.878 1.799 2.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.152 4.152 3 Si 0.747 3.253 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.438 4.438 8 H 0.116 0.884 9 C 0.132 3.868 10 C -0.154 4.154 11 C -0.047 4.047 12 N -0.105 5.105 13 N -0.214 5.214 14 C -0.009 4.009 15 Cl 0.044 6.956 16 N -0.335 5.335 17 C 0.097 3.903 18 C -0.323 4.323 19 H 0.106 0.894 20 H 0.175 0.825 21 H 0.162 0.838 22 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.699 0.310 1.988 2.130 hybrid contribution 0.153 0.681 -0.061 0.701 sum -0.546 0.991 1.927 2.235 Atomic orbital electron populations 1.69703 1.08123 1.31088 1.29809 1.26271 0.94985 1.02645 0.91253 0.85960 0.81115 0.79028 0.79201 1.17639 1.19292 1.19047 1.19787 0.98541 0.90185 1.35317 0.88369 1.18632 0.88997 0.92276 0.86913 1.22402 0.97787 0.95746 0.99463 1.20983 1.00602 0.81390 1.01706 1.47020 1.21463 1.04223 1.37789 1.78281 1.25125 0.85664 1.32319 1.23696 0.92624 0.88287 0.96247 1.98334 1.97725 1.02124 1.97384 1.70546 1.29297 0.99559 1.34112 1.21174 0.86688 0.92293 0.90122 1.19888 1.08481 0.87201 1.16706 0.89429 0.82507 0.83847 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -15.91 10.87 55.55 0.60 -15.31 14 2 C 0.07 1.47 5.22 -17.33 -0.09 1.38 14 3 Si 0.92 15.12 29.59 -169.99 -5.03 10.09 14 4 H -0.25 -4.16 7.11 56.52 0.40 -3.76 14 5 H -0.27 -4.39 7.11 56.52 0.40 -3.99 14 6 H -0.27 -4.27 7.11 56.52 0.40 -3.87 14 7 C -0.41 -9.04 9.07 -37.95 -0.34 -9.38 14 8 H 0.10 2.07 7.90 -52.49 -0.41 1.65 14 9 C 0.14 3.28 5.72 -104.68 -0.60 2.68 14 10 C -0.13 -2.85 8.83 -37.51 -0.33 -3.18 14 11 C 0.08 1.64 11.15 -16.79 -0.19 1.45 14 12 N -0.33 -7.98 3.90 -12.43 -0.05 -8.03 14 13 N -0.38 -9.08 12.79 31.61 0.40 -8.68 14 14 C 0.30 6.98 8.78 -91.96 -0.81 6.17 14 15 Cl 0.02 0.32 29.33 -51.86 -1.52 -1.20 14 16 N -0.60 -15.09 11.26 -11.17 -0.13 -15.22 14 17 C 0.34 8.56 7.83 -156.05 -1.22 7.34 14 18 C -0.29 -7.14 9.94 -38.16 -0.38 -7.52 14 19 H 0.29 5.41 8.29 -40.82 -0.34 5.08 14 20 H 0.16 3.23 6.26 -52.49 -0.33 2.90 14 21 H 0.14 2.61 8.06 -52.49 -0.42 2.19 14 22 H 0.13 2.93 8.06 -52.49 -0.42 2.50 14 LS Contribution 224.19 15.07 3.38 3.38 Total: -1.00 -26.29 224.19 -7.02 -33.32 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -0.72 Total: 2.71 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.96 Total: -1.06 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.83 Total: -47.23 kcal Atomic # 14 Polarization: 15.12 SS G_CDS: -5.03 Total: 10.09 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.52 Total: -1.20 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -26.29 -7.02 -33.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066617.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.542 kcal (2) G-P(sol) polarization free energy of solvation -26.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds