Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99760 * 2 1 4 4 H 1.48501 * 109.47122 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47024 * 120.00064 * 3 2 1 6 6 H 1.48495 * 109.47294 * 240.00189 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99999 * 186.06641 * 7 2 1 9 9 C 1.50696 * 119.99785 * 6.06655 * 7 2 1 10 10 H 1.08998 * 109.47566 * 5.30920 * 9 7 2 11 11 C 1.53010 * 109.46910 * 245.31620 * 9 7 2 12 12 C 1.53780 * 113.61591 * 151.59524 * 11 9 7 13 13 C 1.53948 * 87.01886 * 220.04567 * 12 11 9 14 14 C 1.53774 * 113.61378 * 53.98804 * 11 9 7 15 15 C 1.52998 * 109.47533 * 125.31579 * 9 7 2 16 16 C 1.52997 * 109.46901 * 300.00119 * 15 9 7 17 17 C 1.52998 * 109.46901 * 180.02562 * 16 15 9 18 18 C 1.52996 * 109.47613 * 59.99766 * 17 16 15 19 19 C 1.53004 * 109.47074 * 299.99815 * 18 17 16 20 20 C 1.52995 * 109.47303 * 179.97438 * 15 9 7 21 21 H 0.96999 * 119.99735 * 175.10671 * 1 2 3 22 22 H 1.09003 * 112.84607 * 282.79480 * 11 9 7 23 23 H 1.09000 * 113.61374 * 334.56834 * 12 11 9 24 24 H 1.09001 * 113.61500 * 105.47019 * 12 11 9 25 25 H 1.09003 * 113.53942 * 270.81048 * 13 12 11 26 26 H 1.08999 * 113.74228 * 139.94462 * 13 12 11 27 27 H 1.09006 * 113.61352 * 254.53370 * 14 11 9 28 28 H 1.09000 * 113.62049 * 25.34788 * 14 11 9 29 29 H 1.09004 * 109.46670 * 59.99538 * 15 9 7 30 30 H 1.09004 * 109.46984 * 299.99226 * 16 15 9 31 31 H 1.08997 * 109.47503 * 59.99515 * 16 15 9 32 32 H 1.08998 * 109.47233 * 299.99017 * 17 16 15 33 33 H 1.09007 * 109.46876 * 179.97438 * 17 16 15 34 34 H 1.08998 * 109.47317 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.47278 * 59.99574 * 18 17 16 36 36 H 1.08995 * 109.46999 * 300.00407 * 19 18 17 37 37 H 1.08997 * 109.46991 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.47556 * 300.00337 * 20 15 9 39 39 H 1.09004 * 109.47171 * 60.00413 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0983 9 6 1.2575 -2.4954 -0.1390 10 1 0.2024 -2.2911 -0.3208 11 6 1.4050 -3.3077 1.1492 12 6 0.2188 -4.2469 1.4245 13 6 0.3487 -3.8460 2.9051 14 6 0.9903 -2.5375 2.4139 15 6 1.8324 -3.2912 -1.3124 16 6 1.6850 -2.4789 -2.6005 17 6 2.2594 -3.2751 -3.7740 18 6 1.5003 -4.5960 -3.9144 19 6 1.6479 -5.4084 -2.6263 20 6 1.0743 -4.6127 -1.4526 21 1 -0.4850 -0.8370 -0.0717 22 1 2.3764 -3.7948 1.2335 23 1 -0.7132 -3.9197 0.9636 24 1 0.4402 -5.2971 1.2345 25 1 1.0307 -4.4815 3.4700 26 1 -0.6084 -3.7017 3.4063 27 1 1.8337 -2.2097 3.0217 28 1 0.2707 -1.7412 2.2240 29 1 2.8876 -3.4955 -1.1305 30 1 0.6298 -2.2746 -2.7825 31 1 2.2253 -1.5376 -2.5004 32 1 3.3144 -3.4797 -3.5925 33 1 2.1539 -2.6965 -4.6919 34 1 1.9093 -5.1630 -4.7507 35 1 0.4452 -4.3913 -4.0960 36 1 2.7029 -5.6130 -2.4446 37 1 1.1067 -6.3493 -2.7261 38 1 1.1797 -5.1913 -0.5349 39 1 0.0191 -4.4087 -1.6344 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -35.986072 kcal Electronic energy + Delta-G solvation = -16337.780942 eV Core-core repulsion = 14050.533225 eV Total energy + Delta-G solvation = -2287.247717 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49766 -38.53855 -35.31559 -32.67659 -31.51174 -28.66827 -26.51893 -25.79530 -23.98273 -23.06667 -21.59717 -20.70448 -19.84055 -18.52562 -16.74346 -15.89719 -15.65413 -15.59978 -15.17969 -14.87186 -14.53679 -14.36996 -13.51331 -13.29066 -13.22111 -12.94431 -12.80370 -12.55389 -12.32830 -12.18988 -11.97672 -11.91651 -11.61620 -11.32202 -11.22988 -11.18144 -10.96600 -10.74728 -10.60025 -10.14104 -10.02515 -8.42426 -6.06865 1.51971 1.58099 1.76227 2.61476 3.34129 3.86635 3.95739 4.00118 4.02191 4.08787 4.14311 4.33661 4.46962 4.48933 4.73835 4.74896 4.78385 4.78634 4.85261 4.91229 4.92550 5.03510 5.07015 5.21664 5.22565 5.27549 5.28387 5.34398 5.39891 5.45104 5.50742 5.62216 5.67281 5.73826 5.85900 6.00393 6.33911 6.38442 6.88544 7.67006 8.96537 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.012840 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.255296 B = 2180.216572 C = 3322.146220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.022 4.022 3 Si 1.093 2.907 4 H -0.290 1.290 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.571 4.571 8 H 0.030 0.970 9 C 0.036 3.964 10 H 0.014 0.986 11 C -0.093 4.093 12 C -0.128 4.128 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.066 4.066 16 C -0.095 4.095 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.111 4.111 21 H 0.257 0.743 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -10.272 -2.696 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.220 4.220 3 Si 0.918 3.082 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.610 4.610 8 H 0.049 0.951 9 C 0.017 3.983 10 H 0.032 0.968 11 C -0.111 4.111 12 C -0.165 4.165 13 C -0.171 4.171 14 C -0.161 4.161 15 C -0.085 4.085 16 C -0.132 4.132 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.149 4.149 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.682 -8.629 -2.632 9.412 hybrid contribution 0.051 -0.990 0.062 0.993 sum 2.732 -9.619 -2.571 10.325 Atomic orbital electron populations 1.70937 1.07635 1.30199 1.49797 1.26677 0.96550 1.05087 0.93649 0.83228 0.74410 0.73089 0.77446 1.21556 1.20289 1.20124 1.21989 0.93732 0.93181 1.52098 0.95143 1.19019 0.95352 0.92969 0.90990 0.96825 1.22554 0.96637 0.95847 0.96109 1.22976 0.98151 0.99217 0.96176 1.22882 1.00685 0.97060 0.96442 1.22596 0.99254 0.96325 0.97898 1.21082 0.97972 0.94293 0.95118 1.21299 0.98581 0.98192 0.95158 1.21553 0.99684 0.96661 0.97360 1.21509 0.99958 0.95638 0.97977 1.21526 1.01082 0.98161 0.94359 1.21669 0.98504 0.95995 0.98705 0.93054 0.91415 0.92381 0.90399 0.88949 0.91790 0.93704 0.93543 0.94026 0.95554 0.94347 0.92125 0.92163 0.90391 0.92916 0.92010 0.90842 0.91455 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 13.65 21.45 0.29 -56.88 16 2 C -0.02 -1.23 5.45 84.65 0.46 -0.77 16 3 Si 1.09 51.26 29.91 68.60 2.05 53.31 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.57 -31.03 6.33 25.60 0.16 -30.87 16 8 H 0.03 1.69 7.82 -2.91 -0.02 1.67 16 9 C 0.04 1.70 1.56 -11.54 -0.02 1.69 16 10 H 0.01 0.73 5.40 -2.39 -0.01 0.72 16 11 C -0.09 -3.87 2.66 -10.27 -0.03 -3.90 16 12 C -0.13 -4.48 6.08 31.18 0.19 -4.29 16 13 C -0.13 -4.44 8.09 31.18 0.25 -4.19 16 14 C -0.12 -5.26 6.91 31.12 0.22 -5.05 16 15 C -0.07 -2.70 1.75 -10.80 -0.02 -2.72 16 16 C -0.09 -3.92 4.96 30.59 0.15 -3.77 16 17 C -0.12 -3.65 5.92 30.59 0.18 -3.47 16 18 C -0.11 -3.05 5.92 30.59 0.18 -2.87 16 19 C -0.11 -3.07 5.92 30.58 0.18 -2.89 16 20 C -0.11 -3.74 4.44 30.58 0.14 -3.60 16 21 H 0.26 15.74 6.28 -92.71 -0.58 15.16 16 22 H 0.07 2.75 8.12 -2.39 -0.02 2.73 16 23 H 0.06 2.20 7.88 -2.39 -0.02 2.18 16 24 H 0.08 2.32 7.10 -2.39 -0.02 2.30 16 25 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.05 2.32 8.10 -2.39 -0.02 2.31 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.80 7.22 -2.39 -0.02 1.78 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.14 5.41 -2.39 -0.01 2.13 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -60.28 291.92 5.56 -54.73 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.17 Total: 15.52 kcal Atomic # 6 Polarization: -68.73 SS G_CDS: 2.05 Total: -66.68 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.29 Total: -56.88 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Total: -60.28 5.56 -54.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.740 kcal (2) G-P(sol) polarization free energy of solvation -60.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds