Wall clock time and date at job start Mon Mar 30 2020 03:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31334 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99863 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00140 * 3 2 1 7 7 C 1.38934 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.37374 * 119.99962 * 0.27675 * 7 2 1 10 10 N 1.40450 * 126.92628 * 359.74529 * 9 7 2 11 11 C 1.30789 * 106.99934 * 179.97438 * 10 9 7 12 12 C 1.50698 * 125.32354 * 180.02562 * 11 10 9 13 13 F 1.39900 * 109.47221 * 105.00693 * 12 11 10 14 14 F 1.39904 * 109.47274 * 225.00497 * 12 11 10 15 15 F 1.39900 * 109.47655 * 345.00305 * 12 11 10 16 16 N 1.33385 * 109.34992 * 0.02562 * 11 10 9 17 17 C 1.31410 * 109.82053 * 359.71701 * 16 11 10 18 18 O 1.35347 * 126.15972 * 180.29555 * 17 16 11 19 19 H 0.97005 * 119.99984 * 359.97438 * 1 2 3 20 20 H 0.96694 * 114.00105 * 270.17427 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1011 1.6964 -1.2124 5 1 1.2823 2.7465 0.0006 6 1 3.1011 1.6964 1.2125 7 6 2.0080 -1.2032 -0.0005 8 1 3.0881 -1.2031 -0.0010 9 7 1.3212 -2.3929 -0.0068 10 7 -0.0730 -2.5623 -0.0081 11 6 -0.3017 -3.8500 -0.0153 12 6 -1.6647 -4.4929 -0.0198 13 9 -1.9399 -4.9938 -1.2968 14 9 -1.6893 -5.5404 0.9072 15 9 -2.6303 -3.5415 0.3260 16 7 0.8601 -4.5052 -0.0181 17 6 1.8555 -3.6473 -0.0188 18 8 3.1738 -3.9536 -0.0270 19 1 -0.4850 0.8401 0.0004 20 1 3.5608 -4.0497 0.8539 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076936.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:53 Heat of formation + Delta-G solvation = -101.774909 kcal Electronic energy + Delta-G solvation = -15313.591839 eV Core-core repulsion = 11905.169025 eV Total energy + Delta-G solvation = -3408.422814 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 223.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.41520 -46.95427 -46.92420 -40.70034 -36.49079 -34.38529 -31.50225 -29.53007 -26.99311 -24.74452 -21.41218 -20.64315 -18.51159 -17.91441 -17.83534 -17.30041 -16.67514 -15.34771 -14.87161 -14.34670 -13.84288 -13.72817 -13.37798 -13.19559 -13.10562 -13.08686 -12.41449 -12.20434 -11.68623 -11.52187 -11.33010 -10.83721 -10.25527 -10.03843 -8.86186 -8.84826 -8.33873 -6.99927 -4.81928 2.59279 2.84961 2.92323 3.03445 3.15875 3.35768 3.52548 3.87513 4.23151 4.59484 4.86345 5.18503 5.40115 6.10638 6.69291 6.94647 7.35697 7.58203 8.01054 8.25195 8.86327 9.26501 9.95575 Molecular weight = 223.03amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.010386 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.399444 B = 2695.239639 C = 3289.668498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.045 3.955 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.301 4.301 8 H 0.132 0.868 9 N -0.137 5.137 10 N -0.231 5.231 11 C 0.038 3.962 12 C 0.582 3.418 13 F -0.177 7.177 14 F -0.175 7.175 15 F -0.166 7.166 16 N -0.514 5.514 17 C 0.273 3.727 18 O -0.436 6.436 19 H 0.287 0.713 20 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -0.604 1.626 1.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.438 4.438 8 H 0.149 0.851 9 N 0.076 4.924 10 N -0.079 5.079 11 C -0.237 4.237 12 C 0.525 3.475 13 F -0.159 7.159 14 F -0.156 7.156 15 F -0.148 7.148 16 N -0.255 5.255 17 C -0.026 4.026 18 O -0.233 6.233 19 H 0.097 0.903 20 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.248 -0.484 1.013 1.149 hybrid contribution 0.631 0.677 0.502 1.053 sum 0.879 0.193 1.514 1.761 Atomic orbital electron populations 1.70169 1.06464 1.29658 1.31120 1.25861 0.95922 1.01054 0.94813 0.85680 0.79194 0.78231 0.80027 1.18597 1.19654 1.18642 1.20316 0.92506 0.80241 1.50755 0.85061 1.47108 1.03602 1.05743 1.35924 1.79033 0.89465 1.11919 1.27438 1.22759 0.92584 0.91530 1.16850 1.16325 0.82470 0.75211 0.73448 1.93173 1.94461 1.87999 1.40246 1.93163 1.96786 1.59167 1.66484 1.93195 1.65166 1.64436 1.91980 1.69830 0.96469 1.32368 1.26823 1.20607 0.85069 0.81337 1.15566 1.84858 1.15483 1.90383 1.32609 0.90258 0.76705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.10 11.89 55.49 0.66 -18.44 14 2 C 0.04 1.05 5.50 -17.51 -0.10 0.95 14 3 Si 0.95 17.11 29.55 -169.99 -5.02 12.08 14 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 6 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14 7 C -0.30 -7.41 10.24 -14.81 -0.15 -7.56 14 8 H 0.13 2.87 7.83 -52.49 -0.41 2.46 14 9 N -0.14 -3.66 3.77 -12.79 -0.05 -3.71 14 10 N -0.23 -6.41 10.39 32.46 0.34 -6.07 14 11 C 0.04 0.98 7.40 -156.66 -1.16 -0.18 14 12 C 0.58 12.95 3.57 36.00 0.13 13.08 14 13 F -0.18 -3.76 17.30 2.25 0.04 -3.72 14 14 F -0.17 -3.62 17.30 2.25 0.04 -3.58 14 15 F -0.17 -3.63 17.15 2.25 0.04 -3.59 14 16 N -0.51 -13.28 11.22 -11.75 -0.13 -13.42 14 17 C 0.27 6.82 9.13 -88.41 -0.81 6.01 14 18 O -0.44 -8.99 13.56 -17.73 -0.24 -9.23 14 19 H 0.29 6.60 8.31 -40.82 -0.34 6.26 14 20 H 0.38 5.64 9.06 45.56 0.41 6.05 14 LS Contribution 214.47 15.07 3.23 3.23 Total: -1.00 -29.90 214.47 -2.32 -32.22 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: 0.87 Total: 1.91 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -2.09 Total: 12.31 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.82 Total: -41.64 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.24 Total: -9.23 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 0.12 Total: -10.89 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.02 Total: 12.08 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.90 -2.32 -32.22 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076936.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.559 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds