Wall clock time and date at job start Mon Mar 30 2020 03:03:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 N 1.39485 * 125.87290 * 2 1
4 4 C 1.27514 * 114.30965 * 174.68510 * 3 2 1
5 5 C 1.50521 * 108.67098 * 359.55776 * 4 3 2
6 6 H 1.08993 * 104.66726 * 254.69882 * 5 4 3
7 7 C 1.49456 * 114.02935 * 139.12901 * 5 4 3
8 8 C 1.52521 * 113.25751 * 266.21134 * 7 5 4
9 9 C 1.53442 * 107.62659 * 305.17237 * 8 7 5
10 10 C 1.52232 * 108.06382 * 68.41798 * 9 8 7
11 11 H 1.09004 * 108.80626 * 62.25804 * 10 9 8
12 12 C 1.52998 * 108.80983 * 180.52674 * 10 9 8
13 13 C 1.50699 * 109.47219 * 297.48999 * 12 10 9
14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10
15 15 C 1.37871 * 120.00169 * 180.02562 * 13 12 10
16 16 N 1.31514 * 120.00264 * 180.02562 * 15 13 12
17 17 Si 1.86803 * 119.99873 * 359.97438 * 15 13 12
18 18 H 1.48500 * 109.47110 * 90.00491 * 17 15 13
19 19 H 1.48498 * 109.47036 * 210.00166 * 17 15 13
20 20 H 1.48493 * 109.47290 * 330.00322 * 17 15 13
21 21 C 1.48456 * 125.87155 * 180.30651 * 2 1 3
22 22 H 1.09000 * 109.92725 * 305.76730 * 21 2 1
23 23 H 1.08997 * 109.47141 * 214.77264 * 1 2 3
24 24 H 1.09001 * 109.46715 * 94.77674 * 1 2 3
25 25 H 1.09003 * 109.46885 * 334.77567 * 1 2 3
26 26 H 1.08001 * 125.65230 * 179.31271 * 4 3 2
27 27 H 1.08997 * 108.72502 * 145.23778 * 7 5 4
28 28 H 1.08996 * 108.63034 * 27.12129 * 7 5 4
29 29 H 1.09001 * 109.82982 * 185.64077 * 8 7 5
30 30 H 1.09000 * 109.88026 * 64.73409 * 8 7 5
31 31 H 1.08999 * 109.74211 * 308.77747 * 9 8 7
32 32 H 1.09001 * 109.78723 * 188.08012 * 9 8 7
33 33 H 1.09003 * 109.47000 * 57.48843 * 12 10 9
34 34 H 1.08997 * 109.47166 * 177.48837 * 12 10 9
35 35 H 0.97001 * 119.99906 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2824 1.1303 0.0000
4 6 3.5276 0.8776 0.1076
5 6 3.7095 -0.6128 0.2137
6 1 3.9435 -0.7883 1.2636
7 6 4.8705 -1.1412 -0.5652
8 6 4.4905 -1.6200 -1.9625
9 6 3.3637 -2.6504 -1.8102
10 6 2.1193 -1.9206 -1.3241
11 1 1.8233 -1.1905 -2.0775
12 6 0.9872 -2.9355 -1.1536
13 6 0.6634 -3.5558 -2.4882
14 1 1.2101 -3.2558 -3.3700
15 6 -0.3315 -4.5055 -2.5838
16 7 -0.6138 -5.0473 -3.7485
17 14 -1.2775 -5.0239 -1.0588
18 1 -2.4686 -4.1522 -0.8950
19 1 -1.7138 -6.4360 -1.2031
20 1 -0.4024 -4.8956 0.1340
21 6 2.3349 -1.2030 -0.0064
22 1 2.0673 -1.8594 0.8215
23 1 -0.3633 -0.8441 0.5861
24 1 -0.3633 -0.0856 -1.0241
25 1 -0.3633 0.9297 0.4380
26 1 4.3203 1.6111 0.1168
27 1 5.3093 -1.9748 -0.0169
28 1 5.6166 -0.3519 -0.6566
29 1 5.3529 -2.0834 -2.4418
30 1 4.1431 -0.7780 -2.5612
31 1 3.6538 -3.4084 -1.0826
32 1 3.1620 -3.1215 -2.7722
33 1 1.2990 -3.7140 -0.4572
34 1 0.1032 -2.4315 -0.7631
35 1 -1.3140 -5.7152 -3.8158
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261203436.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:35
Heat of formation + Delta-G solvation = 24.859241 kcal
Electronic energy + Delta-G solvation = -15889.824635 eV
Core-core repulsion = 13501.675025 eV
Total energy + Delta-G solvation = -2388.149610 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.53970 -37.40248 -35.52059 -34.21883 -32.15670 -30.89366 -29.29740 -26.59770
-24.82569 -23.23090 -22.06074 -21.15281 -19.94972 -18.88879 -17.11672 -16.51148
-16.32208 -15.93593 -15.30353 -14.97444 -14.79902 -14.47274 -14.01946 -13.83115
-13.55157 -13.45869 -12.99409 -12.80114 -12.62065 -12.28788 -12.15269 -11.99748
-11.76295 -11.62966 -11.32917 -11.04029 -10.83245 -10.75381 -10.59257 -8.51628
-8.29264 -6.31593 1.31538 1.33236 1.44754 1.58843 2.01109 2.33727
3.05615 3.50944 3.69434 3.85158 4.05781 4.18068 4.31468 4.39288
4.46605 4.53679 4.63971 4.69818 4.79236 4.84728 4.93333 5.04855
5.08323 5.13824 5.22359 5.32399 5.40525 5.48293 5.56967 5.61872
5.71329 5.81864 6.30416 6.44671 6.74715 7.31356 7.32557 8.87594
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.032156 B = 0.009596 C = 0.008134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.546981 B = 2917.071235 C = 3441.649861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.147 3.853
2 N -0.571 5.571
3 N -0.273 5.273
4 C 0.032 3.968
5 C -0.094 4.094
6 H 0.092 0.908
7 C -0.088 4.088
8 C -0.114 4.114
9 C -0.101 4.101
10 C -0.068 4.068
11 H 0.030 0.970
12 C -0.005 4.005
13 C -0.516 4.516
14 H 0.030 0.970
15 C 0.003 3.997
16 N -0.953 5.953
17 Si 0.945 3.055
18 H -0.268 1.268
19 H -0.284 1.284
20 H -0.247 1.247
21 C 0.137 3.863
22 H 0.068 0.932
23 H 0.067 0.933
24 H 0.024 0.976
25 H 0.081 0.919
26 H 0.228 0.772
27 H 0.078 0.922
28 H 0.099 0.901
29 H 0.079 0.921
30 H 0.044 0.956
31 H 0.063 0.937
32 H 0.038 0.962
33 H 0.016 0.984
34 H 0.013 0.987
35 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.491 9.333 11.303 18.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.005 3.995
2 N -0.390 5.390
3 N -0.075 5.075
4 C -0.184 4.184
5 C -0.115 4.115
6 H 0.110 0.890
7 C -0.126 4.126
8 C -0.152 4.152
9 C -0.140 4.140
10 C -0.088 4.088
11 H 0.049 0.951
12 C -0.042 4.042
13 C -0.554 4.554
14 H 0.049 0.951
15 C -0.193 4.193
16 N -0.594 5.594
17 Si 0.769 3.231
18 H -0.193 1.193
19 H -0.210 1.210
20 H -0.171 1.171
21 C 0.033 3.967
22 H 0.086 0.914
23 H 0.085 0.915
24 H 0.043 0.957
25 H 0.100 0.900
26 H 0.245 0.755
27 H 0.096 0.904
28 H 0.118 0.882
29 H 0.098 0.902
30 H 0.063 0.937
31 H 0.082 0.918
32 H 0.057 0.943
33 H 0.035 0.965
34 H 0.031 0.969
35 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 9.395 9.893 11.169 17.632
hybrid contribution -0.692 -1.384 -0.173 1.557
sum 8.702 8.510 10.995 16.402
Atomic orbital electron populations
1.21109 0.75958 1.02396 1.00021 1.51484 1.03922 0.99324 1.84235
1.73688 1.06385 1.16421 1.11042 1.27167 0.93829 0.96229 1.01164
1.20341 0.94216 0.93989 1.03001 0.89004 1.20538 0.95662 1.02129
0.94248 1.21538 0.97889 0.97801 0.97934 1.21375 0.94425 0.97753
1.00409 1.20818 0.96248 0.96184 0.95566 0.95130 1.19675 0.94818
0.94559 0.95127 1.21396 1.17966 1.21489 0.94553 0.95133 1.25975
0.98074 0.96131 0.99113 1.70072 1.33114 1.29834 1.26394 0.85729
0.79364 0.77533 0.80470 1.19275 1.20990 1.17103 1.21446 0.90547
0.88034 0.96716 0.91407 0.91473 0.95696 0.90005 0.75547 0.90358
0.88233 0.90193 0.93665 0.91849 0.94311 0.96534 0.96868 0.92658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.15 4.84 10.17 127.77 1.30 6.14 16
2 N -0.57 -19.79 3.84 -517.55 -1.99 -21.78 16
3 N -0.27 -8.55 12.01 -50.88 -0.61 -9.16 16
4 C 0.03 0.73 11.61 88.68 1.03 1.76 16
5 C -0.09 -2.29 2.60 -13.32 -0.03 -2.33 16
6 H 0.09 1.92 8.02 -2.39 -0.02 1.90 16
7 C -0.09 -1.78 5.39 29.30 0.16 -1.62 16
8 C -0.11 -3.12 6.06 30.58 0.19 -2.94 16
9 C -0.10 -3.76 4.97 30.49 0.15 -3.61 16
10 C -0.07 -2.77 1.66 -11.51 -0.02 -2.79 16
11 H 0.03 1.43 7.92 -2.38 -0.02 1.41 16
12 C 0.00 -0.22 3.24 29.85 0.10 -0.12 16
13 C -0.52 -30.22 8.92 25.60 0.23 -29.99 16
14 H 0.03 1.99 7.10 -2.91 -0.02 1.97 16
15 C 0.00 0.19 5.47 84.65 0.46 0.66 16
16 N -0.95 -60.85 13.96 21.44 0.30 -60.55 16
17 Si 0.95 44.99 27.47 68.60 1.88 46.87 16
18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16
20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16
21 C 0.14 4.59 3.22 43.56 0.14 4.73 16
22 H 0.07 2.28 7.80 -2.39 -0.02 2.27 16
23 H 0.07 2.10 7.56 -2.39 -0.02 2.09 16
24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
26 H 0.23 3.02 8.06 -2.91 -0.02 2.99 16
27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
28 H 0.10 1.40 7.87 -2.39 -0.02 1.38 16
29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
30 H 0.04 1.36 8.11 -2.39 -0.02 1.34 16
31 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16
32 H 0.04 1.71 6.75 -2.39 -0.02 1.69 16
33 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16
34 H 0.01 0.62 5.67 -2.39 -0.01 0.61 16
35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16
Total: -1.00 -71.36 272.39 4.27 -67.09
By element:
Atomic # 1 Polarization: 6.64 SS G_CDS: 0.99 Total: 7.63 kcal
Atomic # 6 Polarization: -33.80 SS G_CDS: 3.70 Total: -30.10 kcal
Atomic # 7 Polarization: -89.19 SS G_CDS: -2.30 Total: -91.49 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal
Total: -71.36 4.27 -67.09 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261203436.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.946 kcal
(2) G-P(sol) polarization free energy of solvation -71.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.859 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds