Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30494 * 1 3 3 Si 1.86803 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47285 * 300.00270 * 3 2 1 6 6 H 1.48505 * 109.46682 * 59.99785 * 3 2 1 7 7 C 1.40647 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.38837 * 120.00035 * 359.97438 * 7 2 1 10 10 S 1.75631 * 125.05702 * 0.02562 * 9 7 2 11 11 C 1.75502 * 91.68799 * 180.55363 * 10 9 7 12 12 C 1.35676 * 111.09018 * 359.97399 * 11 10 9 13 13 C 1.40171 * 125.06369 * 180.02562 * 9 7 2 14 14 C 1.42620 * 125.91921 * 359.32944 * 13 9 7 15 15 O 1.21492 * 120.92082 * 3.90192 * 14 13 9 16 16 C 1.50946 * 118.16015 * 183.88159 * 14 13 9 17 17 C 1.52932 * 110.36539 * 327.88292 * 16 14 13 18 18 N 1.41508 * 125.76117 * 178.91411 * 12 11 10 19 19 H 0.97000 * 120.00003 * 0.02562 * 1 2 3 20 20 H 1.07999 * 124.45726 * 179.97438 * 11 10 9 21 21 H 1.09003 * 109.32053 * 88.16029 * 16 14 13 22 22 H 1.09000 * 109.31769 * 207.61202 * 16 14 13 23 23 H 1.09001 * 109.43459 * 174.42132 * 17 16 14 24 24 H 1.08998 * 109.43584 * 294.29461 * 17 16 14 25 25 H 0.97001 * 121.92701 * 24.48564 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 3.6990 1.3463 0.0006 5 1 1.8803 2.3965 -1.2124 6 1 1.8802 2.3964 1.2125 7 6 2.0082 -1.2180 -0.0005 8 1 3.0882 -1.2180 -0.0001 9 6 1.3140 -2.4204 -0.0005 10 16 -0.4354 -2.5753 -0.0005 11 6 -0.3323 -4.3272 0.0164 12 6 0.9601 -4.7401 0.0209 13 6 1.9051 -3.6914 -0.0005 14 6 3.3051 -3.9631 -0.0141 15 8 4.1167 -3.0609 0.0438 16 6 3.7505 -5.4027 -0.1018 17 6 2.7456 -6.3147 0.6034 18 7 1.3984 -6.0851 0.0558 19 1 -0.4850 0.8400 -0.0004 20 1 -1.1853 -4.9895 0.0225 21 1 3.8278 -5.6931 -1.1496 22 1 4.7267 -5.5076 0.3717 23 1 3.0283 -7.3556 0.4465 24 1 2.7451 -6.0966 1.6713 25 1 0.8431 -6.8140 -0.2623 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261171627.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = -52.835427 kcal Electronic energy + Delta-G solvation = -12961.425076 eV Core-core repulsion = 10643.274393 eV Total energy + Delta-G solvation = -2318.150684 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.43779 -37.71903 -36.60298 -34.63842 -31.79494 -30.11426 -27.29454 -25.44559 -22.98757 -21.55582 -20.04989 -18.79549 -17.50570 -17.12904 -16.54734 -15.83908 -15.66036 -15.21637 -14.60001 -14.20986 -13.95662 -13.91403 -13.46398 -13.20858 -12.86578 -12.49542 -12.17890 -12.04640 -11.91143 -11.50067 -11.19379 -10.21770 -9.83033 -9.19907 -9.03425 -8.05745 -6.73976 0.57409 1.31665 1.37909 1.51431 1.52701 1.64238 2.01464 2.15539 2.49134 3.03023 3.17796 3.86138 4.27358 4.40498 4.57599 4.73700 4.77383 4.84382 5.04915 5.25075 5.48773 5.59978 5.88926 6.09158 6.15529 6.44549 6.66433 7.24125 7.45205 7.77777 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.035157 B = 0.011726 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.243573 B = 2387.197796 C = 3146.951473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.013 3.987 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.247 1.247 6 H -0.247 1.247 7 C -0.360 4.360 8 H 0.107 0.893 9 C 0.043 3.957 10 S 0.113 5.887 11 C -0.468 4.468 12 C 0.251 3.749 13 C -0.461 4.461 14 C 0.390 3.610 15 O -0.569 6.569 16 C -0.168 4.168 17 C 0.146 3.854 18 N -0.754 5.754 19 H 0.320 0.680 20 H 0.137 0.863 21 H 0.095 0.905 22 H 0.101 0.899 23 H 0.121 0.879 24 H 0.042 0.958 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -3.605 0.085 3.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.211 4.211 3 Si 0.827 3.173 4 H -0.188 1.188 5 H -0.170 1.170 6 H -0.170 1.170 7 C -0.393 4.393 8 H 0.125 0.875 9 C -0.079 4.079 10 S 0.369 5.631 11 C -0.606 4.606 12 C 0.143 3.857 13 C -0.470 4.470 14 C 0.283 3.717 15 O -0.459 6.459 16 C -0.207 4.207 17 C 0.021 3.979 18 N -0.394 5.394 19 H 0.134 0.866 20 H 0.155 0.845 21 H 0.113 0.887 22 H 0.119 0.881 23 H 0.139 0.861 24 H 0.060 0.940 25 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.251 -2.238 0.172 2.258 hybrid contribution 0.921 -0.824 -0.179 1.249 sum 0.670 -3.062 -0.007 3.134 Atomic orbital electron populations 1.68725 1.09150 1.33567 1.26886 1.27560 0.95984 1.06137 0.91469 0.84710 0.78690 0.73415 0.80481 1.18826 1.17013 1.17046 1.20217 0.97430 0.89943 1.31741 0.87519 1.22121 0.96571 0.95727 0.93520 1.84082 1.03012 0.96330 1.79696 1.25064 0.97545 1.01740 1.36271 1.17626 0.90893 0.84921 0.92296 1.18833 0.95523 0.92213 1.40391 1.20730 0.87724 0.91020 0.72258 1.90343 1.57703 1.50418 1.47478 1.22287 1.01052 0.93814 1.03573 1.21253 0.80994 0.99815 0.95854 1.44599 1.18005 1.03213 1.73569 0.86582 0.84535 0.88718 0.88102 0.86074 0.94008 0.75397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -35.33 10.58 21.95 0.23 -35.10 15 2 C 0.01 0.61 5.51 85.48 0.47 1.08 15 3 Si 1.01 35.69 29.57 68.60 2.03 37.71 15 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 15 5 H -0.25 -7.94 7.11 99.48 0.71 -7.23 15 6 H -0.25 -7.97 7.11 99.48 0.71 -7.26 15 7 C -0.36 -19.79 8.84 23.00 0.20 -19.59 15 8 H 0.11 6.19 5.76 -2.91 -0.02 6.18 15 9 C 0.04 2.40 6.19 22.88 0.14 2.54 15 10 S 0.11 5.78 20.13 -56.49 -1.14 4.65 15 11 C -0.47 -22.52 11.20 67.23 0.75 -21.76 15 12 C 0.25 11.94 6.66 37.70 0.25 12.19 15 13 C -0.46 -24.82 5.80 -21.00 -0.12 -24.94 15 14 C 0.39 19.78 6.93 26.86 0.19 19.97 15 15 O -0.57 -32.27 15.34 -3.69 -0.06 -32.33 15 16 C -0.17 -6.09 6.20 29.90 0.19 -5.90 15 17 C 0.15 4.50 6.97 86.22 0.60 5.10 15 18 N -0.75 -27.29 6.09 -337.01 -2.05 -29.34 15 19 H 0.32 12.72 8.29 -92.71 -0.77 11.95 15 20 H 0.14 5.91 8.06 -2.91 -0.02 5.89 15 21 H 0.09 3.18 8.14 -2.39 -0.02 3.16 15 22 H 0.10 3.20 8.14 -2.39 -0.02 3.18 15 23 H 0.12 2.49 8.14 -2.39 -0.02 2.48 15 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 25 H 0.41 12.12 8.96 -92.71 -0.83 11.29 15 Total: -1.00 -66.06 230.98 2.09 -63.97 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.40 Total: 21.75 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 2.67 Total: -31.32 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -1.82 Total: -64.44 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.06 Total: -32.33 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.14 Total: 4.65 kcal Total: -66.06 2.09 -63.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171627.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.138 kcal (2) G-P(sol) polarization free energy of solvation -66.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds