Wall clock time and date at job start Mon Mar 30 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47186 * 2 1 4 4 C 1.53004 * 109.47318 * 120.00350 * 2 1 3 5 5 N 1.46504 * 109.47059 * 64.99676 * 4 2 1 6 6 C 1.35046 * 126.39446 * 270.00116 * 5 4 2 7 7 N 1.30499 * 108.69457 * 180.02562 * 6 5 4 8 8 C 1.34128 * 109.26095 * 0.02562 * 7 6 5 9 9 C 1.50697 * 125.99126 * 180.26420 * 8 7 6 10 10 H 1.08998 * 109.47389 * 24.68993 * 9 8 7 11 11 C 1.53003 * 109.46989 * 144.69013 * 9 8 7 12 12 C 1.50705 * 109.47360 * 264.68871 * 9 8 7 13 13 H 1.08004 * 119.99580 * 359.97438 * 12 9 8 14 14 C 1.37869 * 120.00086 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00261 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99997 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47314 * 89.99890 * 16 14 12 18 18 H 1.48498 * 109.47131 * 209.99840 * 16 14 12 19 19 H 1.48496 * 109.47283 * 329.99607 * 16 14 12 20 20 C 1.34675 * 108.01655 * 0.02562 * 8 7 6 21 21 H 1.08997 * 109.47269 * 59.99727 * 1 2 3 22 22 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46918 * 299.99955 * 1 2 3 24 24 H 1.09006 * 109.47150 * 239.99917 * 2 1 3 25 25 H 1.09001 * 109.47157 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47719 * 300.00141 * 3 2 1 27 27 H 1.08997 * 109.47155 * 60.00190 * 3 2 1 28 28 H 1.09001 * 109.46601 * 305.00272 * 4 2 1 29 29 H 1.08996 * 109.47508 * 185.00154 * 4 2 1 30 30 H 1.08000 * 125.65569 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.47071 * 59.99786 * 11 9 8 32 32 H 1.08998 * 109.46870 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.46749 * 299.99776 * 11 9 8 34 34 H 0.97000 * 120.00578 * 180.02562 * 15 14 12 35 35 H 1.07999 * 126.58848 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.5116 -2.6713 1.6725 7 7 0.5219 -3.9546 1.4355 8 6 1.6583 -4.2781 0.8007 9 6 2.0553 -5.6582 0.3437 10 1 1.1610 -6.2634 0.1961 11 6 2.8259 -5.5569 -0.9743 12 6 2.9302 -6.3012 1.3889 13 1 3.1746 -5.7640 2.2934 14 6 3.4194 -7.5747 1.1899 15 7 3.1222 -8.2287 0.0882 16 14 4.5031 -8.3721 2.4857 17 1 3.6548 -9.1166 3.4507 18 1 5.4487 -9.3112 1.8306 19 1 5.2675 -7.3223 3.2059 20 6 2.3799 -3.1526 0.6387 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2952 30 1 -0.2780 -2.1298 2.1722 31 1 3.7203 -4.9517 -0.8267 32 1 3.1126 -6.5551 -1.3050 33 1 2.1931 -5.0919 -1.7302 34 1 3.4660 -9.1248 -0.0517 35 1 3.3461 -3.0703 0.1632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:59 Heat of formation + Delta-G solvation = 22.609209 kcal Electronic energy + Delta-G solvation = -15152.745328 eV Core-core repulsion = 12764.498149 eV Total energy + Delta-G solvation = -2388.247179 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.82269 -37.64642 -36.15223 -33.53485 -32.59593 -29.20290 -28.06103 -27.28379 -27.02253 -23.78348 -21.93932 -21.10278 -20.53467 -18.35736 -17.84133 -16.50683 -16.27385 -15.86775 -15.22841 -14.81812 -14.68562 -14.45091 -14.16525 -13.64488 -13.37702 -13.10529 -12.89148 -12.81370 -12.73265 -12.27661 -12.19868 -12.04175 -11.90577 -11.68835 -11.63145 -11.08883 -10.65870 -10.38299 -10.19403 -9.00208 -8.05012 -6.19635 1.34566 1.41981 1.43230 1.53602 2.10992 2.38267 2.57738 3.20086 3.75618 3.84900 3.94134 4.02206 4.28505 4.34333 4.52813 4.70303 4.72029 4.81590 4.88842 4.97907 4.99894 5.06113 5.11992 5.22221 5.29401 5.35187 5.42044 5.52030 5.60380 5.88558 5.99515 6.19888 6.39988 6.61643 6.86861 7.45959 7.48860 8.99194 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.047666 B = 0.006165 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.276069 B = 4540.588303 C = 4586.421103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.106 3.894 5 N -0.454 5.454 6 C 0.178 3.822 7 N -0.550 5.550 8 C 0.013 3.987 9 C 0.112 3.888 10 H -0.012 1.012 11 C -0.114 4.114 12 C -0.514 4.514 13 H 0.040 0.960 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.959 3.041 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.269 1.269 20 C -0.065 4.065 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.233 0.767 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 20.087 0.840 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.195 4.195 4 C -0.015 4.015 5 N -0.137 5.137 6 C -0.104 4.104 7 N -0.270 5.270 8 C -0.115 4.115 9 C 0.093 3.907 10 H 0.007 0.993 11 C -0.172 4.172 12 C -0.553 4.553 13 H 0.058 0.942 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.784 3.216 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.197 4.197 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.249 0.751 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.580 19.537 0.972 19.625 hybrid contribution 0.959 -0.463 0.223 1.089 sum -0.621 19.074 1.195 19.121 Atomic orbital electron populations 1.21883 0.94548 1.01232 1.03038 1.21455 0.96914 0.97557 0.96826 1.21727 1.01427 0.93235 1.03154 1.22271 1.02405 0.76132 1.00723 1.45531 1.15987 1.08681 1.43526 1.25392 0.91967 0.89701 1.03361 1.70091 1.23777 1.13878 1.19219 1.21193 0.91994 0.96612 1.01696 1.16987 0.93657 0.86353 0.93733 0.99342 1.21548 0.98166 1.01299 0.96172 1.21250 1.30239 1.00227 1.03568 0.94163 1.25734 0.97810 0.97426 0.97618 1.70020 1.46438 1.12653 1.26752 0.85546 0.78624 0.78284 0.79109 1.20536 1.20140 1.19394 1.22336 1.00683 0.87636 1.09004 0.91996 0.94540 0.90609 0.92586 0.91927 0.91761 0.90900 0.86637 0.88450 0.75103 0.94214 0.92140 0.95984 0.92849 0.80723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.89 71.98 0.64 -1.90 16 2 C -0.11 -1.82 3.13 -10.79 -0.03 -1.85 16 3 C -0.14 -1.54 9.19 71.98 0.66 -0.87 16 4 C 0.11 1.98 5.58 86.38 0.48 2.46 16 5 N -0.45 -13.84 2.57 -529.05 -1.36 -15.20 16 6 C 0.18 6.02 10.86 180.26 1.96 7.98 16 7 N -0.55 -25.76 11.25 -188.31 -2.12 -27.88 16 8 C 0.01 0.63 5.96 41.39 0.25 0.88 16 9 C 0.11 6.39 2.75 -12.28 -0.03 6.35 16 10 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 11 C -0.11 -5.85 8.55 71.98 0.62 -5.24 16 12 C -0.51 -30.84 8.55 25.60 0.22 -30.63 16 13 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 14 C 0.01 0.71 5.30 84.65 0.45 1.16 16 15 N -0.92 -55.53 11.32 21.44 0.24 -55.29 16 16 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 C -0.06 -2.58 10.73 83.09 0.89 -1.69 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.04 0.82 6.50 -2.39 -0.02 0.80 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.23 5.46 8.06 -2.91 -0.02 5.44 16 31 H 0.04 1.87 7.28 -2.39 -0.02 1.85 16 32 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.18 6.37 7.38 -2.91 -0.02 6.34 16 Total: -1.00 -73.21 288.23 5.92 -67.29 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.04 Total: 6.62 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 6.09 Total: -23.34 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -3.24 Total: -98.37 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.21 5.92 -67.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.897 kcal (2) G-P(sol) polarization free energy of solvation -73.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds