Wall clock time and date at job start Mon Mar 30 2020 02:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47654 * 2 1 4 4 C 1.52999 * 109.46888 * 120.00237 * 2 1 3 5 5 N 1.46497 * 109.47139 * 174.99705 * 4 2 1 6 6 C 1.35047 * 126.39700 * 89.97560 * 5 4 2 7 7 N 1.30501 * 108.70180 * 180.02562 * 6 5 4 8 8 C 1.34131 * 109.25374 * 359.97438 * 7 6 5 9 9 C 1.50707 * 125.99030 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46877 * 335.02175 * 9 8 7 11 11 C 1.53000 * 109.47003 * 215.02478 * 9 8 7 12 12 C 1.50696 * 109.47007 * 95.01898 * 9 8 7 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99717 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.34668 * 108.02318 * 0.26239 * 8 7 6 21 21 H 1.09004 * 109.46844 * 300.00069 * 1 2 3 22 22 H 1.09000 * 109.46612 * 59.99970 * 1 2 3 23 23 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46844 * 239.99931 * 2 1 3 25 25 H 1.08999 * 109.46646 * 300.00521 * 3 2 1 26 26 H 1.08999 * 109.46686 * 59.99751 * 3 2 1 27 27 H 1.08994 * 109.47481 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47417 * 54.99875 * 4 2 1 29 29 H 1.09000 * 109.47102 * 294.99649 * 4 2 1 30 30 H 1.07997 * 125.64910 * 0.02562 * 6 5 4 31 31 H 1.08998 * 109.46637 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.46749 * 299.99588 * 11 9 8 33 33 H 1.08996 * 109.47024 * 59.99731 * 11 9 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.08002 * 126.59366 * 179.69631 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.3880 0.0697 1.6722 7 7 5.5944 -0.3674 1.4345 8 6 5.5205 -1.5465 0.7995 9 6 6.6893 -2.3836 0.3471 10 1 7.5586 -1.7431 0.1979 11 6 6.3380 -3.0813 -0.9684 12 6 7.0021 -3.4185 1.3968 13 1 6.4133 -3.4658 2.3010 14 6 8.0402 -4.3051 1.2030 15 7 8.3129 -5.2087 2.1188 16 14 9.0590 -4.2228 -0.3605 17 1 8.4491 -5.0957 -1.3955 18 1 9.0969 -2.8225 -0.8536 19 1 10.4413 -4.6847 -0.0754 20 6 4.2189 -1.8490 0.6325 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9562 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6053 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1369 30 1 4.1407 0.9949 2.1714 31 1 7.1835 -3.6862 -1.2958 32 1 5.4687 -3.7216 -0.8192 33 1 6.1117 -2.3326 -1.7276 34 1 9.0429 -5.8327 1.9823 35 1 3.8191 -2.7297 0.1519 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:02 Heat of formation + Delta-G solvation = 49.208570 kcal Electronic energy + Delta-G solvation = -15198.865416 eV Core-core repulsion = 12811.771672 eV Total energy + Delta-G solvation = -2387.093744 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45151 -36.72167 -34.39223 -32.11918 -31.18985 -28.02549 -27.34868 -26.19474 -24.94090 -22.12501 -20.80324 -20.16548 -18.84381 -16.70448 -16.46594 -15.26019 -15.02786 -14.58412 -13.93398 -13.43569 -13.32835 -13.17357 -12.72801 -12.59847 -12.46880 -12.16673 -12.08291 -11.47490 -11.20544 -11.07407 -10.96244 -10.79404 -10.33983 -10.01030 -9.42826 -9.20811 -9.01957 -8.75259 -8.44630 -7.46919 -5.95416 -3.92835 2.71780 3.27163 3.35459 3.47207 3.50737 4.02393 4.51526 4.51733 4.59918 4.79907 5.08047 5.18789 5.25099 5.35994 5.38711 5.45569 5.55101 5.59541 5.66343 5.83034 6.04403 6.06608 6.10377 6.42421 6.47118 6.62127 6.76751 6.89009 7.12943 7.46100 7.68056 7.86597 7.88278 8.67008 8.91228 9.09866 9.66272 11.18174 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.050378 B = 0.006416 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.660729 B = 4363.029833 C = 4419.223129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.151 4.151 4 C 0.113 3.887 5 N -0.465 5.465 6 C 0.162 3.838 7 N -0.491 5.491 8 C 0.063 3.937 9 C 0.080 3.920 10 H 0.040 0.960 11 C -0.142 4.142 12 C -0.496 4.496 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.905 5.905 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.265 1.265 19 H -0.298 1.298 20 C -0.071 4.071 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.191 0.809 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.545 10.307 -5.104 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.208 4.208 4 C -0.011 4.011 5 N -0.150 5.150 6 C -0.119 4.119 7 N -0.210 5.210 8 C -0.065 4.065 9 C 0.060 3.940 10 H 0.058 0.942 11 C -0.199 4.199 12 C -0.535 4.535 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.544 5.544 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.190 1.190 19 H -0.226 1.226 20 C -0.201 4.201 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.845 10.566 -4.820 18.848 hybrid contribution -0.283 -0.536 -0.890 1.077 sum -15.127 10.030 -5.710 19.027 Atomic orbital electron populations 1.21779 0.94228 1.02054 1.02159 1.21506 0.96045 0.97249 0.98422 1.21891 1.02095 0.95141 1.01704 1.21833 0.78159 1.02218 0.98843 1.45342 1.06359 1.18264 1.45076 1.24720 0.84501 0.97489 1.05164 1.70198 1.21544 1.12214 1.17063 1.20986 0.93823 0.92474 0.99213 1.17626 0.90387 0.92968 0.93017 0.94225 1.22135 1.00626 0.99334 0.97853 1.20899 1.15591 1.13027 1.03934 0.91063 1.24981 0.96769 0.95078 0.96472 1.69901 1.30609 1.19421 1.34421 0.86835 0.78774 0.78840 0.83668 1.20715 1.18994 1.22601 1.22340 0.92547 0.95753 1.09449 0.92428 0.92204 0.92394 0.90442 0.92574 0.92622 0.91838 0.89537 0.89525 0.79182 0.94028 0.92988 0.95136 0.92789 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.11 -1.05 3.13 -90.62 -0.28 -1.33 16 3 C -0.15 -1.40 8.89 37.16 0.33 -1.07 16 4 C 0.11 1.21 5.58 -4.04 -0.02 1.18 16 5 N -0.46 -7.29 2.57 -118.58 -0.31 -7.59 16 6 C 0.16 2.78 10.86 -90.37 -0.98 1.80 16 7 N -0.49 -10.98 11.25 -10.87 -0.12 -11.11 16 8 C 0.06 1.47 5.96 -82.85 -0.49 0.97 16 9 C 0.08 2.04 2.35 -92.92 -0.22 1.83 16 10 H 0.04 1.07 7.20 -51.93 -0.37 0.70 16 11 C -0.14 -3.18 8.25 37.16 0.31 -2.87 16 12 C -0.50 -14.70 9.13 -34.44 -0.31 -15.02 16 13 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 14 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 15 N -0.90 -28.57 13.96 55.43 0.77 -27.79 16 16 Si 0.89 22.71 24.37 -169.99 -4.14 18.57 16 17 H -0.28 -6.86 6.87 56.52 0.39 -6.47 16 18 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 19 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 20 C -0.07 -1.37 10.72 -16.56 -0.18 -1.55 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.19 2.46 8.06 -52.49 -0.42 2.03 16 31 H 0.04 0.96 3.28 -51.93 -0.17 0.79 16 32 H 0.05 1.09 7.27 -51.93 -0.38 0.71 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.17 2.90 7.37 -52.49 -0.39 2.51 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -33.96 281.40 -6.64 -40.60 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.47 Total: -2.11 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.61 Total: -14.80 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.35 Total: -46.49 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.14 Total: 18.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.96 -6.64 -40.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.806 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds