Wall clock time and date at job start Mon Mar 30 2020 03:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48494 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46951 * 299.99709 * 3 2 1 6 6 H 1.48501 * 109.47299 * 59.99636 * 3 2 1 7 7 C 1.37870 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00274 * 186.08203 * 7 2 1 9 9 C 1.50699 * 120.00124 * 6.08238 * 7 2 1 10 10 C 1.52999 * 109.47273 * 57.25906 * 9 7 2 11 11 C 1.54890 * 110.75922 * 176.06629 * 10 9 7 12 12 C 1.54469 * 104.09990 * 203.89776 * 11 10 9 13 13 C 1.53873 * 106.68797 * 23.34028 * 12 11 10 14 14 C 1.54269 * 106.59676 * 0.16013 * 13 12 11 15 15 C 1.53007 * 109.47196 * 297.26215 * 9 7 2 16 16 C 1.52999 * 109.46571 * 299.99662 * 15 9 7 17 17 C 1.53000 * 109.47670 * 299.99878 * 16 15 9 18 18 C 1.52998 * 109.47139 * 60.00215 * 17 16 15 19 19 C 1.52996 * 109.47373 * 177.25940 * 9 7 2 20 20 H 0.97000 * 120.00565 * 0.02562 * 1 2 3 21 21 H 1.08999 * 110.66964 * 299.30414 * 10 9 7 22 22 H 1.09006 * 110.48440 * 322.42271 * 11 10 9 23 23 H 1.08991 * 110.48634 * 85.06164 * 11 10 9 24 24 H 1.09010 * 109.85154 * 264.09876 * 12 11 10 25 25 H 1.08997 * 110.12222 * 142.72659 * 12 11 10 26 26 H 1.09000 * 110.03211 * 240.87597 * 13 12 11 27 27 H 1.08994 * 110.03312 * 119.44317 * 13 12 11 28 28 H 1.08998 * 110.48684 * 217.71362 * 14 13 12 29 29 H 1.08996 * 110.59623 * 95.12369 * 14 13 12 30 30 H 1.08995 * 109.47094 * 179.97438 * 15 9 7 31 31 H 1.08992 * 109.47116 * 59.99973 * 15 9 7 32 32 H 1.08995 * 109.47212 * 60.00316 * 16 15 9 33 33 H 1.09009 * 109.47060 * 180.02562 * 16 15 9 34 34 H 1.08998 * 109.47304 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.47019 * 300.00172 * 17 16 15 36 36 H 1.08988 * 109.47455 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47200 * 60.00068 * 18 17 16 38 38 H 1.09003 * 109.47206 * 179.97438 * 19 9 7 39 39 H 1.08998 * 109.47317 * 300.00060 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1966 0.0996 9 6 1.2575 -2.4955 -0.1372 10 6 0.4422 -2.4811 -1.4318 11 6 -0.2607 -3.8435 -1.6530 12 6 -0.4925 -3.9039 -3.1791 13 6 0.5433 -2.9642 -3.8208 14 6 1.3725 -2.3672 -2.6650 15 6 0.3163 -2.6721 1.0562 16 6 1.1316 -2.6865 2.3508 17 6 2.1294 -3.8457 2.3123 18 6 3.0705 -3.6692 1.1190 19 6 2.2552 -3.6547 -0.1757 20 1 -0.4851 0.8400 -0.0004 21 1 -0.2845 -1.6689 -1.4198 22 1 0.3846 -4.6620 -1.3340 23 1 -1.2099 -3.8742 -1.1183 24 1 -1.5012 -3.5640 -3.4140 25 1 -0.3474 -4.9219 -3.5403 26 1 0.0373 -2.1683 -4.3673 27 1 1.1910 -3.5262 -4.4935 28 1 1.6121 -1.3233 -2.8669 29 1 2.2843 -2.9438 -2.5096 30 1 -0.2244 -3.6132 0.9564 31 1 -0.3945 -1.8463 1.0836 32 1 1.6719 -1.7452 2.4504 33 1 0.4612 -2.8128 3.2010 34 1 2.7099 -3.8562 3.2348 35 1 1.5890 -4.7871 2.2128 36 1 3.7811 -4.4952 1.0913 37 1 3.6109 -2.7278 1.2186 38 1 1.7148 -4.5961 -0.2748 39 1 2.9257 -3.5289 -1.0258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261127071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:59 Heat of formation + Delta-G solvation = -47.487935 kcal Electronic energy + Delta-G solvation = -16818.596567 eV Core-core repulsion = 14530.850092 eV Total energy + Delta-G solvation = -2287.746476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44703 -37.43666 -34.51149 -31.94942 -31.12821 -29.31738 -27.74922 -26.64622 -23.31708 -22.62906 -21.13553 -20.42083 -19.64335 -17.31769 -16.65819 -16.48719 -15.99128 -15.07134 -14.90160 -14.67803 -14.42249 -13.94075 -13.52703 -13.21594 -12.91610 -12.78294 -12.42903 -12.37162 -12.25038 -11.96612 -11.70702 -11.64878 -11.59632 -11.47172 -11.20598 -11.04149 -10.95318 -10.51226 -10.32403 -10.04195 -9.95448 -7.84848 -5.93788 1.38733 1.45047 1.51303 2.52430 3.37443 4.08436 4.10473 4.13575 4.26814 4.36829 4.38430 4.73082 4.83881 4.94037 4.94621 4.97362 5.05293 5.07396 5.11179 5.12999 5.15691 5.23915 5.25571 5.33648 5.34962 5.42594 5.49259 5.59994 5.64212 5.69390 5.77360 5.83059 5.88668 5.97970 6.14258 6.33391 6.51535 6.68302 7.13241 7.69086 9.12754 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.015339 C = 0.010611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.207357 B = 1824.955754 C = 2638.069733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.028 3.972 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.484 4.484 8 H 0.042 0.958 9 C 0.079 3.921 10 C -0.072 4.072 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.105 4.105 15 C -0.098 4.098 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.103 4.103 20 H 0.250 0.750 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -7.862 -1.953 8.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.078 3.922 10 C -0.091 4.091 11 C -0.161 4.161 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.142 4.142 15 C -0.136 4.136 16 C -0.140 4.140 17 C -0.142 4.142 18 C -0.147 4.147 19 C -0.140 4.140 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.334 -7.729 -1.960 8.084 hybrid contribution 0.264 1.604 0.084 1.628 sum 1.598 -6.124 -1.877 6.602 Atomic orbital electron populations 1.69957 1.06290 1.25487 1.52578 1.25311 0.95170 1.00386 0.96140 0.86122 0.79590 0.82719 0.76848 1.19820 1.21627 1.21747 1.21291 0.92475 0.91547 1.46943 0.94008 1.18029 0.91487 0.91807 0.90831 1.21983 0.96961 0.95363 0.94811 1.22566 0.99333 0.98677 0.95527 1.22116 0.98452 0.99479 0.95335 1.22138 0.97710 0.98425 0.97604 1.22224 0.98376 0.98405 0.95230 1.21440 0.98531 0.98111 0.95551 1.21327 0.97480 0.98177 0.97052 1.21417 0.97192 0.97822 0.97755 1.21433 0.97576 1.00318 0.95334 1.21654 0.97864 0.98111 0.96376 0.93992 0.92143 0.91533 0.93787 0.92692 0.90819 0.93169 0.91117 0.95287 0.92190 0.95854 0.92660 0.94101 0.94218 0.92225 0.92306 0.92159 0.93572 0.93073 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.58 9.43 21.44 0.20 -49.38 16 2 C 0.03 1.47 5.13 84.65 0.43 1.91 16 3 Si 0.92 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.48 -24.66 5.54 25.60 0.14 -24.52 16 8 H 0.04 2.19 6.62 -2.91 -0.02 2.17 16 9 C 0.08 3.54 0.08 -52.93 0.00 3.53 16 10 C -0.07 -3.17 1.94 -9.50 -0.02 -3.19 16 11 C -0.12 -4.53 5.27 31.74 0.17 -4.36 16 12 C -0.12 -3.64 6.81 31.39 0.21 -3.42 16 13 C -0.12 -3.99 6.80 31.32 0.21 -3.78 16 14 C -0.10 -4.24 5.61 31.67 0.18 -4.06 16 15 C -0.10 -4.47 4.37 30.60 0.13 -4.34 16 16 C -0.10 -4.25 5.70 30.59 0.17 -4.08 16 17 C -0.10 -3.62 5.92 30.59 0.18 -3.44 16 18 C -0.11 -3.95 5.70 30.60 0.17 -3.78 16 19 C -0.10 -4.01 4.06 30.60 0.12 -3.88 16 20 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 21 H 0.06 3.15 6.22 -2.39 -0.01 3.13 16 22 H 0.07 2.30 5.69 -2.38 -0.01 2.29 16 23 H 0.04 1.64 8.00 -2.39 -0.02 1.62 16 24 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 2.34 5.76 -2.39 -0.01 2.33 16 30 H 0.02 0.98 7.31 -2.39 -0.02 0.96 16 31 H 0.05 2.90 6.06 -2.39 -0.01 2.88 16 32 H 0.04 1.89 7.22 -2.39 -0.02 1.88 16 33 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.85 6.57 -2.39 -0.02 1.84 16 38 H 0.05 1.84 6.05 -2.39 -0.01 1.83 16 39 H 0.04 1.77 6.09 -2.39 -0.01 1.76 16 Total: -1.00 -53.99 276.37 5.34 -48.65 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.00 Total: 12.70 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 2.11 Total: -57.40 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.20 Total: -49.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -53.99 5.34 -48.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.161 kcal (2) G-P(sol) polarization free energy of solvation -53.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds