Wall clock time and date at job start Mon Mar 30 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48508 * 109.46980 * 269.99610 * 3 2 1 5 5 H 1.48496 * 109.47188 * 29.99270 * 3 2 1 6 6 H 1.48502 * 109.47388 * 149.99639 * 3 2 1 7 7 C 1.39945 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99851 * 200.02579 * 7 2 1 9 9 C 1.41071 * 119.99969 * 20.02397 * 7 2 1 10 10 C 1.41141 * 120.31422 * 31.70925 * 9 7 2 11 11 O 1.35295 * 132.98064 * 0.02562 * 10 9 7 12 12 C 1.34240 * 109.19483 * 179.97438 * 11 10 9 13 13 O 1.21609 * 125.33289 * 179.97438 * 12 11 10 14 14 N 1.34784 * 109.32698 * 359.97438 * 12 11 10 15 15 H 0.96996 * 126.28625 * 180.02562 * 14 12 11 16 16 C 1.38946 * 119.55567 * 179.97438 * 10 9 7 17 17 C 1.38966 * 120.24327 * 359.97438 * 16 10 9 18 18 C 1.38534 * 120.42196 * 359.97438 * 17 16 10 19 19 C 1.37940 * 120.45805 * 0.25366 * 18 17 16 20 20 F 1.35103 * 120.02082 * 179.74317 * 19 18 17 21 21 H 0.96997 * 119.99733 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.78498 * 180.02562 * 17 16 10 23 23 H 1.07994 * 119.76950 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0463 -1.4002 5 1 1.4402 2.6527 0.6999 6 1 3.5403 1.4402 0.7001 7 6 2.0084 -1.2120 0.0005 8 1 3.0395 -1.2401 0.3209 9 6 1.3670 -2.3969 -0.4173 10 6 0.3625 -2.3521 -1.4077 11 8 -0.1843 -1.3413 -2.1218 12 6 -1.1182 -1.8392 -2.9477 13 8 -1.7920 -1.1871 -3.7220 14 7 -1.1919 -3.1751 -2.7840 15 1 -1.7845 -3.7795 -3.2576 16 6 -0.2586 -3.5289 -1.8078 17 6 0.1069 -4.7421 -1.2373 18 6 1.0931 -4.7916 -0.2655 19 6 1.7215 -3.6369 0.1523 20 9 2.6784 -3.6948 1.1043 21 1 -0.4849 0.8400 -0.0004 22 1 -0.3804 -5.6524 -1.5541 23 1 1.3686 -5.7402 0.1711 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261171629.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:31 Heat of formation + Delta-G solvation = -95.618568 kcal Electronic energy + Delta-G solvation = -14984.554556 eV Core-core repulsion = 12098.335480 eV Total energy + Delta-G solvation = -2886.219076 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 223.043 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.23803 -43.79468 -39.16222 -37.77322 -36.48980 -35.06983 -31.80434 -29.46082 -27.38221 -24.28139 -23.77173 -23.06136 -20.08207 -19.53435 -18.12093 -18.03338 -17.63029 -16.86555 -16.57589 -16.28614 -15.97910 -15.30488 -14.87003 -14.09400 -13.88774 -13.66378 -13.53282 -13.25014 -12.92807 -12.78033 -12.27617 -12.00796 -11.64373 -11.48174 -11.05220 -9.47997 -8.93848 -8.78481 -6.56162 0.46439 0.59023 1.33820 1.40204 1.49099 1.60131 1.66698 2.13414 2.29713 2.52298 3.21037 3.85140 4.04750 4.26914 4.42631 4.63409 4.92996 5.07109 5.32135 5.41356 5.52225 5.75131 5.94905 6.18644 6.33237 6.61955 6.73355 6.91553 8.12081 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.016342 C = 0.009710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.843969 B = 1712.940132 C = 2882.874023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.482 4.482 8 H 0.090 0.910 9 C 0.089 3.911 10 C -0.040 4.040 11 O -0.223 6.223 12 C 0.613 3.387 13 O -0.556 6.556 14 N -0.625 5.625 15 H 0.449 0.551 16 C 0.081 3.919 17 C -0.184 4.184 18 C -0.082 4.082 19 C -0.037 4.037 20 F -0.155 7.155 21 H 0.293 0.707 22 H 0.163 0.837 23 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -6.326 -0.811 6.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.172 1.172 7 C -0.510 4.510 8 H 0.108 0.892 9 C 0.085 3.915 10 C -0.087 4.087 11 O -0.125 6.125 12 C 0.368 3.632 13 O -0.447 6.447 14 N -0.283 5.283 15 H 0.294 0.706 16 C -0.018 4.018 17 C -0.206 4.206 18 C -0.101 4.101 19 C -0.058 4.058 20 F -0.134 7.134 21 H 0.104 0.896 22 H 0.181 0.819 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.189 -5.472 -1.099 5.584 hybrid contribution -0.082 0.736 -0.077 0.744 sum 0.107 -4.736 -1.177 4.881 Atomic orbital electron populations 1.69699 1.09250 1.31590 1.30967 1.26747 0.95384 1.04811 0.91340 0.85184 0.79501 0.75717 0.79459 1.19252 1.18934 1.17194 1.19690 0.99688 0.92144 1.39449 0.89167 1.16724 0.90819 0.93833 0.90134 1.18876 1.05377 0.82690 1.01717 1.84903 1.46149 1.35280 1.46206 1.18983 0.80685 0.82043 0.81482 1.91009 1.48010 1.64701 1.40939 1.43340 1.38323 1.07870 1.38756 0.70551 1.18629 0.93316 0.96043 0.93830 1.19580 1.04053 0.94135 1.02841 1.20787 0.95521 0.96884 0.96950 1.17399 0.98070 0.93991 0.96362 1.91304 1.62412 1.97046 1.62637 0.89630 0.81949 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.91 10.86 21.83 0.24 -41.67 14 2 C 0.04 1.84 4.91 85.25 0.42 2.26 14 3 Si 0.98 38.85 29.60 68.60 2.03 40.88 14 4 H -0.27 -10.66 7.11 99.48 0.71 -9.96 14 5 H -0.26 -9.94 7.11 99.48 0.71 -9.24 14 6 H -0.25 -9.30 7.11 99.48 0.71 -8.60 14 7 C -0.48 -25.29 8.67 23.38 0.20 -25.08 14 8 H 0.09 4.59 7.87 -2.91 -0.02 4.57 14 9 C 0.09 4.53 5.48 -21.20 -0.12 4.41 14 10 C -0.04 -1.96 6.21 23.15 0.14 -1.82 14 11 O -0.22 -11.65 8.46 11.26 0.10 -11.56 14 12 C 0.61 28.45 9.45 129.79 1.23 29.68 14 13 O -0.56 -27.63 18.05 19.15 0.35 -27.29 14 14 N -0.63 -22.84 6.23 -429.99 -2.68 -25.52 14 15 H 0.45 12.03 8.96 -92.71 -0.83 11.20 14 16 C 0.08 3.22 7.25 38.25 0.28 3.50 14 17 C -0.18 -6.07 10.07 22.51 0.23 -5.84 14 18 C -0.08 -2.87 9.99 22.27 0.22 -2.65 14 19 C -0.04 -1.65 7.30 22.87 0.17 -1.49 14 20 F -0.15 -6.90 16.79 44.97 0.75 -6.15 14 21 H 0.29 14.42 8.30 -92.71 -0.77 13.65 14 22 H 0.16 3.80 8.06 -2.91 -0.02 3.78 14 23 H 0.16 4.29 8.06 -2.91 -0.02 4.27 14 Total: -1.00 -62.66 221.88 4.00 -58.66 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.45 Total: 9.67 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 2.77 Total: 2.98 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -2.44 Total: -67.19 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: 0.44 Total: -38.85 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.75 Total: -6.15 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -62.66 4.00 -58.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171629.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.961 kcal (2) G-P(sol) polarization free energy of solvation -62.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds