Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99760 * 2 1 4 4 H 1.48501 * 109.47122 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47024 * 120.00064 * 3 2 1 6 6 H 1.48495 * 109.47294 * 240.00189 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99999 * 186.06641 * 7 2 1 9 9 C 1.50696 * 119.99785 * 6.06655 * 7 2 1 10 10 H 1.08998 * 109.47566 * 5.30920 * 9 7 2 11 11 C 1.53010 * 109.46910 * 245.31620 * 9 7 2 12 12 C 1.53780 * 113.61591 * 151.59524 * 11 9 7 13 13 C 1.53948 * 87.01886 * 220.04567 * 12 11 9 14 14 C 1.53774 * 113.61378 * 53.98804 * 11 9 7 15 15 C 1.52998 * 109.47533 * 125.31579 * 9 7 2 16 16 C 1.52997 * 109.46901 * 300.00119 * 15 9 7 17 17 C 1.52998 * 109.46901 * 180.02562 * 16 15 9 18 18 C 1.52996 * 109.47613 * 59.99766 * 17 16 15 19 19 C 1.53004 * 109.47074 * 299.99815 * 18 17 16 20 20 C 1.52995 * 109.47303 * 179.97438 * 15 9 7 21 21 H 0.96999 * 119.99735 * 175.10671 * 1 2 3 22 22 H 1.09003 * 112.84607 * 282.79480 * 11 9 7 23 23 H 1.09000 * 113.61374 * 334.56834 * 12 11 9 24 24 H 1.09001 * 113.61500 * 105.47019 * 12 11 9 25 25 H 1.09003 * 113.53942 * 270.81048 * 13 12 11 26 26 H 1.08999 * 113.74228 * 139.94462 * 13 12 11 27 27 H 1.09006 * 113.61352 * 254.53370 * 14 11 9 28 28 H 1.09000 * 113.62049 * 25.34788 * 14 11 9 29 29 H 1.09004 * 109.46670 * 59.99538 * 15 9 7 30 30 H 1.09004 * 109.46984 * 299.99226 * 16 15 9 31 31 H 1.08997 * 109.47503 * 59.99515 * 16 15 9 32 32 H 1.08998 * 109.47233 * 299.99017 * 17 16 15 33 33 H 1.09007 * 109.46876 * 179.97438 * 17 16 15 34 34 H 1.08998 * 109.47317 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.47278 * 59.99574 * 18 17 16 36 36 H 1.08995 * 109.46999 * 300.00407 * 19 18 17 37 37 H 1.08997 * 109.46991 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.47556 * 300.00337 * 20 15 9 39 39 H 1.09004 * 109.47171 * 60.00413 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0983 9 6 1.2575 -2.4954 -0.1390 10 1 0.2024 -2.2911 -0.3208 11 6 1.4050 -3.3077 1.1492 12 6 0.2188 -4.2469 1.4245 13 6 0.3487 -3.8460 2.9051 14 6 0.9903 -2.5375 2.4139 15 6 1.8324 -3.2912 -1.3124 16 6 1.6850 -2.4789 -2.6005 17 6 2.2594 -3.2751 -3.7740 18 6 1.5003 -4.5960 -3.9144 19 6 1.6479 -5.4084 -2.6263 20 6 1.0743 -4.6127 -1.4526 21 1 -0.4850 -0.8370 -0.0717 22 1 2.3764 -3.7948 1.2335 23 1 -0.7132 -3.9197 0.9636 24 1 0.4402 -5.2971 1.2345 25 1 1.0307 -4.4815 3.4700 26 1 -0.6084 -3.7017 3.4063 27 1 1.8337 -2.2097 3.0217 28 1 0.2707 -1.7412 2.2240 29 1 2.8876 -3.4955 -1.1305 30 1 0.6298 -2.2746 -2.7825 31 1 2.2253 -1.5376 -2.5004 32 1 3.3144 -3.4797 -3.5925 33 1 2.1539 -2.6965 -4.6919 34 1 1.9093 -5.1630 -4.7507 35 1 0.4452 -4.3913 -4.0960 36 1 2.7029 -5.6130 -2.4446 37 1 1.1067 -6.3493 -2.7261 38 1 1.1797 -5.1913 -0.5349 39 1 0.0191 -4.4087 -1.6344 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -24.199632 kcal Electronic energy + Delta-G solvation = -16337.269844 eV Core-core repulsion = 14050.533225 eV Total energy + Delta-G solvation = -2286.736619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.87535 -37.05659 -33.41315 -30.96669 -30.07625 -26.98375 -24.85950 -23.91897 -22.38074 -21.62337 -20.03574 -19.09099 -18.25300 -16.50990 -15.21095 -14.28087 -14.12632 -13.72767 -13.67850 -13.46373 -12.88697 -12.64949 -11.86394 -11.73762 -11.57891 -11.50534 -11.20009 -10.71891 -10.66025 -10.64819 -10.48723 -10.20365 -10.10062 -9.81960 -9.63226 -9.53958 -9.31920 -8.98574 -8.76786 -8.30920 -8.07395 -6.23490 -3.89491 3.47522 3.48062 3.66682 4.58722 5.24408 5.33386 5.36612 5.44925 5.49149 5.61749 5.64862 5.87034 5.95183 6.00501 6.10803 6.12198 6.16775 6.24723 6.28889 6.31110 6.46376 6.47835 6.53178 6.64443 6.68740 6.72886 6.82289 6.90866 6.96035 7.08123 7.16066 7.29125 7.36583 7.40184 7.66315 7.75960 8.39915 8.54962 9.02637 9.78803 11.14997 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.012840 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.255296 B = 2180.216572 C = 3322.146220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 1.057 2.943 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.575 4.575 8 H 0.043 0.957 9 C 0.038 3.962 10 H 0.044 0.956 11 C -0.088 4.088 12 C -0.140 4.140 13 C -0.153 4.153 14 C -0.112 4.112 15 C -0.069 4.069 16 C -0.098 4.098 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.118 4.118 21 H 0.269 0.731 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -8.036 -2.370 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.887 3.113 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.613 4.613 8 H 0.061 0.939 9 C 0.019 3.981 10 H 0.062 0.938 11 C -0.106 4.106 12 C -0.178 4.178 13 C -0.191 4.191 14 C -0.149 4.149 15 C -0.088 4.088 16 C -0.135 4.135 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.156 4.156 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.776 -6.376 -2.306 7.009 hybrid contribution 0.299 -1.704 -0.046 1.730 sum 2.075 -8.080 -2.352 8.667 Atomic orbital electron populations 1.70841 1.06767 1.30841 1.47131 1.25604 0.96500 1.02005 0.93789 0.83711 0.75064 0.76147 0.76422 1.21038 1.21700 1.21611 1.21745 0.94342 0.91557 1.53683 0.93885 1.19048 0.97558 0.93154 0.88351 0.93756 1.22605 0.95131 0.95178 0.97726 1.23120 1.00286 0.98474 0.95881 1.22949 0.99952 0.99622 0.96562 1.22649 0.99813 0.95455 0.96989 1.21199 0.98247 0.92914 0.96458 1.21389 1.00235 0.98863 0.93046 1.21604 0.99339 0.95923 0.98925 1.21509 1.00293 0.96616 0.96911 1.21538 1.00494 0.97679 0.95800 1.21773 0.99547 0.97456 0.96801 0.91806 0.92004 0.91021 0.93173 0.91669 0.92934 0.93284 0.89785 0.93445 0.93413 0.90943 0.92818 0.93220 0.93343 0.92552 0.92750 0.93356 0.92232 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 13.65 55.43 0.76 -25.79 16 2 C 0.02 0.67 5.45 -17.82 -0.10 0.58 16 3 Si 1.06 24.89 29.91 -169.99 -5.08 19.80 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.57 -15.10 6.33 -34.44 -0.22 -15.32 16 8 H 0.04 1.17 7.82 -52.49 -0.41 0.76 16 9 C 0.04 0.88 1.56 -91.77 -0.14 0.74 16 10 H 0.04 1.14 5.40 -51.93 -0.28 0.86 16 11 C -0.09 -1.84 2.66 -89.81 -0.24 -2.08 16 12 C -0.14 -2.58 6.08 -25.83 -0.16 -2.73 16 13 C -0.15 -2.72 8.09 -25.83 -0.21 -2.93 16 14 C -0.11 -2.37 6.91 -25.92 -0.18 -2.55 16 15 C -0.07 -1.42 1.75 -90.62 -0.16 -1.58 16 16 C -0.10 -1.99 4.96 -26.73 -0.13 -2.12 16 17 C -0.12 -2.00 5.92 -26.73 -0.16 -2.16 16 18 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 19 C -0.12 -1.79 5.92 -26.75 -0.16 -1.95 16 20 C -0.12 -2.09 4.44 -26.76 -0.12 -2.21 16 21 H 0.27 7.76 6.28 -40.82 -0.26 7.50 16 22 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 23 H 0.07 1.37 7.88 -51.93 -0.41 0.96 16 24 H 0.05 0.83 7.10 -51.93 -0.37 0.46 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 2.02 8.10 -51.93 -0.42 1.60 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.64 7.22 -51.93 -0.37 1.27 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.03 5.41 -51.93 -0.28 0.75 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -26.96 291.92 -9.15 -36.11 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.09 Total: 1.68 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: -2.13 Total: -36.20 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.76 Total: -25.79 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.96 -9.15 -36.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.912 kcal (2) G-P(sol) polarization free energy of solvation -26.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds