Wall clock time and date at job start Mon Mar 30 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86808 * 119.99512 * 2 1 4 4 H 1.48507 * 109.46744 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46972 * 299.99967 * 3 2 1 6 6 H 1.48495 * 109.47109 * 60.00215 * 3 2 1 7 7 C 1.40012 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.39623 * 120.00038 * 359.97438 * 7 2 1 10 10 N 1.33520 * 126.52990 * 0.79497 * 9 7 2 11 11 N 1.28620 * 109.92811 * 179.97438 * 10 9 7 12 12 C 1.33239 * 109.98705 * 359.47830 * 11 10 9 13 13 C 1.40132 * 133.03739 * 180.02562 * 12 11 10 14 14 C 1.36690 * 119.32383 * 179.69388 * 13 12 11 15 15 C 1.40186 * 119.67983 * 0.27715 * 14 13 12 16 16 Cl 1.73602 * 119.90921 * 179.97438 * 15 14 13 17 17 C 1.35624 * 120.17658 * 359.97438 * 15 14 13 18 18 N 1.35979 * 120.47879 * 0.02562 * 17 15 14 19 19 H 0.96994 * 120.00572 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.34087 * 359.97293 * 13 12 11 21 21 H 1.08005 * 120.16161 * 180.29703 * 14 13 12 22 22 H 1.07999 * 119.76053 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0090 -1.2125 -0.0005 8 1 3.0890 -1.2125 -0.0010 9 6 1.3110 -2.4217 -0.0005 10 7 -0.0155 -2.5737 -0.0149 11 7 -0.3135 -3.8249 -0.0106 12 6 0.7991 -4.5580 -0.0045 13 6 1.0341 -5.9395 0.0014 14 6 2.3212 -6.3996 0.0006 15 6 3.3848 -5.4863 -0.0002 16 17 5.0219 -6.0641 -0.0005 17 6 3.1383 -4.1527 -0.0007 18 7 1.8605 -3.6875 0.0001 19 1 -0.4851 0.8399 -0.0004 20 1 0.2067 -6.6336 0.0021 21 1 2.5179 -7.4615 0.0003 22 1 3.9627 -3.4551 -0.0009 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261080323.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:27 Heat of formation + Delta-G solvation = 86.600379 kcal Electronic energy + Delta-G solvation = -12482.991136 eV Core-core repulsion = 10065.302793 eV Total energy + Delta-G solvation = -2417.688343 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.61890 -37.24270 -35.78889 -34.00727 -32.66103 -29.66626 -28.85897 -25.74927 -23.14454 -21.95547 -21.09130 -17.88709 -16.83348 -16.10685 -15.27072 -15.09698 -14.99994 -14.01114 -13.47776 -12.49135 -12.39691 -11.93789 -11.47517 -11.47098 -11.21032 -10.68858 -10.67278 -10.42343 -10.29021 -10.03793 -9.49116 -8.80101 -8.18385 -7.31054 -6.89211 -4.71807 1.46470 2.10568 2.36513 2.90636 2.95678 3.01253 3.67338 3.90395 3.94650 4.42464 5.07304 5.08067 5.29142 5.59324 5.80171 6.23093 6.39742 6.57016 6.72067 6.93671 7.00207 7.31629 7.75991 7.90911 8.43966 8.52235 10.02718 10.29156 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.035230 B = 0.009145 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.594211 B = 3060.931531 C = 3845.675059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.073 3.927 3 Si 0.928 3.072 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.430 4.430 8 H 0.091 0.909 9 C 0.321 3.679 10 N -0.302 5.302 11 N -0.273 5.273 12 C 0.071 3.929 13 C -0.037 4.037 14 C -0.139 4.139 15 C -0.105 4.105 16 Cl -0.074 7.074 17 C 0.127 3.873 18 N -0.437 5.437 19 H 0.285 0.715 20 H 0.140 0.860 21 H 0.132 0.868 22 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 -5.079 0.023 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.154 4.154 3 Si 0.751 3.249 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.109 0.891 9 C 0.084 3.916 10 N -0.149 5.149 11 N -0.119 5.119 12 C -0.176 4.176 13 C -0.059 4.059 14 C -0.164 4.164 15 C -0.138 4.138 16 Cl -0.046 7.046 17 C 0.000 4.000 18 N -0.125 5.125 19 H 0.096 0.904 20 H 0.158 0.842 21 H 0.149 0.851 22 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.842 -4.475 0.011 7.359 hybrid contribution 1.989 0.330 0.014 2.017 sum 7.831 -4.144 0.025 8.860 Atomic orbital electron populations 1.70017 1.07171 1.29358 1.28478 1.25869 0.95096 1.01071 0.93367 0.85938 0.80290 0.79782 0.78926 1.18263 1.19424 1.19432 1.18272 0.94405 0.87102 1.47090 0.89141 1.21740 0.89410 0.82577 0.97839 1.75767 1.07675 1.04984 1.26431 1.74745 1.21791 0.99636 1.15732 1.21508 0.85491 0.92459 1.18128 1.19857 0.96468 0.90752 0.98787 1.20472 0.90557 0.98862 1.06558 1.19665 0.85700 0.92256 1.16147 1.98306 1.19867 1.88802 1.97654 1.21022 0.87223 0.94047 0.97732 1.43631 1.05041 1.08843 1.54991 0.90433 0.84198 0.85050 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.10 11.93 55.55 0.66 -18.44 14 2 C 0.07 1.77 5.50 -17.29 -0.10 1.67 14 3 Si 0.93 17.62 29.56 -169.99 -5.03 12.59 14 4 H -0.26 -4.75 7.11 56.52 0.40 -4.34 14 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 14 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 7 C -0.43 -10.95 9.27 -38.40 -0.36 -11.30 14 8 H 0.09 2.07 7.85 -52.49 -0.41 1.66 14 9 C 0.32 8.76 7.59 -154.85 -1.17 7.58 14 10 N -0.30 -8.89 10.48 31.23 0.33 -8.56 14 11 N -0.27 -7.53 12.31 31.14 0.38 -7.14 14 12 C 0.07 1.72 7.89 -155.58 -1.23 0.49 14 13 C -0.04 -0.69 10.10 -39.43 -0.40 -1.09 14 14 C -0.14 -2.31 9.87 -39.41 -0.39 -2.70 14 15 C -0.10 -1.82 6.29 -39.78 -0.25 -2.07 14 16 Cl -0.07 -1.07 28.94 -51.86 -1.50 -2.57 14 17 C 0.13 2.50 10.64 -16.65 -0.18 2.32 14 18 N -0.44 -10.55 2.99 -62.00 -0.19 -10.73 14 19 H 0.28 6.65 8.30 -40.82 -0.34 6.31 14 20 H 0.14 2.22 8.06 -52.49 -0.42 1.80 14 21 H 0.13 1.75 8.06 -52.48 -0.42 1.33 14 22 H 0.16 2.72 8.06 -52.49 -0.42 2.30 14 LS Contribution 225.00 15.07 3.39 3.39 Total: -1.00 -29.94 225.00 -6.83 -36.77 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -0.81 Total: -0.21 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -4.07 Total: -5.09 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 1.19 Total: -44.88 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.94 -6.83 -36.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080323.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.367 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds