Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30494 * 1 3 3 Si 1.86803 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47285 * 300.00270 * 3 2 1 6 6 H 1.48505 * 109.46682 * 59.99785 * 3 2 1 7 7 C 1.40647 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.38837 * 120.00035 * 359.97438 * 7 2 1 10 10 S 1.75631 * 125.05702 * 0.02562 * 9 7 2 11 11 C 1.75502 * 91.68799 * 180.55363 * 10 9 7 12 12 C 1.35676 * 111.09018 * 359.97399 * 11 10 9 13 13 C 1.40171 * 125.06369 * 180.02562 * 9 7 2 14 14 C 1.42620 * 125.91921 * 359.32944 * 13 9 7 15 15 O 1.21492 * 120.92082 * 3.90192 * 14 13 9 16 16 C 1.50946 * 118.16015 * 183.88159 * 14 13 9 17 17 C 1.52932 * 110.36539 * 327.88292 * 16 14 13 18 18 N 1.41508 * 125.76117 * 178.91411 * 12 11 10 19 19 H 0.97000 * 120.00003 * 0.02562 * 1 2 3 20 20 H 1.07999 * 124.45726 * 179.97438 * 11 10 9 21 21 H 1.09003 * 109.32053 * 88.16029 * 16 14 13 22 22 H 1.09000 * 109.31769 * 207.61202 * 16 14 13 23 23 H 1.09001 * 109.43459 * 174.42132 * 17 16 14 24 24 H 1.08998 * 109.43584 * 294.29461 * 17 16 14 25 25 H 0.97001 * 121.92701 * 24.48564 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 3.6990 1.3463 0.0006 5 1 1.8803 2.3965 -1.2124 6 1 1.8802 2.3964 1.2125 7 6 2.0082 -1.2180 -0.0005 8 1 3.0882 -1.2180 -0.0001 9 6 1.3140 -2.4204 -0.0005 10 16 -0.4354 -2.5753 -0.0005 11 6 -0.3323 -4.3272 0.0164 12 6 0.9601 -4.7401 0.0209 13 6 1.9051 -3.6914 -0.0005 14 6 3.3051 -3.9631 -0.0141 15 8 4.1167 -3.0609 0.0438 16 6 3.7505 -5.4027 -0.1018 17 6 2.7456 -6.3147 0.6034 18 7 1.3984 -6.0851 0.0558 19 1 -0.4850 0.8400 -0.0004 20 1 -1.1853 -4.9895 0.0225 21 1 3.8278 -5.6931 -1.1496 22 1 4.7267 -5.5076 0.3717 23 1 3.0283 -7.3556 0.4465 24 1 2.7451 -6.0966 1.6713 25 1 0.8431 -6.8140 -0.2623 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171627.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = -33.101299 kcal Electronic energy + Delta-G solvation = -12960.569340 eV Core-core repulsion = 10643.274393 eV Total energy + Delta-G solvation = -2317.294948 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.61962 -35.87249 -34.76095 -32.92445 -30.03576 -28.30162 -25.46706 -23.72983 -21.28825 -19.72132 -18.18021 -16.99513 -15.77956 -15.35188 -14.87344 -14.14596 -13.86506 -13.48029 -12.82546 -12.52921 -12.18109 -12.10001 -11.80614 -11.57461 -11.18024 -10.81643 -10.53902 -10.38428 -10.11075 -9.81556 -9.27392 -8.46355 -7.92962 -7.29913 -7.22969 -6.22243 -4.78215 2.41090 2.87949 2.99376 3.04808 3.28230 3.57388 3.63895 3.90511 4.35477 4.64148 5.09522 5.39203 5.72425 5.84018 6.03268 6.15396 6.49249 6.60295 6.65919 7.05608 7.31278 7.49315 7.72592 7.92903 8.13699 8.37182 8.44620 8.78779 9.32555 9.53024 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.035157 B = 0.011726 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.243573 B = 2387.197796 C = 3146.951473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.046 3.954 3 Si 0.939 3.061 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.333 4.333 8 H 0.127 0.873 9 C 0.080 3.920 10 S 0.123 5.877 11 C -0.453 4.453 12 C 0.251 3.749 13 C -0.423 4.423 14 C 0.410 3.590 15 O -0.530 6.530 16 C -0.178 4.178 17 C 0.147 3.853 18 N -0.765 5.765 19 H 0.303 0.697 20 H 0.119 0.881 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 -3.030 0.087 3.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.172 1.172 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.145 0.855 9 C -0.043 4.043 10 S 0.379 5.621 11 C -0.591 4.591 12 C 0.145 3.855 13 C -0.432 4.432 14 C 0.300 3.700 15 O -0.417 6.417 16 C -0.217 4.217 17 C 0.021 3.979 18 N -0.404 5.404 19 H 0.117 0.883 20 H 0.137 0.863 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.331 -1.599 0.176 1.642 hybrid contribution 0.988 -0.996 -0.179 1.414 sum 0.657 -2.595 -0.003 2.677 Atomic orbital electron populations 1.68748 1.08245 1.31589 1.28540 1.26704 0.95101 1.03763 0.92453 0.85679 0.81267 0.77809 0.79101 1.17194 1.19036 1.19021 1.20097 0.97985 0.88323 1.30338 0.85548 1.21640 0.95235 0.94693 0.92690 1.84359 1.03963 0.94735 1.79016 1.24902 0.96680 1.02218 1.35303 1.17586 0.91450 0.83126 0.93347 1.18290 0.93952 0.91562 1.39420 1.19909 0.88273 0.88417 0.73431 1.90380 1.57123 1.48454 1.45785 1.22354 0.99458 0.97869 1.02052 1.21029 0.82861 0.97332 0.96699 1.44558 1.16856 1.04771 1.74168 0.88346 0.86341 0.90166 0.90330 0.91616 0.93419 0.77295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.42 10.58 55.59 0.59 -16.84 15 2 C 0.05 1.08 5.51 -17.21 -0.09 0.98 15 3 Si 0.94 17.61 29.57 -169.99 -5.03 12.59 15 4 H -0.25 -4.81 7.11 56.52 0.40 -4.41 15 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 6 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.33 -8.86 8.84 -38.45 -0.34 -9.20 15 8 H 0.13 3.48 5.76 -52.49 -0.30 3.18 15 9 C 0.08 2.18 6.19 -38.63 -0.24 1.94 15 10 S 0.12 3.09 20.13 -107.50 -2.16 0.93 15 11 C -0.45 -10.96 11.20 29.82 0.33 -10.62 15 12 C 0.25 6.05 6.66 -83.18 -0.55 5.50 15 13 C -0.42 -11.20 5.80 -106.37 -0.62 -11.82 15 14 C 0.41 10.28 6.93 -32.50 -0.23 10.05 15 15 O -0.53 -14.56 15.34 5.37 0.08 -14.48 15 16 C -0.18 -3.41 6.20 -27.80 -0.17 -3.58 15 17 C 0.15 2.52 6.97 -3.68 -0.03 2.49 15 18 N -0.76 -14.80 6.09 -57.87 -0.35 -15.15 15 19 H 0.30 6.19 8.29 -40.82 -0.34 5.85 15 20 H 0.12 2.63 8.06 -52.49 -0.42 2.21 15 21 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.39 6.46 8.96 -40.82 -0.37 6.10 15 LS Contribution 230.98 15.07 3.48 3.48 Total: -1.00 -29.50 230.98 -7.24 -36.74 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -1.92 Total: 6.99 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.93 Total: -14.25 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.24 Total: -31.99 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.08 Total: -14.48 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.16 Total: 0.93 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.50 -7.24 -36.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171627.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.640 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds