Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39485 * 125.87290 * 2 1 4 4 C 1.27514 * 114.30965 * 174.68510 * 3 2 1 5 5 C 1.50521 * 108.67098 * 359.55776 * 4 3 2 6 6 H 1.08993 * 104.66726 * 254.69882 * 5 4 3 7 7 C 1.49456 * 114.02935 * 139.12901 * 5 4 3 8 8 C 1.52521 * 113.25751 * 266.21134 * 7 5 4 9 9 C 1.53442 * 107.62659 * 305.17237 * 8 7 5 10 10 C 1.52232 * 108.06382 * 68.41798 * 9 8 7 11 11 H 1.09004 * 108.80626 * 62.25804 * 10 9 8 12 12 C 1.52998 * 108.80983 * 180.52674 * 10 9 8 13 13 C 1.50699 * 109.47219 * 297.48999 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00169 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00264 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99873 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47110 * 90.00491 * 17 15 13 19 19 H 1.48498 * 109.47036 * 210.00166 * 17 15 13 20 20 H 1.48493 * 109.47290 * 330.00322 * 17 15 13 21 21 C 1.48456 * 125.87155 * 180.30651 * 2 1 3 22 22 H 1.09000 * 109.92725 * 305.76730 * 21 2 1 23 23 H 1.08997 * 109.47141 * 214.77264 * 1 2 3 24 24 H 1.09001 * 109.46715 * 94.77674 * 1 2 3 25 25 H 1.09003 * 109.46885 * 334.77567 * 1 2 3 26 26 H 1.08001 * 125.65230 * 179.31271 * 4 3 2 27 27 H 1.08997 * 108.72502 * 145.23778 * 7 5 4 28 28 H 1.08996 * 108.63034 * 27.12129 * 7 5 4 29 29 H 1.09001 * 109.82982 * 185.64077 * 8 7 5 30 30 H 1.09000 * 109.88026 * 64.73409 * 8 7 5 31 31 H 1.08999 * 109.74211 * 308.77747 * 9 8 7 32 32 H 1.09001 * 109.78723 * 188.08012 * 9 8 7 33 33 H 1.09003 * 109.47000 * 57.48843 * 12 10 9 34 34 H 1.08997 * 109.47166 * 177.48837 * 12 10 9 35 35 H 0.97001 * 119.99906 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2824 1.1303 0.0000 4 6 3.5276 0.8776 0.1076 5 6 3.7095 -0.6128 0.2137 6 1 3.9435 -0.7883 1.2636 7 6 4.8705 -1.1412 -0.5652 8 6 4.4905 -1.6200 -1.9625 9 6 3.3637 -2.6504 -1.8102 10 6 2.1193 -1.9206 -1.3241 11 1 1.8233 -1.1905 -2.0775 12 6 0.9872 -2.9355 -1.1536 13 6 0.6634 -3.5558 -2.4882 14 1 1.2101 -3.2558 -3.3700 15 6 -0.3315 -4.5055 -2.5838 16 7 -0.6138 -5.0473 -3.7485 17 14 -1.2775 -5.0239 -1.0588 18 1 -2.4686 -4.1522 -0.8950 19 1 -1.7138 -6.4360 -1.2031 20 1 -0.4024 -4.8956 0.1340 21 6 2.3349 -1.2030 -0.0064 22 1 2.0673 -1.8594 0.8215 23 1 -0.3633 -0.8441 0.5861 24 1 -0.3633 -0.0856 -1.0241 25 1 -0.3633 0.9297 0.4380 26 1 4.3203 1.6111 0.1168 27 1 5.3093 -1.9748 -0.0169 28 1 5.6166 -0.3519 -0.6566 29 1 5.3529 -2.0834 -2.4418 30 1 4.1431 -0.7780 -2.5612 31 1 3.6538 -3.4084 -1.0826 32 1 3.1620 -3.1215 -2.7722 33 1 1.2990 -3.7140 -0.4572 34 1 0.1032 -2.4315 -0.7631 35 1 -1.3140 -5.7152 -3.8158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261203436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = 24.859241 kcal Electronic energy + Delta-G solvation = -15889.824635 eV Core-core repulsion = 13501.675025 eV Total energy + Delta-G solvation = -2388.149610 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.53970 -37.40248 -35.52059 -34.21883 -32.15670 -30.89366 -29.29740 -26.59770 -24.82569 -23.23090 -22.06074 -21.15281 -19.94972 -18.88879 -17.11672 -16.51148 -16.32208 -15.93593 -15.30353 -14.97444 -14.79902 -14.47274 -14.01946 -13.83115 -13.55157 -13.45869 -12.99409 -12.80114 -12.62065 -12.28788 -12.15269 -11.99748 -11.76295 -11.62966 -11.32917 -11.04029 -10.83245 -10.75381 -10.59257 -8.51628 -8.29264 -6.31593 1.31538 1.33236 1.44754 1.58843 2.01109 2.33727 3.05615 3.50944 3.69434 3.85158 4.05781 4.18068 4.31468 4.39288 4.46605 4.53679 4.63971 4.69818 4.79236 4.84728 4.93333 5.04855 5.08323 5.13824 5.22359 5.32399 5.40525 5.48293 5.56967 5.61872 5.71329 5.81864 6.30416 6.44671 6.74715 7.31356 7.32557 8.87594 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032156 B = 0.009596 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.546981 B = 2917.071235 C = 3441.649861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.147 3.853 2 N -0.571 5.571 3 N -0.273 5.273 4 C 0.032 3.968 5 C -0.094 4.094 6 H 0.092 0.908 7 C -0.088 4.088 8 C -0.114 4.114 9 C -0.101 4.101 10 C -0.068 4.068 11 H 0.030 0.970 12 C -0.005 4.005 13 C -0.516 4.516 14 H 0.030 0.970 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.945 3.055 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.247 1.247 21 C 0.137 3.863 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.024 0.976 25 H 0.081 0.919 26 H 0.228 0.772 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.491 9.333 11.303 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.390 5.390 3 N -0.075 5.075 4 C -0.184 4.184 5 C -0.115 4.115 6 H 0.110 0.890 7 C -0.126 4.126 8 C -0.152 4.152 9 C -0.140 4.140 10 C -0.088 4.088 11 H 0.049 0.951 12 C -0.042 4.042 13 C -0.554 4.554 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.594 5.594 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.171 1.171 21 C 0.033 3.967 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.245 0.755 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.395 9.893 11.169 17.632 hybrid contribution -0.692 -1.384 -0.173 1.557 sum 8.702 8.510 10.995 16.402 Atomic orbital electron populations 1.21109 0.75958 1.02396 1.00021 1.51484 1.03922 0.99324 1.84235 1.73688 1.06385 1.16421 1.11042 1.27167 0.93829 0.96229 1.01164 1.20341 0.94216 0.93989 1.03001 0.89004 1.20538 0.95662 1.02129 0.94248 1.21538 0.97889 0.97801 0.97934 1.21375 0.94425 0.97753 1.00409 1.20818 0.96248 0.96184 0.95566 0.95130 1.19675 0.94818 0.94559 0.95127 1.21396 1.17966 1.21489 0.94553 0.95133 1.25975 0.98074 0.96131 0.99113 1.70072 1.33114 1.29834 1.26394 0.85729 0.79364 0.77533 0.80470 1.19275 1.20990 1.17103 1.21446 0.90547 0.88034 0.96716 0.91407 0.91473 0.95696 0.90005 0.75547 0.90358 0.88233 0.90193 0.93665 0.91849 0.94311 0.96534 0.96868 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 4.84 10.17 127.77 1.30 6.14 16 2 N -0.57 -19.79 3.84 -517.55 -1.99 -21.78 16 3 N -0.27 -8.55 12.01 -50.88 -0.61 -9.16 16 4 C 0.03 0.73 11.61 88.68 1.03 1.76 16 5 C -0.09 -2.29 2.60 -13.32 -0.03 -2.33 16 6 H 0.09 1.92 8.02 -2.39 -0.02 1.90 16 7 C -0.09 -1.78 5.39 29.30 0.16 -1.62 16 8 C -0.11 -3.12 6.06 30.58 0.19 -2.94 16 9 C -0.10 -3.76 4.97 30.49 0.15 -3.61 16 10 C -0.07 -2.77 1.66 -11.51 -0.02 -2.79 16 11 H 0.03 1.43 7.92 -2.38 -0.02 1.41 16 12 C 0.00 -0.22 3.24 29.85 0.10 -0.12 16 13 C -0.52 -30.22 8.92 25.60 0.23 -29.99 16 14 H 0.03 1.99 7.10 -2.91 -0.02 1.97 16 15 C 0.00 0.19 5.47 84.65 0.46 0.66 16 16 N -0.95 -60.85 13.96 21.44 0.30 -60.55 16 17 Si 0.95 44.99 27.47 68.60 1.88 46.87 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 21 C 0.14 4.59 3.22 43.56 0.14 4.73 16 22 H 0.07 2.28 7.80 -2.39 -0.02 2.27 16 23 H 0.07 2.10 7.56 -2.39 -0.02 2.09 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.23 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.40 7.87 -2.39 -0.02 1.38 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.36 8.11 -2.39 -0.02 1.34 16 31 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 32 H 0.04 1.71 6.75 -2.39 -0.02 1.69 16 33 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 34 H 0.01 0.62 5.67 -2.39 -0.01 0.61 16 35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -71.36 272.39 4.27 -67.09 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.99 Total: 7.63 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.70 Total: -30.10 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -2.30 Total: -91.49 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -71.36 4.27 -67.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.946 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds