Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46575 * 2 1 4 4 C 1.50700 * 109.46940 * 119.99177 * 2 1 3 5 5 H 1.08008 * 119.99321 * 90.70260 * 4 2 1 6 6 C 1.37870 * 120.00501 * 270.69941 * 4 2 1 7 7 N 1.31511 * 119.99990 * 6.86932 * 6 4 2 8 8 Si 1.86809 * 120.00159 * 186.87571 * 6 4 2 9 9 H 1.48502 * 109.47080 * 179.97438 * 8 6 4 10 10 H 1.48505 * 109.46460 * 299.99828 * 8 6 4 11 11 H 1.48500 * 109.47084 * 59.99511 * 8 6 4 12 12 C 1.50694 * 109.47340 * 239.99872 * 2 1 3 13 13 C 1.34670 * 125.99158 * 324.71366 * 12 2 1 14 14 N 1.36880 * 106.81889 * 179.85133 * 13 12 2 15 15 C 1.46497 * 126.39953 * 180.11989 * 14 13 12 16 16 C 1.52994 * 109.47414 * 180.31888 * 15 14 13 17 17 C 1.52998 * 109.47059 * 300.32356 * 15 14 13 18 18 C 1.53002 * 109.46845 * 60.31924 * 15 14 13 19 19 C 1.35042 * 107.20604 * 0.41023 * 14 13 12 20 20 N 1.30502 * 108.70098 * 359.74617 * 19 14 13 21 21 H 1.09000 * 109.47039 * 185.68039 * 1 2 3 22 22 H 1.08991 * 109.47102 * 305.68435 * 1 2 3 23 23 H 1.09002 * 109.46619 * 65.68424 * 1 2 3 24 24 H 0.96998 * 120.00234 * 356.07622 * 7 6 4 25 25 H 1.07997 * 126.58517 * 359.96358 * 13 12 2 26 26 H 1.08997 * 109.47253 * 60.00283 * 16 15 14 27 27 H 1.09004 * 109.47273 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.47484 * 300.00360 * 16 15 14 29 29 H 1.09000 * 109.47439 * 59.99686 * 17 15 14 30 30 H 1.09004 * 109.47110 * 179.97438 * 17 15 14 31 31 H 1.08997 * 109.46936 * 299.99307 * 17 15 14 32 32 H 1.09001 * 109.47517 * 60.00140 * 18 15 14 33 33 H 1.09004 * 109.46936 * 180.02562 * 18 15 14 34 34 H 1.09000 * 109.47199 * 300.00036 * 18 15 14 35 35 H 1.07997 * 125.65375 * 179.72404 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.2231 -1.7729 1.2006 6 6 2.2484 -0.0036 2.3945 7 7 1.8901 1.2593 2.4732 8 14 3.0502 -0.8400 3.8599 9 1 3.1696 0.1291 4.9788 10 1 2.2172 -1.9922 4.2889 11 1 4.4015 -1.3218 3.4765 12 6 2.0324 -0.7104 -1.2304 13 6 1.4577 -1.7768 -1.8186 14 7 2.2328 -2.0982 -2.9001 15 6 1.9962 -3.1926 -3.8448 16 6 3.1047 -3.2048 -4.8992 17 6 1.9936 -4.5245 -3.0919 18 6 0.6429 -2.9913 -4.5298 19 6 3.2599 -1.2220 -2.9298 20 7 3.1336 -0.3950 -1.9283 21 1 -0.3633 -1.0226 0.1017 22 1 -0.3633 0.5994 0.8346 23 1 -0.3632 0.4232 -0.9365 24 1 1.5263 1.7096 1.6949 25 1 0.5572 -2.2804 -1.4995 26 1 4.0687 -3.3482 -4.4112 27 1 2.9284 -4.0189 -5.6023 28 1 3.1066 -2.2559 -5.4355 29 1 1.2038 -4.5158 -2.3407 30 1 1.8170 -5.3388 -3.7948 31 1 2.9576 -4.6679 -2.6040 32 1 0.6447 -2.0424 -5.0661 33 1 0.4667 -3.8059 -5.2323 34 1 -0.1468 -2.9826 -3.7786 35 1 4.0545 -1.2082 -3.6611 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261202553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = 41.392576 kcal Electronic energy + Delta-G solvation = -15449.120792 eV Core-core repulsion = 13061.688121 eV Total energy + Delta-G solvation = -2387.432671 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50280 -36.94980 -34.34060 -30.97514 -30.36853 -28.33054 -27.53605 -26.64218 -24.65036 -22.52675 -21.35460 -19.23856 -18.86291 -16.93258 -16.22016 -15.12194 -14.27141 -13.88796 -13.64004 -13.57461 -13.42916 -13.21080 -12.70123 -12.46272 -12.31804 -12.11654 -11.96551 -11.36248 -11.17596 -11.06507 -11.02616 -10.62537 -10.46583 -10.02251 -9.70022 -8.97132 -8.92804 -8.47643 -8.17413 -7.37936 -6.21363 -3.89419 2.79164 3.21572 3.50537 3.55463 3.72773 4.11156 4.42813 4.65061 4.67003 4.74477 5.14785 5.27173 5.33290 5.40898 5.46901 5.52744 5.55055 5.59513 5.75313 5.81579 5.92824 6.05879 6.24147 6.57689 6.67580 6.79982 6.98333 7.01650 7.46583 7.53581 7.85391 7.96086 8.37354 8.58864 9.01698 9.03013 9.80476 11.17582 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.007260 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.026665 B = 3855.814497 C = 4007.286673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.095 3.905 3 H 0.044 0.956 4 C -0.577 4.577 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 1.067 2.933 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.289 1.289 12 C 0.063 3.937 13 C -0.077 4.077 14 N -0.458 5.458 15 C 0.156 3.844 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.154 4.154 19 C 0.157 3.843 20 N -0.492 5.492 21 H 0.037 0.963 22 H 0.047 0.953 23 H 0.017 0.983 24 H 0.270 0.730 25 H 0.160 0.840 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -10.720 -14.483 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.062 0.938 4 C -0.616 4.616 5 H 0.064 0.936 6 C -0.184 4.184 7 N -0.550 5.550 8 Si 0.896 3.104 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.216 1.216 12 C -0.065 4.065 13 C -0.207 4.207 14 N -0.145 5.145 15 C 0.071 3.929 16 C -0.213 4.213 17 C -0.213 4.213 18 C -0.212 4.212 19 C -0.124 4.124 20 N -0.211 5.211 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.177 0.823 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.034 -9.946 -12.813 16.221 hybrid contribution -0.927 -1.095 -1.865 2.353 sum -0.961 -11.042 -14.678 18.392 Atomic orbital electron populations 1.21881 0.98874 0.99671 0.98159 1.17365 0.90949 0.95984 0.88224 0.93772 1.21793 1.47923 0.95752 0.96112 0.93644 1.25762 0.95386 0.96240 1.01003 1.70780 1.40268 1.11397 1.32594 0.83574 0.76206 0.74999 0.75597 1.20823 1.21635 1.21611 1.21424 0.91900 0.95838 0.97374 1.22162 1.01681 1.03694 0.93127 1.45545 1.21699 1.24888 1.22347 1.20688 0.96626 0.86584 0.89011 1.22102 0.97986 1.03194 0.98001 1.22167 1.03435 0.95040 1.00679 1.22158 0.95645 1.02513 1.00882 1.24706 0.94895 0.91423 1.01327 1.70234 1.19347 1.25940 1.05536 0.94384 0.93355 0.96350 0.91827 0.82289 0.91388 0.90653 0.91457 0.91604 0.91163 0.91759 0.91884 0.91134 0.91668 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.62 37.16 0.32 -2.71 16 2 C 0.09 2.56 2.43 -92.93 -0.23 2.33 16 3 H 0.04 1.32 6.78 -51.93 -0.35 0.96 16 4 C -0.58 -17.00 8.29 -34.44 -0.29 -17.29 16 5 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 6 C 0.02 0.59 5.45 -17.82 -0.10 0.49 16 7 N -0.91 -28.50 13.62 55.43 0.76 -27.74 16 8 Si 1.07 26.35 29.91 -169.99 -5.08 21.26 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.06 1.54 6.00 -82.85 -0.50 1.05 16 13 C -0.08 -1.56 9.77 -16.56 -0.16 -1.73 16 14 N -0.46 -7.63 2.61 -104.64 -0.27 -7.90 16 15 C 0.16 1.82 1.22 -131.82 -0.16 1.66 16 16 C -0.16 -1.40 7.36 37.15 0.27 -1.13 16 17 C -0.16 -1.70 8.53 37.16 0.32 -1.38 16 18 C -0.15 -1.58 8.54 37.16 0.32 -1.27 16 19 C 0.16 2.90 11.50 -90.37 -1.04 1.86 16 20 N -0.49 -11.69 11.25 -10.87 -0.12 -11.81 16 21 H 0.04 0.84 7.58 -51.93 -0.39 0.45 16 22 H 0.05 1.19 7.97 -51.93 -0.41 0.78 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.27 8.41 6.53 -40.82 -0.27 8.14 16 25 H 0.16 2.98 7.55 -52.49 -0.40 2.59 16 26 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 29 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.73 7.96 -51.93 -0.41 0.31 16 35 H 0.19 2.68 7.15 -52.49 -0.38 2.30 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -34.03 288.28 -7.20 -41.24 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.58 Total: -1.29 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -1.24 Total: -18.10 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.36 Total: -47.45 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.08 Total: 21.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.03 -7.20 -41.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.629 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds