Wall clock time and date at job start Mon Mar 30 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47593 * 2 1 4 4 N 1.31011 * 125.17642 * 90.02386 * 3 2 1 5 5 C 1.33015 * 109.98253 * 180.02562 * 4 3 2 6 6 C 1.39625 * 107.46345 * 359.97438 * 5 4 3 7 7 C 1.40059 * 127.06321 * 179.73731 * 6 5 4 8 8 H 1.08000 * 120.00003 * 180.02562 * 7 6 5 9 9 C 1.40071 * 120.00047 * 0.02957 * 7 6 5 10 10 N 1.30857 * 119.99880 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00317 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46860 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47249 * 119.99539 * 11 9 7 14 14 H 1.48504 * 109.46984 * 239.99873 * 11 9 7 15 15 N 1.35079 * 125.17745 * 270.05184 * 3 2 1 16 16 C 1.46495 * 126.48370 * 359.97438 * 15 3 2 17 17 C 1.53006 * 109.46734 * 270.02086 * 16 15 3 18 18 C 1.53002 * 109.46634 * 175.00015 * 17 16 15 19 19 C 1.52993 * 109.47328 * 294.99813 * 17 16 15 20 20 H 1.09005 * 109.46724 * 299.99879 * 1 2 3 21 21 H 1.09002 * 109.46715 * 59.99460 * 1 2 3 22 22 H 1.08992 * 109.46956 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46724 * 240.00121 * 2 1 3 24 24 H 1.08996 * 109.47551 * 120.00500 * 2 1 3 25 25 H 1.07997 * 126.27482 * 179.97438 * 5 4 3 26 26 H 0.96995 * 120.00274 * 180.02562 * 10 9 7 27 27 H 1.08998 * 109.47329 * 30.02015 * 16 15 3 28 28 H 1.09004 * 109.47239 * 150.02680 * 16 15 3 29 29 H 1.09001 * 109.46901 * 55.00727 * 17 16 15 30 30 H 1.09001 * 109.47625 * 60.00565 * 18 17 16 31 31 H 1.09007 * 109.47140 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47457 * 299.99856 * 18 17 16 33 33 H 1.09005 * 109.46583 * 60.00206 * 19 17 16 34 34 H 1.09003 * 109.47518 * 179.97438 * 19 17 16 35 35 H 1.09000 * 109.47146 * 300.00456 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2845 2.1322 1.0709 5 6 2.7119 3.3426 0.7222 6 6 2.7299 3.3949 -0.6729 7 6 3.1079 4.4812 -1.4721 8 1 3.0778 4.3961 -2.5483 9 6 3.5250 5.6779 -0.8756 10 7 3.5611 5.7811 0.4284 11 14 4.0298 7.1265 -1.9414 12 1 3.9011 6.7558 -3.3736 13 1 3.1500 8.2866 -1.6490 14 1 5.4400 7.4886 -1.6490 15 7 2.2910 2.1548 -1.1041 16 6 2.1366 1.7205 -2.4946 17 6 3.4430 1.0883 -2.9794 18 6 3.2442 0.5231 -4.3873 19 6 4.5440 2.1502 -3.0070 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.9933 4.1392 1.3950 26 1 3.8496 6.6099 0.8415 27 1 1.3324 0.9875 -2.5593 28 1 1.8955 2.5806 -3.1193 29 1 3.7306 0.2840 -2.3023 30 1 2.9566 1.3274 -5.0645 31 1 4.1747 0.0724 -4.7326 32 1 2.4598 -0.2334 -4.3677 33 1 4.6855 2.5529 -2.0039 34 1 5.4747 1.6998 -3.3519 35 1 4.2562 2.9545 -3.6841 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:39 Heat of formation + Delta-G solvation = 5.808425 kcal Electronic energy + Delta-G solvation = -15793.905759 eV Core-core repulsion = 13404.930044 eV Total energy + Delta-G solvation = -2388.975715 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.95971 -37.24177 -35.70638 -34.05771 -32.95059 -30.15247 -27.92843 -26.90147 -26.64178 -23.88645 -21.83778 -21.41775 -19.75271 -18.79206 -17.38813 -16.27687 -16.06067 -15.95159 -15.11346 -14.76174 -14.44735 -14.12195 -13.89843 -13.79481 -13.24560 -13.11644 -12.98117 -12.75418 -12.72861 -12.39990 -12.21824 -12.08277 -11.88851 -11.81220 -11.74680 -11.49231 -11.18771 -10.11624 -9.87153 -8.74426 -8.46631 -6.16702 1.29288 1.39944 1.54999 1.89513 2.20840 2.65217 2.80320 3.45851 3.84572 4.00531 4.04341 4.18228 4.28271 4.53446 4.54817 4.58786 4.77196 4.82774 4.83517 4.99361 5.04227 5.06525 5.07930 5.20553 5.23213 5.33992 5.40361 5.47126 5.55338 5.77903 5.94406 6.10445 6.61939 6.95775 7.07037 7.36863 8.09268 8.51156 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.011248 C = 0.008336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.525005 B = 2488.716706 C = 3358.261069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 C 0.095 3.905 4 N -0.525 5.525 5 C -0.187 4.187 6 C 0.165 3.835 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.022 3.978 10 N -0.839 5.839 11 Si 0.994 3.006 12 H -0.253 1.253 13 H -0.270 1.270 14 H -0.270 1.270 15 N -0.488 5.488 16 C 0.122 3.878 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.140 4.140 20 H 0.035 0.965 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.281 0.719 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -7.481 -10.264 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 C -0.161 4.161 4 N -0.245 5.245 5 C -0.333 4.333 6 C 0.052 3.948 7 C -0.489 4.489 8 H 0.099 0.901 9 C -0.190 4.190 10 N -0.468 5.468 11 Si 0.815 3.185 12 H -0.176 1.176 13 H -0.195 1.195 14 H -0.195 1.195 15 N -0.180 5.180 16 C -0.001 4.001 17 C -0.122 4.122 18 C -0.191 4.191 19 C -0.197 4.197 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.173 0.827 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.504 -7.674 -9.364 12.200 hybrid contribution 0.476 1.405 -0.488 1.561 sum -1.028 -6.269 -9.852 11.723 Atomic orbital electron populations 1.21664 0.94084 1.02454 1.00894 1.19729 0.96288 0.86676 1.02859 1.23049 1.13364 0.97817 0.81894 1.69350 1.18125 1.06244 1.30753 1.23145 1.20322 0.95781 0.94084 1.19127 0.96979 0.84991 0.93666 1.18658 1.41222 0.95222 0.93825 0.90136 1.26686 0.93717 1.02263 0.96343 1.69782 1.37323 1.27689 1.11968 0.84964 0.78226 0.76435 0.78868 1.17593 1.19546 1.19536 1.45122 1.54773 1.11757 1.06363 1.21756 0.98668 0.99877 0.79780 1.21446 0.94433 0.97535 0.98772 1.21718 1.02811 1.01081 0.93472 1.21814 0.98298 0.98442 1.01163 0.94616 0.93518 0.89314 0.89756 0.90687 0.82701 0.90826 0.88600 0.90968 0.92063 0.92127 0.91338 0.90964 0.95133 0.92086 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.90 71.98 0.71 -3.22 16 2 C -0.02 -0.57 6.01 29.85 0.18 -0.39 16 3 C 0.09 4.53 7.13 137.97 0.98 5.51 16 4 N -0.52 -30.00 11.18 -184.80 -2.07 -32.07 16 5 C -0.19 -11.46 10.88 84.85 0.92 -10.54 16 6 C 0.16 9.20 5.55 38.88 0.22 9.42 16 7 C -0.45 -24.18 7.57 23.16 0.18 -24.01 16 8 H 0.08 3.98 6.31 -2.91 -0.02 3.97 16 9 C 0.02 1.15 5.50 85.28 0.47 1.62 16 10 N -0.84 -46.53 10.35 21.86 0.23 -46.31 16 11 Si 0.99 39.22 29.56 68.60 2.03 41.24 16 12 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 13 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 14 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 15 N -0.49 -22.93 2.60 -505.03 -1.31 -24.24 16 16 C 0.12 4.28 4.97 86.38 0.43 4.71 16 17 C -0.10 -3.11 3.13 -10.79 -0.03 -3.14 16 18 C -0.13 -2.81 9.19 71.98 0.66 -2.15 16 19 C -0.14 -4.92 8.01 71.98 0.58 -4.34 16 20 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 2.43 7.66 -2.38 -0.02 2.41 16 24 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.16 10.13 5.78 -2.91 -0.02 10.11 16 26 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 27 H 0.10 2.80 7.63 -2.39 -0.02 2.78 16 28 H 0.07 2.60 7.50 -2.39 -0.02 2.58 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 1.36 5.94 -2.38 -0.01 1.34 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.83 7.49 -2.39 -0.02 1.81 16 Total: -1.00 -68.26 282.72 5.23 -63.04 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 1.06 Total: 24.86 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 5.29 Total: -26.53 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.15 Total: -102.61 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.24 kcal Total: -68.26 5.23 -63.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.844 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds