Wall clock time and date at job start Mon Mar 30 2020 03:19:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31334 * 1
3 3 Si 1.86803 * 119.99981 * 2 1
4 4 H 1.48496 * 109.47141 * 239.99863 * 3 2 1
5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46993 * 120.00140 * 3 2 1
7 7 C 1.38934 * 120.00173 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99838 * 179.97438 * 7 2 1
9 9 N 1.37374 * 119.99962 * 0.27675 * 7 2 1
10 10 N 1.40450 * 126.92628 * 359.74529 * 9 7 2
11 11 C 1.30789 * 106.99934 * 179.97438 * 10 9 7
12 12 C 1.50698 * 125.32354 * 180.02562 * 11 10 9
13 13 F 1.39900 * 109.47221 * 105.00693 * 12 11 10
14 14 F 1.39904 * 109.47274 * 225.00497 * 12 11 10
15 15 F 1.39900 * 109.47655 * 345.00305 * 12 11 10
16 16 N 1.33385 * 109.34992 * 0.02562 * 11 10 9
17 17 C 1.31410 * 109.82053 * 359.71701 * 16 11 10
18 18 O 1.35347 * 126.15972 * 180.29555 * 17 16 11
19 19 H 0.97005 * 119.99984 * 359.97438 * 1 2 3
20 20 H 0.96694 * 114.00105 * 270.17427 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3133 0.0000 0.0000
3 14 2.2473 1.6178 0.0000
4 1 3.1011 1.6964 -1.2124
5 1 1.2823 2.7465 0.0006
6 1 3.1011 1.6964 1.2125
7 6 2.0080 -1.2032 -0.0005
8 1 3.0881 -1.2031 -0.0010
9 7 1.3212 -2.3929 -0.0068
10 7 -0.0730 -2.5623 -0.0081
11 6 -0.3017 -3.8500 -0.0153
12 6 -1.6647 -4.4929 -0.0198
13 9 -1.9399 -4.9938 -1.2968
14 9 -1.6893 -5.5404 0.9072
15 9 -2.6303 -3.5415 0.3260
16 7 0.8601 -4.5052 -0.0181
17 6 1.8555 -3.6473 -0.0188
18 8 3.1738 -3.9536 -0.0270
19 1 -0.4850 0.8401 0.0004
20 1 3.5608 -4.0497 0.8539
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261076936.mol2 20
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:53
Heat of formation + Delta-G solvation = -101.774909 kcal
Electronic energy + Delta-G solvation = -15313.591839 eV
Core-core repulsion = 11905.169025 eV
Total energy + Delta-G solvation = -3408.422814 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 223.031 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-49.41520 -46.95427 -46.92420 -40.70034 -36.49079 -34.38529 -31.50225 -29.53007
-26.99311 -24.74452 -21.41218 -20.64315 -18.51159 -17.91441 -17.83534 -17.30041
-16.67514 -15.34771 -14.87161 -14.34670 -13.84288 -13.72817 -13.37798 -13.19559
-13.10562 -13.08686 -12.41449 -12.20434 -11.68623 -11.52187 -11.33010 -10.83721
-10.25527 -10.03843 -8.86186 -8.84826 -8.33873 -6.99927 -4.81928 2.59279
2.84961 2.92323 3.03445 3.15875 3.35768 3.52548 3.87513 4.23151
4.59484 4.86345 5.18503 5.40115 6.10638 6.69291 6.94647 7.35697
7.58203 8.01054 8.25195 8.86327 9.26501 9.95575
Molecular weight = 223.03amu
Principal moments of inertia in cm(-1)
A = 0.036289 B = 0.010386 C = 0.008509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 771.399444 B = 2695.239639 C = 3289.668498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.749 5.749
2 C 0.045 3.955
3 Si 0.947 3.053
4 H -0.262 1.262
5 H -0.272 1.272
6 H -0.262 1.262
7 C -0.301 4.301
8 H 0.132 0.868
9 N -0.137 5.137
10 N -0.231 5.231
11 C 0.038 3.962
12 C 0.582 3.418
13 F -0.177 7.177
14 F -0.175 7.175
15 F -0.166 7.166
16 N -0.514 5.514
17 C 0.273 3.727
18 O -0.436 6.436
19 H 0.287 0.713
20 H 0.379 0.621
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.870 -0.604 1.626 1.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.374 5.374
2 C -0.177 4.177
3 Si 0.769 3.231
4 H -0.186 1.186
5 H -0.197 1.197
6 H -0.186 1.186
7 C -0.438 4.438
8 H 0.149 0.851
9 N 0.076 4.924
10 N -0.079 5.079
11 C -0.237 4.237
12 C 0.525 3.475
13 F -0.159 7.159
14 F -0.156 7.156
15 F -0.148 7.148
16 N -0.255 5.255
17 C -0.026 4.026
18 O -0.233 6.233
19 H 0.097 0.903
20 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges 0.248 -0.484 1.013 1.149
hybrid contribution 0.631 0.677 0.502 1.053
sum 0.879 0.193 1.514 1.761
Atomic orbital electron populations
1.70169 1.06464 1.29658 1.31120 1.25861 0.95922 1.01054 0.94813
0.85680 0.79194 0.78231 0.80027 1.18597 1.19654 1.18642 1.20316
0.92506 0.80241 1.50755 0.85061 1.47108 1.03602 1.05743 1.35924
1.79033 0.89465 1.11919 1.27438 1.22759 0.92584 0.91530 1.16850
1.16325 0.82470 0.75211 0.73448 1.93173 1.94461 1.87999 1.40246
1.93163 1.96786 1.59167 1.66484 1.93195 1.65166 1.64436 1.91980
1.69830 0.96469 1.32368 1.26823 1.20607 0.85069 0.81337 1.15566
1.84858 1.15483 1.90383 1.32609 0.90258 0.76705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.75 -19.10 11.89 55.49 0.66 -18.44 14
2 C 0.04 1.05 5.50 -17.51 -0.10 0.95 14
3 Si 0.95 17.11 29.55 -169.99 -5.02 12.08 14
4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14
5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14
6 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14
7 C -0.30 -7.41 10.24 -14.81 -0.15 -7.56 14
8 H 0.13 2.87 7.83 -52.49 -0.41 2.46 14
9 N -0.14 -3.66 3.77 -12.79 -0.05 -3.71 14
10 N -0.23 -6.41 10.39 32.46 0.34 -6.07 14
11 C 0.04 0.98 7.40 -156.66 -1.16 -0.18 14
12 C 0.58 12.95 3.57 36.00 0.13 13.08 14
13 F -0.18 -3.76 17.30 2.25 0.04 -3.72 14
14 F -0.17 -3.62 17.30 2.25 0.04 -3.58 14
15 F -0.17 -3.63 17.15 2.25 0.04 -3.59 14
16 N -0.51 -13.28 11.22 -11.75 -0.13 -13.42 14
17 C 0.27 6.82 9.13 -88.41 -0.81 6.01 14
18 O -0.44 -8.99 13.56 -17.73 -0.24 -9.23 14
19 H 0.29 6.60 8.31 -40.82 -0.34 6.26 14
20 H 0.38 5.64 9.06 45.56 0.41 6.05 14
LS Contribution 214.47 15.07 3.23 3.23
Total: -1.00 -29.90 214.47 -2.32 -32.22
By element:
Atomic # 1 Polarization: 1.05 SS G_CDS: 0.87 Total: 1.91 kcal
Atomic # 6 Polarization: 14.39 SS G_CDS: -2.09 Total: 12.31 kcal
Atomic # 7 Polarization: -42.45 SS G_CDS: 0.82 Total: -41.64 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: -0.24 Total: -9.23 kcal
Atomic # 9 Polarization: -11.01 SS G_CDS: 0.12 Total: -10.89 kcal
Atomic # 14 Polarization: 17.11 SS G_CDS: -5.02 Total: 12.08 kcal
Total LS contribution 3.23 Total: 3.23 kcal
Total: -29.90 -2.32 -32.22 kcal
The number of atoms in the molecule is 20
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261076936.mol2 20
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.559 kcal
(2) G-P(sol) polarization free energy of solvation -29.900 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.458 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds