Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47066 * 299.99915 * 3 2 1 6 6 H 1.48502 * 109.47224 * 59.99937 * 3 2 1 7 7 C 1.40083 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99795 * 163.21336 * 7 2 1 9 9 C 1.40727 * 120.00004 * 343.21953 * 7 2 1 10 10 C 1.46745 * 120.79875 * 336.32444 * 9 7 2 11 11 C 1.34384 * 119.34179 * 180.25351 * 10 9 7 12 12 N 1.36592 * 121.15843 * 359.44782 * 11 10 9 13 13 N 1.40457 * 132.23828 * 180.23227 * 12 11 10 14 14 C 1.31518 * 107.14640 * 180.29775 * 13 12 11 15 15 Cl 1.73601 * 125.14917 * 180.02562 * 14 13 12 16 16 N 1.32296 * 109.69804 * 359.97438 * 14 13 12 17 17 C 1.33353 * 109.68075 * 0.02562 * 16 14 13 18 18 C 1.39803 * 132.12589 * 180.02562 * 17 16 14 19 19 H 0.97003 * 120.00114 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.32636 * 359.97438 * 10 9 7 21 21 H 1.07999 * 119.41691 * 179.72426 * 11 10 9 22 22 H 1.08002 * 120.53347 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0078 -1.2131 0.0005 8 1 3.0533 -1.2331 -0.2696 9 6 1.3492 -2.4058 0.3529 10 6 0.1456 -2.3797 1.1920 11 6 -0.4572 -3.5366 1.5150 12 7 0.0245 -4.7336 1.0669 13 7 -0.4117 -6.0558 1.2520 14 6 0.4246 -6.8348 0.6012 15 17 0.3199 -8.5656 0.5186 16 7 1.3570 -6.0994 0.0180 17 6 1.1426 -4.8100 0.2824 18 6 1.8273 -3.6497 -0.0910 19 1 -0.4850 0.8401 0.0004 20 1 -0.2493 -1.4405 1.5502 21 1 -1.3404 -3.5191 2.1362 22 1 2.7100 -3.7089 -0.7106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066617.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = 78.502042 kcal Electronic energy + Delta-G solvation = -12297.860085 eV Core-core repulsion = 9879.820572 eV Total energy + Delta-G solvation = -2418.039513 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.95249 -38.53303 -37.79790 -35.77385 -33.79424 -31.48380 -30.59020 -27.93047 -24.19408 -23.56061 -22.58558 -19.64553 -18.44422 -17.67674 -17.08275 -16.86210 -16.14082 -15.33987 -15.11934 -14.27830 -13.91350 -13.51170 -13.20330 -12.99195 -12.83874 -12.55955 -12.11795 -11.99186 -11.74181 -11.64574 -11.12044 -10.87077 -9.99545 -9.19369 -8.90956 -6.77464 0.21170 0.32884 0.38108 1.43792 1.48677 1.62887 1.82288 1.83744 2.16195 2.38655 3.25264 3.51213 4.04397 4.26703 4.65516 4.82402 4.93904 5.04103 5.43442 5.50729 5.61188 5.71680 6.10690 6.30921 6.40524 6.56046 7.18747 7.94938 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.087159 B = 0.006447 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.176590 B = 4342.053646 C = 4594.785320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.041 3.959 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.103 0.897 9 C 0.118 3.882 10 C -0.133 4.133 11 C 0.073 3.927 12 N -0.342 5.342 13 N -0.389 5.389 14 C 0.289 3.711 15 Cl 0.057 6.943 16 N -0.623 5.623 17 C 0.316 3.684 18 C -0.320 4.320 19 H 0.310 0.690 20 H 0.169 0.831 21 H 0.176 0.824 22 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 2.546 2.082 3.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.182 4.182 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.443 4.443 8 H 0.121 0.879 9 C 0.110 3.890 10 C -0.155 4.155 11 C -0.049 4.049 12 N -0.120 5.120 13 N -0.228 5.228 14 C -0.017 4.017 15 Cl 0.084 6.916 16 N -0.363 5.363 17 C 0.077 3.923 18 C -0.349 4.349 19 H 0.122 0.878 20 H 0.186 0.814 21 H 0.193 0.807 22 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.899 1.960 2.278 3.137 hybrid contribution 0.179 0.257 -0.187 0.365 sum -0.720 2.218 2.091 3.132 Atomic orbital electron populations 1.69681 1.09310 1.33101 1.27790 1.27087 0.95666 1.05192 0.90246 0.84875 0.79455 0.74457 0.79529 1.17787 1.18815 1.17960 1.20160 0.98950 0.90808 1.34377 0.87905 1.18944 0.89980 0.92416 0.87708 1.22489 0.97416 0.96282 0.99348 1.21487 1.01312 0.80579 1.01515 1.47147 1.21607 1.04807 1.38388 1.78169 1.25735 0.85846 1.33003 1.24192 0.91906 0.90202 0.95408 1.98336 1.97576 0.98467 1.97201 1.70537 1.30406 0.99993 1.35324 1.21389 0.87461 0.92651 0.90807 1.19948 1.09129 0.87684 1.18159 0.87839 0.81380 0.80688 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -30.66 10.87 21.85 0.24 -30.42 14 2 C 0.04 1.59 5.22 85.30 0.44 2.03 14 3 Si 1.00 28.68 29.59 68.60 2.03 30.71 14 4 H -0.25 -7.36 7.11 99.48 0.71 -6.66 14 5 H -0.26 -7.42 7.11 99.48 0.71 -6.71 14 6 H -0.26 -6.95 7.11 99.48 0.71 -6.25 14 7 C -0.42 -18.00 9.07 23.33 0.21 -17.79 14 8 H 0.10 4.26 7.90 -2.91 -0.02 4.24 14 9 C 0.12 5.53 5.72 -19.90 -0.11 5.42 14 10 C -0.13 -5.69 8.83 23.61 0.21 -5.48 14 11 C 0.07 3.09 11.15 83.07 0.93 4.02 14 12 N -0.34 -16.75 3.90 -193.25 -0.75 -17.50 14 13 N -0.39 -18.83 12.79 -53.91 -0.69 -19.52 14 14 C 0.29 13.59 8.78 180.82 1.59 15.18 14 15 Cl 0.06 2.05 29.33 -2.72 -0.08 1.97 14 16 N -0.62 -32.08 11.26 -189.25 -2.13 -34.21 14 17 C 0.32 16.38 7.83 133.68 1.05 17.43 14 18 C -0.32 -15.95 9.94 23.19 0.23 -15.72 14 19 H 0.31 10.54 8.29 -92.71 -0.77 9.77 14 20 H 0.17 6.70 6.26 -2.91 -0.02 6.68 14 21 H 0.18 6.10 8.06 -2.91 -0.02 6.07 14 22 H 0.12 5.92 8.06 -2.91 -0.02 5.90 14 Total: -1.00 -55.25 224.19 4.42 -50.83 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.26 Total: 13.05 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.54 Total: 5.10 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -3.34 Total: -101.65 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: 2.03 Total: 30.71 kcal Atomic # 17 Polarization: 2.05 SS G_CDS: -0.08 Total: 1.97 kcal Total: -55.25 4.42 -50.83 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066617.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.330 kcal (2) G-P(sol) polarization free energy of solvation -55.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds