Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.30150 * 125.20511 * 60.02516 * 4 2 1 6 6 C 1.35968 * 109.13845 * 179.97438 * 5 4 2 7 7 C 1.41221 * 126.44348 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00429 * 180.02562 * 7 6 5 9 9 C 1.39722 * 119.99856 * 0.02585 * 7 6 5 10 10 N 1.31018 * 119.99896 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99781 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47219 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.46982 * 120.00300 * 11 9 7 14 14 H 1.48498 * 109.46910 * 240.00037 * 11 9 7 15 15 C 1.39094 * 107.11725 * 0.02562 * 6 5 4 16 16 N 1.35971 * 125.20311 * 239.71933 * 4 2 1 17 17 C 1.46502 * 126.10893 * 359.97438 * 16 4 2 18 18 C 1.52994 * 109.47223 * 119.99830 * 17 16 4 19 19 C 1.53007 * 109.46952 * 239.99779 * 17 16 4 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.96998 * 119.99550 * 179.97438 * 10 9 7 28 28 H 1.07999 * 126.81147 * 179.97438 * 15 6 5 29 29 H 1.09004 * 109.46964 * 359.97438 * 17 16 4 30 30 H 1.09004 * 109.47217 * 60.00083 * 18 17 16 31 31 H 1.09006 * 109.47230 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47647 * 299.99734 * 18 17 16 33 33 H 1.08999 * 109.46939 * 300.00413 * 19 17 16 34 34 H 1.09000 * 109.46982 * 59.99711 * 19 17 16 35 35 H 1.08996 * 109.46884 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7815 -0.3549 -2.4571 6 6 2.3947 -1.2214 -3.3066 7 6 2.3631 -1.1766 -4.7178 8 1 2.8905 -1.9226 -5.2937 9 6 1.6494 -0.1671 -5.3688 10 7 1.0101 0.7382 -4.6701 11 14 1.6082 -0.1074 -7.2354 12 1 2.4046 -1.2342 -7.7844 13 1 0.2035 -0.2206 -7.7033 14 1 2.1833 1.1796 -7.7023 15 6 3.0581 -2.1611 -2.5245 16 7 2.8218 -1.8174 -1.2290 17 6 3.3255 -2.5171 -0.0445 18 6 2.8212 -3.9615 -0.0525 19 6 4.8554 -2.5110 -0.0608 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 0.5150 1.4392 -5.1222 28 1 3.6475 -2.9952 -2.8757 29 1 2.9699 -2.0127 0.8540 30 1 3.1770 -4.4657 -0.9510 31 1 3.1956 -4.4820 0.8291 32 1 1.7312 -3.9660 -0.0409 33 1 5.2112 -3.0151 -0.9593 34 1 5.2147 -1.4819 -0.0552 35 1 5.2302 -3.0311 0.8207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = 17.237115 kcal Electronic energy + Delta-G solvation = -15640.692733 eV Core-core repulsion = 13252.212603 eV Total energy + Delta-G solvation = -2388.480130 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.98640 -36.68295 -36.09611 -34.69566 -31.09320 -29.86749 -28.15717 -27.92123 -26.93536 -23.48871 -22.74831 -20.92472 -19.52563 -18.88582 -17.04911 -16.42634 -15.70501 -15.67416 -15.10092 -14.88262 -14.47302 -14.17245 -14.04797 -13.52158 -13.29918 -13.10178 -12.92645 -12.79282 -12.64866 -12.44591 -12.24593 -12.10298 -12.07282 -11.98226 -11.68995 -11.46273 -11.04117 -9.81616 -9.67995 -8.77398 -8.15639 -5.99884 1.34857 1.40729 1.55719 1.78825 2.34948 2.51115 2.72731 3.78996 3.79601 3.83603 3.99700 4.11231 4.26322 4.40211 4.54680 4.58598 4.68899 4.76234 4.84611 4.87012 4.95591 4.99811 5.04989 5.09374 5.17692 5.27683 5.36353 5.46395 5.50392 5.66227 6.01157 6.13847 6.48943 7.02697 7.22208 7.41785 8.25816 8.80121 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.009590 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.025804 B = 2919.068264 C = 3588.414297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.001 3.999 3 C -0.126 4.126 4 C 0.162 3.838 5 N -0.494 5.494 6 C 0.139 3.861 7 C -0.494 4.494 8 H 0.068 0.932 9 C 0.025 3.975 10 N -0.815 5.815 11 Si 0.976 3.024 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.272 1.272 15 C -0.213 4.213 16 N -0.455 5.455 17 C 0.120 3.880 18 C -0.149 4.149 19 C -0.149 4.149 20 H 0.033 0.967 21 H 0.089 0.911 22 H 0.042 0.958 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -3.890 12.018 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.019 4.019 3 C -0.184 4.184 4 C -0.100 4.100 5 N -0.217 5.217 6 C 0.015 3.985 7 C -0.530 4.530 8 H 0.087 0.913 9 C -0.189 4.189 10 N -0.443 5.443 11 Si 0.799 3.201 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.198 1.198 15 C -0.341 4.341 16 N -0.144 5.144 17 C 0.018 3.982 18 C -0.207 4.207 19 C -0.207 4.207 20 H 0.053 0.947 21 H 0.108 0.892 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.164 0.836 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.252 -3.137 11.883 12.495 hybrid contribution 0.477 -0.671 -1.197 1.453 sum 2.729 -3.809 10.686 11.668 Atomic orbital electron populations 1.21647 0.93602 1.01152 1.02010 1.19540 0.96329 0.95423 0.90656 1.21646 1.00031 0.94732 1.02010 1.24116 0.98852 0.90426 0.96593 1.70988 1.24804 1.27623 0.98279 1.18924 0.94749 0.91029 0.93815 1.18773 1.31728 1.12507 0.89965 0.91341 1.26610 0.93674 0.94285 1.04295 1.70260 1.24998 1.11467 1.37536 0.85261 0.78430 0.78692 0.77740 1.18385 1.19755 1.19751 1.22258 1.19420 1.08638 0.83780 1.45055 1.40335 1.23428 1.05628 1.21542 0.95610 0.94069 0.87023 1.22065 1.00919 0.94451 1.03270 1.22066 0.93311 1.02053 1.03271 0.94737 0.89177 0.93881 0.88423 0.89185 0.93891 0.94734 0.92507 0.83639 0.87424 0.93432 0.87913 0.93535 0.93441 0.93556 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.17 71.98 0.66 -3.57 16 2 C 0.00 0.02 3.26 -11.54 -0.04 -0.02 16 3 C -0.13 -4.23 9.17 71.98 0.66 -3.57 16 4 C 0.16 7.62 6.38 137.93 0.88 8.50 16 5 N -0.49 -28.94 9.50 -179.79 -1.71 -30.64 16 6 C 0.14 8.44 6.69 39.44 0.26 8.70 16 7 C -0.49 -30.39 9.38 23.36 0.22 -30.17 16 8 H 0.07 4.03 7.84 -2.91 -0.02 4.01 16 9 C 0.02 1.45 5.49 85.17 0.47 1.91 16 10 N -0.81 -49.99 11.94 21.79 0.26 -49.73 16 11 Si 0.98 44.24 29.56 68.60 2.03 46.27 16 12 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C -0.21 -10.93 10.60 84.24 0.89 -10.03 16 16 N -0.45 -19.62 2.61 -488.07 -1.27 -20.89 16 17 C 0.12 3.57 3.52 44.99 0.16 3.73 16 18 C -0.15 -3.85 9.24 71.98 0.67 -3.19 16 19 C -0.15 -3.86 9.25 71.98 0.67 -3.19 16 20 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.10 2.70 6.26 -2.39 -0.01 2.68 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.27 14.98 8.30 -92.71 -0.77 14.21 16 28 H 0.15 6.95 8.06 -2.91 -0.02 6.93 16 29 H 0.11 2.68 6.22 -2.38 -0.01 2.67 16 30 H 0.05 1.36 7.94 -2.38 -0.02 1.34 16 31 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.36 7.94 -2.39 -0.02 1.34 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -75.33 291.07 5.85 -69.48 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.04 Total: 16.40 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 5.50 Total: -30.89 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -2.72 Total: -101.26 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -75.33 5.85 -69.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.721 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds